ILVC3 - SULSO - GREMLIN Contacts

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ILVC3 - Putative ketol-acid reductoisomerase 3

UniProt:	Q97X13	Sequences: MDKTVLDASLEPLKGKTIAVIGYGNQGRVQANIMRENGLNVIIGNVKDRYYDLAIKEGFEVYDIGEAVKKADVAFLLIPDEIMKEIYEKKIAPILEGKKEFVLDFASGYNVAFGLIRPPKNVDTVMVAPRMVGEGIMDLHKQGKGYPVLLGVKQDASGKAWDYAKAIAKGIGAIPGGIAVISSFEEEALLDLMSEHTWVPILFGAIKACFDVAVKEYGVSPEAALLEFYASGELVEIARLIAEEGIFNQMVHHSTTSQYGTLTRMFKYYDLVKEIVKDEAKYIWDGSFAKEWTLEQQAGYPVFYRLWELAVQSEMAKAEKELYKILRRKVSD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	332 (316)
Sequences:	1918 (659)
Seq/√Len:	37.1

ECOLI - ILVC
BACSU - ILVC
SULSO - ILVC3 ILVC2 ILVC1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
18_I	39_L	4.571	1.00
96_E	101_F	4.029	1.00
148_V	173_A	3.797	1.00
206_I	241_I	3.154	1.00
17_T	40_N	2.973	1.00
97_G	121_N	2.899	1.00
250_M	261_T	2.850	1.00
102_V	125_V	2.791	1.00
150_L	161_W	2.787	1.00
78_I	86_I	2.757	1.00
30_Q	106_A	2.709	1.00
174_I	178_I	2.607	1.00
206_I	234_L	2.568	1.00
202_L	234_L	2.542	1.00
308_E	312_Q	2.528	1.00
119_P	122_V	2.494	1.00
258_Q	307_W	2.476	1.00
139_L	142_Q	2.409	1.00
186_E	220_S	2.393	1.00
88_E	92_A	2.353	1.00
52_D	55_I	2.328	1.00
85_E	89_K	2.297	0.99
81_E	255_T	2.276	0.99
275_I	278_D	2.268	0.99
269_Y	272_V	2.259	0.99
138_D	243_E	2.183	0.99
244_E	248_N	2.129	0.99
264_R	279_E	2.106	0.99
8_A	174_I	2.100	0.99
35_R	59_F	2.049	0.99
104_D	125_V	1.994	0.99
267_K	282_Y	1.979	0.98
272_V	275_I	1.943	0.98
102_V	163_Y	1.933	0.98
85_E	297_Q	1.931	0.98
76_L	91_I	1.923	0.98
34_M	170_G	1.896	0.98
13_L	166_A	1.892	0.98
169_K	174_I	1.880	0.98
51_Y	55_I	1.867	0.98
207_K	310_A	1.866	0.98
47_K	63_D	1.858	0.98
102_V	123_D	1.855	0.98
45_N	48_D	1.833	0.97
264_R	291_E	1.783	0.97
64_I	90_K	1.764	0.97
264_R	282_Y	1.762	0.97
43_I	59_F	1.759	0.97
155_D	162_D	1.744	0.97
298_A	301_P	1.722	0.96
23_Y	57_E	1.714	0.96
269_Y	275_I	1.709	0.96
65_G	90_K	1.703	0.96
11_E	14_K	1.674	0.96
123_D	160_A	1.658	0.95
161_W	181_I	1.649	0.95
220_S	223_A	1.646	0.95
19_A	67_A	1.634	0.95
75_F	106_A	1.625	0.95
271_L	274_E	1.621	0.95
5_V	174_I	1.610	0.95
74_A	101_F	1.583	0.94
206_I	229_Y	1.578	0.94
131_M	173_A	1.573	0.94
296_Q	300_Y	1.572	0.94
62_Y	70_K	1.569	0.94
21_I	76_L	1.569	0.94
135_G	138_D	1.556	0.93
109_Y	289_A	1.552	0.93
30_Q	75_F	1.489	0.92
121_N	156_A	1.488	0.92
51_Y	63_D	1.473	0.91
21_I	44_G	1.471	0.91
42_I	70_K	1.469	0.91
55_I	60_E	1.468	0.91
203_F	261_T	1.461	0.91
123_D	159_K	1.457	0.91
60_E	70_K	1.451	0.91
139_L	144_K	1.450	0.91
75_F	104_D	1.439	0.90
291_E	302_V	1.437	0.90
202_L	206_I	1.433	0.90
42_I	62_Y	1.423	0.90
294_L	297_Q	1.409	0.89
317_K	321_E	1.395	0.89
203_F	246_I	1.375	0.88
281_K	285_D	1.367	0.88
17_T	42_I	1.367	0.88
204_G	273_K	1.366	0.88
47_K	51_Y	1.360	0.88
263_T	291_E	1.360	0.88
255_T	300_Y	1.352	0.87
267_K	275_I	1.348	0.87
68_V	101_F	1.341	0.87
294_L	298_A	1.336	0.87
17_T	70_K	1.331	0.87
292_W	295_E	1.326	0.86
68_V	94_I	1.321	0.86
278_D	282_Y	1.315	0.86
262_L	307_W	1.311	0.86
264_R	268_Y	1.307	0.86
134_E	252_H	1.305	0.85
258_Q	262_L	1.303	0.85
211_D	273_K	1.297	0.85
229_Y	241_I	1.292	0.85
263_T	282_Y	1.289	0.85
69_K	94_I	1.279	0.84
216_E	277_K	1.277	0.84
206_I	315_M	1.276	0.84
203_F	250_M	1.268	0.84
52_D	56_K	1.264	0.84
216_E	273_K	1.262	0.83
292_W	300_Y	1.256	0.83
305_R	309_L	1.246	0.83
83_M	110_N	1.242	0.82
303_F	307_W	1.233	0.82
204_G	207_K	1.226	0.82
112_A	185_E	1.222	0.81
48_D	59_F	1.213	0.81
136_I	146_Y	1.211	0.81
18_I	170_G	1.209	0.81
290_K	294_L	1.206	0.80
68_V	74_A	1.204	0.80
123_D	156_A	1.197	0.80
32_N	59_F	1.192	0.80
204_G	208_A	1.188	0.79
8_A	178_I	1.184	0.79
293_T	298_A	1.182	0.79
125_V	160_A	1.174	0.79
101_F	122_V	1.174	0.79
46_V	49_R	1.165	0.78
37_N	140_H	1.160	0.78
40_N	60_E	1.153	0.77
115_L	293_T	1.152	0.77
262_L	306_L	1.149	0.77
287_S	291_E	1.147	0.77
210_F	314_E	1.138	0.76
102_V	157_S	1.137	0.76
292_W	296_Q	1.136	0.76
63_D	66_E	1.133	0.76
21_I	78_I	1.104	0.74
229_Y	315_M	1.104	0.74
211_D	313_S	1.103	0.74
256_T	288_F	1.097	0.74
123_D	157_S	1.095	0.74
28_R	252_H	1.086	0.73
197_T	209_C	1.078	0.72
208_A	212_V	1.073	0.72
243_E	248_N	1.053	0.71
9_S	12_P	1.048	0.70
159_K	162_D	1.040	0.70
253_H	261_T	1.040	0.70
110_N	116_I	1.040	0.70
95_L	122_V	1.037	0.69
84_K	88_E	1.034	0.69
282_Y	287_S	1.031	0.69
64_I	68_V	1.028	0.69
8_A	169_K	1.026	0.69
10_L	169_K	1.023	0.68
275_I	282_Y	1.023	0.68
268_Y	279_E	1.015	0.68
45_N	50_Y	1.013	0.68
186_E	223_A	1.009	0.67
109_Y	115_L	1.008	0.67
121_N	154_Q	1.007	0.67
48_D	51_Y	1.006	0.67
308_E	311_V	0.999	0.67
268_Y	272_V	0.995	0.66
306_L	310_A	0.994	0.66
294_L	305_R	0.993	0.66
101_F	119_P	0.992	0.66
202_L	241_I	0.991	0.66
94_I	101_F	0.990	0.66
131_M	146_Y	0.964	0.64
65_G	94_I	0.964	0.64
198_W	209_C	0.961	0.63
156_A	160_A	0.961	0.63
59_F	62_Y	0.953	0.63
270_D	274_E	0.948	0.62
12_P	166_A	0.946	0.62
300_Y	304_Y	0.944	0.62
28_R	134_E	0.938	0.62
324_K	327_R	0.937	0.61
305_R	308_E	0.935	0.61
104_D	167_I	0.929	0.61
74_A	119_P	0.921	0.60
270_D	273_K	0.917	0.60
40_N	70_K	0.917	0.60
50_Y	61_V	0.911	0.59
5_V	169_K	0.907	0.59
20_V	167_I	0.905	0.59
263_T	306_L	0.903	0.59
274_E	277_K	0.903	0.59
102_V	160_A	0.901	0.58
197_T	268_Y	0.899	0.58
247_F	311_V	0.899	0.58
144_K	328_R	0.898	0.58
53_L	57_E	0.896	0.58
204_G	266_F	0.892	0.58
292_W	303_F	0.886	0.57
35_R	48_D	0.881	0.57
248_N	251_V	0.881	0.57
118_P	121_N	0.879	0.57
32_N	57_E	0.877	0.56
131_M	148_V	0.867	0.55
63_D	68_V	0.865	0.55
300_Y	303_F	0.865	0.55
20_V	31_A	0.854	0.54
161_W	165_K	0.852	0.54
46_V	51_Y	0.845	0.54
42_I	74_A	0.845	0.54
127_V	168_A	0.843	0.53
95_L	119_P	0.839	0.53
279_E	282_Y	0.836	0.53
72_D	101_F	0.834	0.53
21_I	68_V	0.831	0.52
250_M	310_A	0.830	0.52
87_Y	103_L	0.822	0.52
114_G	117_R	0.821	0.51
20_V	34_M	0.821	0.51
9_S	162_D	0.820	0.51
255_T	292_W	0.816	0.51
302_V	306_L	0.814	0.51
135_G	242_A	0.813	0.51
21_I	64_I	0.813	0.51
322_L	326_L	0.804	0.50
84_K	297_Q	0.804	0.50
212_V	273_K	0.803	0.50
268_Y	275_I	0.802	0.50
294_L	309_L	0.796	0.49
111_V	126_M	0.795	0.49
83_M	116_I	0.790	0.49
302_V	305_R	0.790	0.49
45_N	61_V	0.783	0.48
39_L	170_G	0.783	0.48
19_A	42_I	0.783	0.48
109_Y	188_A	0.781	0.48
101_F	121_N	0.781	0.48
73_V	125_V	0.779	0.48
97_G	101_F	0.775	0.47
204_G	250_M	0.773	0.47
44_G	50_Y	0.768	0.47
271_L	275_I	0.768	0.47
247_F	316_A	0.765	0.47
62_Y	66_E	0.764	0.46
282_Y	291_E	0.759	0.46
264_R	275_I	0.756	0.46
206_I	238_A	0.752	0.45
139_L	242_A	0.750	0.45
72_D	96_E	0.747	0.45
311_V	314_E	0.747	0.45
53_L	56_K	0.747	0.45
294_L	302_V	0.744	0.45
83_M	105_F	0.743	0.45
115_L	294_L	0.741	0.44
138_D	141_K	0.740	0.44
229_Y	246_I	0.735	0.44
97_G	156_A	0.734	0.44
139_L	327_R	0.732	0.44
148_V	171_I	0.731	0.44
82_I	86_I	0.729	0.43
131_M	138_D	0.726	0.43
169_K	178_I	0.724	0.43
12_P	163_Y	0.724	0.43
241_I	246_I	0.723	0.43
76_L	86_I	0.721	0.43
246_I	310_A	0.716	0.42
54_A	61_V	0.711	0.42
126_M	148_V	0.710	0.42
115_L	296_Q	0.710	0.42
217_Y	280_A	0.707	0.41
125_V	150_L	0.704	0.41
32_N	50_Y	0.703	0.41
50_Y	53_L	0.703	0.41
294_L	308_E	0.702	0.41
25_N	134_E	0.700	0.41
144_K	242_A	0.698	0.41
34_M	167_I	0.697	0.41
134_E	251_V	0.697	0.41
259_Y	291_E	0.696	0.41
163_Y	166_A	0.695	0.40
259_Y	328_R	0.695	0.40
48_D	57_E	0.694	0.40
282_Y	285_D	0.694	0.40
15_G	166_A	0.692	0.40
35_R	57_E	0.690	0.40
317_K	320_K	0.690	0.40
278_D	281_K	0.690	0.40
150_L	164_A	0.689	0.40
73_V	166_A	0.689	0.40
109_Y	293_T	0.681	0.39
13_L	170_G	0.679	0.39
201_I	205_A	0.678	0.39
28_R	57_E	0.675	0.39
51_Y	61_V	0.674	0.39
287_S	290_K	0.674	0.39
113_F	188_A	0.673	0.39
278_D	287_S	0.673	0.39
10_L	39_L	0.673	0.39
161_W	164_A	0.670	0.38
144_K	327_R	0.668	0.38
112_A	153_K	0.661	0.38
204_G	261_T	0.658	0.37
84_K	293_T	0.657	0.37
41_V	44_G	0.655	0.37
124_T	154_Q	0.654	0.37
69_K	96_E	0.651	0.37
303_F	306_L	0.651	0.37
45_N	51_Y	0.648	0.37
321_E	324_K	0.648	0.37
149_L	181_I	0.648	0.37
78_I	82_I	0.644	0.36
21_I	91_I	0.642	0.36
46_V	64_I	0.641	0.36
131_M	135_G	0.641	0.36
279_E	291_E	0.641	0.36
262_L	291_E	0.640	0.36
74_A	122_V	0.639	0.36
197_T	279_E	0.638	0.36
104_D	163_Y	0.635	0.35
114_G	153_K	0.635	0.35
197_T	234_L	0.634	0.35
81_E	258_Q	0.633	0.35
54_A	59_F	0.631	0.35
155_D	158_G	0.630	0.35
114_G	299_G	0.628	0.35
75_F	167_I	0.624	0.35
117_R	304_Y	0.624	0.35
46_V	82_I	0.624	0.35
247_F	320_K	0.622	0.34
97_G	122_V	0.620	0.34
16_K	163_Y	0.619	0.34
138_D	248_N	0.618	0.34
291_E	294_L	0.618	0.34
139_L	173_A	0.617	0.34
49_R	52_D	0.616	0.34
309_L	312_Q	0.616	0.34
81_E	253_H	0.615	0.34
173_A	328_R	0.614	0.34
115_L	297_Q	0.613	0.34
312_Q	317_K	0.613	0.34
66_E	70_K	0.613	0.34
30_Q	104_D	0.611	0.34
307_W	311_V	0.608	0.33
35_R	47_K	0.607	0.33
204_G	283_I	0.606	0.33
135_G	139_L	0.606	0.33
5_V	10_L	0.605	0.33
188_A	289_A	0.605	0.33
19_A	44_G	0.605	0.33
193_M	280_A	0.604	0.33
264_R	278_D	0.603	0.33
263_T	275_I	0.602	0.33
28_R	32_N	0.602	0.33
125_V	164_A	0.602	0.33
189_L	284_W	0.601	0.33
131_M	175_P	0.601	0.33
138_D	142_Q	0.601	0.33
92_A	119_P	0.600	0.33
96_E	122_V	0.599	0.33
70_K	166_A	0.599	0.33
291_E	306_L	0.598	0.33
66_E	69_K	0.597	0.32
207_K	246_I	0.596	0.32
246_I	315_M	0.592	0.32
64_I	78_I	0.592	0.32
150_L	223_A	0.592	0.32
263_T	279_E	0.591	0.32
307_W	310_A	0.591	0.32
148_V	178_I	0.591	0.32
290_K	302_V	0.590	0.32
125_V	163_Y	0.590	0.32
135_G	326_L	0.588	0.32
44_G	48_D	0.587	0.32
97_G	119_P	0.587	0.32
185_E	223_A	0.587	0.32
287_S	302_V	0.586	0.32
13_L	70_K	0.586	0.32
168_A	178_I	0.586	0.32
319_E	323_Y	0.585	0.32
194_S	199_V	0.581	0.31
294_L	301_P	0.580	0.31
250_M	253_H	0.579	0.31
68_V	76_L	0.575	0.31
234_L	241_I	0.575	0.31
6_L	169_K	0.573	0.31
19_A	74_A	0.573	0.31
270_D	277_K	0.573	0.31
235_V	239_R	0.572	0.31
102_V	159_K	0.570	0.30
217_Y	284_W	0.570	0.30
301_P	304_Y	0.568	0.30
50_Y	54_A	0.567	0.30
63_D	90_K	0.567	0.30
35_R	62_Y	0.567	0.30
259_Y	264_R	0.562	0.30
28_R	251_V	0.562	0.30
255_T	307_W	0.562	0.30
19_A	71_A	0.561	0.30
123_D	163_Y	0.560	0.30
127_V	144_K	0.559	0.30
189_L	219_V	0.557	0.29
43_I	62_Y	0.557	0.29
267_K	278_D	0.555	0.29
32_N	36_E	0.554	0.29
229_Y	234_L	0.552	0.29
306_L	309_L	0.552	0.29
163_Y	290_K	0.552	0.29
116_I	256_T	0.551	0.29
31_A	293_T	0.545	0.29
139_L	328_R	0.545	0.29
204_G	211_D	0.545	0.29
44_G	74_A	0.542	0.28
320_K	324_K	0.541	0.28
297_Q	302_V	0.541	0.28
210_F	216_E	0.540	0.28
32_N	35_R	0.537	0.28
106_A	234_L	0.537	0.28
264_R	306_L	0.536	0.28
8_A	12_P	0.536	0.28
70_K	101_F	0.535	0.28
141_K	144_K	0.535	0.28
263_T	278_D	0.534	0.28
113_F	285_D	0.534	0.28
16_K	72_D	0.529	0.27
20_V	106_A	0.528	0.27
144_K	176_G	0.527	0.27
68_V	91_I	0.526	0.27
78_I	81_E	0.526	0.27
115_L	299_G	0.526	0.27
255_T	303_F	0.525	0.27
5_V	36_E	0.525	0.27
210_F	220_S	0.523	0.27
273_K	277_K	0.523	0.27
135_G	328_R	0.523	0.27
148_V	174_I	0.521	0.27
261_T	310_A	0.521	0.27
255_T	258_Q	0.520	0.27
277_K	281_K	0.519	0.27
136_I	173_A	0.519	0.27
125_V	327_R	0.518	0.27
177_G	226_L	0.517	0.27
264_R	267_K	0.517	0.27
11_E	52_D	0.515	0.26
253_H	257_S	0.515	0.26
62_Y	67_A	0.514	0.26
211_D	266_F	0.514	0.26
113_F	256_T	0.513	0.26
303_F	310_A	0.512	0.26
35_R	40_N	0.510	0.26
14_K	120_K	0.510	0.26
21_I	70_K	0.507	0.26
117_R	162_D	0.507	0.26
79_P	86_I	0.507	0.26
114_G	304_Y	0.507	0.26
45_N	55_I	0.506	0.26
18_I	73_V	0.506	0.26
28_R	31_A	0.506	0.26
35_R	60_E	0.506	0.26
110_N	188_A	0.505	0.26
76_L	83_M	0.505	0.26
64_I	86_I	0.505	0.26
78_I	90_K	0.505	0.26
173_A	234_L	0.504	0.26
107_S	130_R	0.503	0.26
5_V	327_R	0.503	0.26
159_K	163_Y	0.502	0.26
69_K	268_Y	0.502	0.26
317_K	324_K	0.501	0.25
208_A	270_D	0.501	0.25
51_Y	64_I	0.500	0.25
53_L	251_V	0.500	0.25
48_D	52_D	0.500	0.25
81_E	307_W	0.500	0.25

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3ulkA	3	0.9639	100	0.497	Contact Map
4xdyA	2	0.9699	100	0.526	Contact Map
4xdzA	2	0.9759	100	0.528	Contact Map
4tskA	3	0.9789	100	0.55	Contact Map
3fr7A	2	0.9608	100	0.58	Contact Map
1np3A	4	0.9729	100	0.608	Contact Map
4kqwA	2	0.9729	100	0.621	Contact Map
4yt2A	2	0.9036	99.9	0.842	Contact Map
3ggoA	2	0.7922	99.6	0.88	Contact Map
2izzA	5	0.7952	99.4	0.897	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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