Q97X18 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97X18 - Antibiotic ABC transporter ATP binding protein

UniProt:	Q97X18	Sequences: MIVVSSIVKKYGNKIALDNISLEVKKGEFVSLIGPNGAGKTTLIRILLTLMKPDKGEVQILGENPFRNKRIFKAIGYVQEIPNYPPFLTGRQVLELSAKIRGVDKSEVKRVLEFVEMENYANSPIIKYSKGMVQRIAIAESLLGNPSILIMDEPNMGIDPIFSLKTRELLNKLKRKDNVSILMTSHELEDVKKLSDRIFMIYKGKIVFSGTVEDMIKEFLGIQVIVETDEIENAEEALKGIEYVKGVFNDGNRLIVKLNEDRREDLLRDLVTSGVKVKGFYIDLNLEEAYMRALRNV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	297 (231)
Sequences:	99480 (57700)
Seq/√Len:	3796.3

ECOLI - POTA FBPC POTG MALK YADG PROV CYSA METN YDCT UGPC YCJV MODC SAPD YEHX DPPF MACB OPPD OPPF DPPD ARAG DDPD RBSA DDPF YHES GSIA MLAF FEPC UUP LSRA MDLB TAUB MDLA SSUB FECE SAPF YECC HISP CYDC NIKE YOJI FHUC PHNC YTFR MSBA CYDD ZNUC GLNQ LPTB YPHE GLTL YHDZ PHNK LIVG THIQ LIVF ALSA XYLG SUFC BTUD MODF ARTP ETTA FTSE PSTB NIKD MGLA LOLD FETA CCMA YBBA YDDA YEJF YNJD PHNL YBHF YBIT YHIH
BACSU - YXLF YCBN YVRA OPUCA OPUBA OPUAA YFIL MSMX YVFR YDBJ YURJ YHCH YHAQ METN TAGH YKFD YTRB OPPD OPPF DPPD APPD APPF YFMM ECFA1 YKPA YUSV RBSA FHUC YHEH YFMF SUNT YDIF YFIC TCYN ECSA YLMA YFIB BMRA YCLP YFMR YGAD YKNV YWJA YHEI SKFE YKNU YXEO ECFA2 SUFC YTLC YKOD BCEA CYDD YXDL ALBC YVCR YJKB NATA GLNQ FTSE ARTM CYDC SSUB TCYC MNTB PSTB1 YTHP YVRO YYBJ EXPZ PSTB2 ZNUC YKNY YHCG YUFO YCLH YYDI YTRE
HALSA - BTUDA Q9HHQ5 Q9HMU8 Q9HMX3 Q9HRJ6 Q9HMW0 Q9HNZ9 Q9HR06 Q9HMT3 Q9HMX2 Q9HRH8 Q9HMG1 Q9HHM2 Q9HSQ7 PHNC PSTB2 Q9HMG6 Q9HNY3 Y1631 Q9HRZ9 Q9HRV7 Y2317 PSTB1 Q9HHR7 Q9HS04 Q9HR96 Q9HQA8 Q9HT03 Q9HR21 Q9HMC1 Q9HMW1
SULSO - Q97X18 Q97YK2 Q7LX64 Q97UF2 Q97YY4 Q97YQ7 Q97UY8 Q97UD4 Q97VC1 Q97YP7 Q97VK8 Q97ZC0 Q97VH6 Q97UJ9 Q97UH3 Q97VK9 Q97VF5 Q97YP3 Q97YP8 Q97VF4 Q97U54 Q97Z03 Q7LY07 Q980W0 Q97UH4 Q97V00 Y2030 Y1893 Q97V01 Q97VM2 PSTB Q97W42 Q7LX80 Q7LXM4 Q97VY4 Q97Z56 Q97Z96 Q97UC2 Q97UG5 Q97YP4 Q97ZU0 Q980K5 Q980E6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
28_E	197_R	3.498	1.00
15_I	18_D	3.073	1.00
74_A	147_S	3.045	1.00
3_V	23_E	3.029	1.00
6_S	19_N	3.004	1.00
30_V	199_F	2.891	1.00
5_S	57_E	2.876	1.00
197_R	209_S	2.795	1.00
31_S	195_S	2.737	1.00
57_E	64_N	2.725	1.00
120_Y	123_S	2.659	1.00
25_K	28_E	2.580	1.00
10_K	15_I	2.505	1.00
3_V	59_Q	2.448	1.00
211_T	214_D	2.341	1.00
18_D	205_K	2.327	1.00
210_G	214_D	2.324	1.00
8_V	55_K	2.220	1.00
8_V	15_I	2.211	1.00
9_K	46_I	2.203	1.00
5_S	59_Q	2.188	1.00
8_V	19_N	2.111	1.00
199_F	209_S	2.063	1.00
199_F	206_I	2.049	1.00
107_E	145_N	1.992	1.00
4_V	7_I	1.972	1.00
61_L	147_S	1.969	1.00
110_R	114_F	1.905	1.00
26_K	147_S	1.865	1.00
91_R	95_E	1.860	1.00
145_N	179_V	1.756	1.00
90_G	128_Y	1.732	1.00
109_K	121_A	1.723	1.00
91_R	105_K	1.718	1.00
105_K	109_K	1.705	1.00
44_I	150_I	1.688	1.00
44_I	184_T	1.666	1.00
171_N	193_K	1.665	1.00
91_R	121_A	1.662	1.00
192_K	213_E	1.658	1.00
95_E	108_V	1.651	1.00
107_E	110_R	1.576	1.00
185_S	191_V	1.571	1.00
11_Y	42_T	1.545	1.00
113_E	118_E	1.545	1.00
11_Y	16_A	1.516	1.00
91_R	122_N	1.511	1.00
22_L	199_F	1.509	1.00
64_N	67_R	1.508	1.00
123_S	127_K	1.490	1.00
6_S	21_S	1.480	1.00
9_K	51_M	1.463	1.00
9_K	54_D	1.436	1.00
210_G	215_M	1.427	1.00
28_E	196_D	1.408	1.00
94_L	112_L	1.405	1.00
4_V	22_L	1.387	1.00
24_V	30_V	1.374	1.00
114_F	172_K	1.372	1.00
8_V	18_D	1.345	1.00
10_K	54_D	1.344	1.00
219_F	223_Q	1.336	1.00
30_V	209_S	1.329	1.00
91_R	108_V	1.325	1.00
111_V	143_L	1.316	1.00
95_E	105_K	1.316	1.00
61_L	74_A	1.313	1.00
7_I	53_P	1.274	1.00
49_T	52_K	1.267	1.00
202_Y	207_V	1.257	1.00
25_K	197_R	1.256	1.00
112_L	121_A	1.256	1.00
109_K	113_E	1.253	1.00
91_R	109_K	1.236	1.00
59_Q	64_N	1.231	1.00
31_S	191_V	1.228	1.00
214_D	218_E	1.227	1.00
20_I	43_L	1.227	1.00
29_F	174_K	1.218	1.00
111_V	115_V	1.206	1.00
22_L	43_L	1.200	1.00
89_T	92_Q	1.199	1.00
221_G	224_V	1.199	1.00
30_V	197_R	1.187	1.00
208_F	218_E	1.186	1.00
87_F	92_Q	1.171	1.00
4_V	47_L	1.163	1.00
63_E	68_N	1.158	1.00
106_S	110_R	1.152	1.00
17_L	46_I	1.142	1.00
5_S	23_E	1.141	1.00
48_L	77_Y	1.141	1.00
212_V	222_I	1.140	1.00
151_M	181_I	1.118	1.00
167_R	190_D	1.104	1.00
46_I	53_P	1.096	1.00
223_Q	227_E	1.094	1.00
10_K	13_N	1.091	1.00
93_V	140_E	1.087	1.00
32_L	43_L	1.086	1.00
164_L	168_E	1.082	1.00
174_K	181_I	1.075	1.00
29_F	195_S	1.068	1.00
111_V	139_A	1.052	1.00
76_G	146_P	1.051	1.00
158_I	166_T	1.050	1.00
80_E	130_K	1.046	1.00
120_Y	128_Y	1.044	1.00
207_V	221_G	1.039	1.00
43_L	201_I	1.033	1.00
213_E	217_K	1.020	1.00
149_L	179_V	1.020	1.00
112_L	117_M	1.011	1.00
116_E	165_K	1.009	1.00
92_Q	95_E	1.006	1.00
163_S	187_E	1.004	1.00
222_I	225_I	1.002	1.00
110_R	113_E	1.000	1.00
29_F	181_I	0.998	1.00
26_K	61_L	0.996	1.00
88_L	92_Q	0.991	1.00
5_S	21_S	0.990	1.00
94_L	143_L	0.990	1.00
29_F	183_M	0.986	1.00
107_E	111_V	0.983	1.00
45_R	51_M	0.983	1.00
163_S	190_D	0.965	1.00
98_A	107_E	0.962	1.00
47_L	182_L	0.959	1.00
98_A	102_G	0.959	1.00
171_N	174_K	0.956	1.00
32_L	182_L	0.955	1.00
4_V	43_L	0.948	1.00
115_V	139_A	0.943	1.00
169_L	172_K	0.942	1.00
101_R	144_G	0.937	1.00
6_S	55_K	0.936	1.00
208_F	220_L	0.933	1.00
208_F	219_F	0.931	1.00
35_P	202_Y	0.929	1.00
70_R	73_K	0.925	1.00
9_K	42_T	0.922	1.00
198_I	212_V	0.920	1.00
214_D	217_K	0.916	1.00
128_Y	136_I	0.914	1.00
78_V	151_M	0.914	1.00
89_T	122_N	0.903	1.00
125_I	136_I	0.903	1.00
76_G	141_S	0.897	1.00
149_L	181_I	0.885	1.00
105_K	108_V	0.884	1.00
63_E	74_A	0.883	1.00
98_A	143_L	0.880	1.00
4_V	58_V	0.871	1.00
52_K	66_F	0.862	1.00
106_S	109_K	0.855	1.00
32_L	199_F	0.855	1.00
94_L	108_V	0.854	1.00
174_K	196_D	0.852	1.00
153_E	186_H	0.849	1.00
48_L	150_I	0.838	1.00
90_G	136_I	0.837	1.00
167_R	193_K	0.836	1.00
118_E	121_A	0.835	1.00
151_M	170_L	0.833	1.00
98_A	103_V	0.833	1.00
10_K	16_A	0.824	1.00
95_E	99_K	0.824	1.00
104_D	107_E	0.823	1.00
120_Y	132_M	0.821	1.00
78_V	141_S	0.819	1.00
89_T	124_P	0.818	1.00
78_V	138_I	0.811	1.00
46_I	58_V	0.806	1.00
38_A	201_I	0.805	1.00
84_Y	133_V	0.801	1.00
170_L	181_I	0.795	1.00
26_K	178_N	0.794	1.00
19_N	205_K	0.787	1.00
124_P	127_K	0.787	1.00
10_K	18_D	0.783	1.00
7_I	46_I	0.783	1.00
168_E	171_N	0.777	1.00
222_I	226_V	0.774	1.00
212_V	216_I	0.772	1.00
30_V	182_L	0.769	1.00
57_E	66_F	0.768	1.00
53_P	66_F	0.768	1.00
147_S	179_V	0.761	1.00
17_L	20_I	0.761	1.00
150_I	182_L	0.759	1.00
29_F	171_N	0.759	1.00
206_I	209_S	0.759	1.00
2_I	148_I	0.758	1.00
20_I	206_I	0.755	1.00
51_M	54_D	0.747	1.00
192_K	212_V	0.747	1.00
183_M	195_S	0.740	1.00
165_K	168_E	0.740	1.00
88_L	93_V	0.737	1.00
46_I	51_M	0.737	1.00
221_G	225_I	0.737	1.00
87_F	126_I	0.734	1.00
24_V	182_L	0.733	1.00
111_V	142_L	0.733	1.00
19_N	55_K	0.731	1.00
24_V	180_S	0.728	1.00
168_E	172_K	0.727	1.00
97_S	140_E	0.725	1.00
110_R	145_N	0.722	1.00
155_N	166_T	0.722	1.00
25_K	180_S	0.721	1.00
89_T	93_V	0.720	1.00
111_V	114_F	0.718	1.00
29_F	194_L	0.714	1.00
63_E	70_R	0.713	1.00
130_K	135_R	0.709	1.00
128_Y	132_M	0.708	1.00
64_N	68_N	0.707	1.00
202_Y	226_V	0.706	1.00
208_F	215_M	0.705	1.00
225_I	229_D	0.703	1.00
83_N	133_V	0.702	1.00
70_R	74_A	0.702	1.00
109_K	112_L	0.701	1.00
93_V	125_I	0.700	1.00
45_R	50_L	0.692	1.00
192_K	216_I	0.690	1.00
109_K	118_E	0.688	1.00
173_L	179_V	0.687	1.00
28_E	209_S	0.685	1.00
116_E	172_K	0.684	1.00
108_V	111_V	0.682	1.00
202_Y	221_G	0.681	1.00
17_L	43_L	0.678	1.00
71_I	75_I	0.678	1.00
33_I	200_M	0.674	1.00
33_I	191_V	0.672	1.00
82_P	137_A	0.669	1.00
226_V	230_E	0.668	1.00
200_M	215_M	0.665	1.00
2_I	47_L	0.663	1.00
47_L	58_V	0.663	1.00
175_R	178_N	0.661	1.00
171_N	194_L	0.660	1.00
6_S	9_K	0.659	1.00
219_F	222_I	0.659	1.00
36_N	162_F	0.659	1.00
122_N	125_I	0.657	1.00
168_E	193_K	0.651	1.00
148_I	180_S	0.649	1.00
15_I	19_N	0.646	1.00
33_I	188_L	0.645	1.00
113_E	119_N	0.644	1.00
59_Q	62_G	0.637	1.00
76_G	144_G	0.636	1.00
88_L	96_L	0.631	1.00
188_L	216_I	0.631	1.00
224_V	228_T	0.631	1.00
171_N	175_R	0.630	1.00
75_I	148_I	0.630	1.00
23_E	209_S	0.628	1.00
105_K	121_A	0.627	1.00
61_L	148_I	0.624	1.00
46_I	54_D	0.619	1.00
195_S	198_I	0.614	1.00
219_F	224_V	0.610	1.00
36_N	153_E	0.608	1.00
202_Y	205_K	0.600	1.00
103_V	107_E	0.600	1.00
208_F	223_Q	0.598	1.00
9_K	17_L	0.596	1.00
91_R	118_E	0.592	1.00
15_I	55_K	0.590	1.00
2_I	60_I	0.589	1.00
185_S	190_D	0.586	1.00
24_V	148_I	0.585	1.00
191_V	195_S	0.583	1.00
10_K	55_K	0.581	1.00
109_K	117_M	0.578	1.00
226_V	229_D	0.578	1.00
190_D	194_L	0.576	1.00
11_Y	51_M	0.575	1.00
200_M	219_F	0.574	1.00
85_P	93_V	0.573	1.00
108_V	112_L	0.568	1.00
230_E	233_N	0.567	1.00
129_S	132_M	0.567	1.00
16_A	42_T	0.566	1.00
48_L	75_I	0.564	1.00
12_G	15_I	0.562	1.00
174_K	179_V	0.562	1.00
215_M	224_V	0.561	1.00
57_E	67_R	0.561	1.00
79_Q	82_P	0.559	1.00
224_V	227_E	0.559	1.00
106_S	113_E	0.558	1.00
109_K	119_N	0.557	1.00
41_T	45_R	0.556	1.00
155_N	190_D	0.555	1.00
60_I	148_I	0.554	1.00
81_I	133_V	0.554	1.00
69_K	72_F	0.553	1.00
162_F	165_K	0.553	1.00
97_S	144_G	0.553	1.00
10_K	14_K	0.552	1.00
3_V	62_G	0.549	1.00
148_I	182_L	0.548	1.00
60_I	74_A	0.547	1.00
82_P	133_V	0.547	1.00
191_V	198_I	0.544	1.00
60_I	71_I	0.540	1.00
218_E	221_G	0.536	1.00
86_P	133_V	0.536	1.00
27_G	180_S	0.534	1.00
18_D	203_K	0.534	1.00
86_P	126_I	0.533	1.00
189_E	193_K	0.532	1.00
63_E	67_R	0.530	1.00
68_N	71_I	0.530	1.00
14_K	203_K	0.527	1.00
219_F	227_E	0.527	1.00
142_L	179_V	0.526	1.00
26_K	180_S	0.525	1.00
220_L	225_I	0.523	1.00
197_R	211_T	0.520	1.00
29_F	196_D	0.520	1.00
96_L	100_I	0.519	1.00
112_L	115_V	0.517	1.00
9_K	16_A	0.516	1.00
32_L	201_I	0.515	1.00
117_M	120_Y	0.515	1.00
47_L	150_I	0.515	1.00
195_S	212_V	0.512	1.00
135_R	162_F	0.511	1.00
97_S	100_I	0.509	1.00
134_Q	157_G	0.508	1.00
49_T	66_F	0.507	1.00
183_M	194_L	0.507	1.00
138_I	166_T	0.506	1.00
115_V	169_L	0.505	1.00
4_V	46_I	0.505	1.00
65_P	71_I	0.505	1.00
3_V	21_S	0.504	1.00
230_E	234_A	0.503	1.00
38_A	203_K	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4yerA	2	0.9057	100	0.133	Contact Map
3tuiC	2	1	100	0.176	Contact Map
3d31A	2	0.9966	100	0.189	Contact Map
1z47A	2	0.9865	100	0.193	Contact Map
1v43A	2	0.9596	100	0.194	Contact Map
2yyzA	1	0.9966	100	0.195	Contact Map
2it1A	1	0.9966	100	0.196	Contact Map
4rvcA	4	0.7879	100	0.199	Contact Map
4u00A	1	0.7811	100	0.2	Contact Map
3rlfA	2	1	100	0.201	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0102 seconds.