Q97WZ8 - SULSO - GREMLIN Contacts

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Q97WZ8 - Uncharacterized protein

UniProt:	Q97WZ8	Sequences: MISFILVAPHGDEIIDPKDEKSSLLNKAMREAASLVKADKYIVITPHNIRIDDHMAVILTQYAEGKRGKIKRKYLCDRGLAYEIYERAKGSGLPVVGVNFGALEGKESKIALDWGSSIPLYFLKRRRIVLLTPARGVKREILRKFGVVIGEVLRDHRKRVGVIVSADHAHTHDPKGPYGYSEYAAVYDSTIVDIFKSERFEDLMKIDDKVISEAKPDSYWQLLIMLGILESSYNKYSVKLMEYQVPSYFGMMVALLS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	257 (214)
Sequences:	3297 (2366)
Seq/√Len:	161.7

ECOLI - YGID MHPB
SULSO - Q97WZ8 Q97WR5 Q97X42

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
83_E	158_K	5.178	1.00
199_R	202_D	4.311	1.00
209_K	214_A	3.696	1.00
144_K	147_V	3.378	1.00
39_D	159_R	2.964	1.00
162_V	228_I	2.600	1.00
211_I	214_A	2.600	1.00
44_I	224_I	2.441	1.00
31_E	34_S	2.439	1.00
140_E	144_K	2.414	1.00
40_K	160_V	2.397	1.00
193_D	197_S	2.375	1.00
77_D	129_V	2.035	1.00
168_H	191_I	2.007	1.00
138_K	141_I	1.995	1.00
219_Y	223_L	1.992	1.00
80_L	84_I	1.986	1.00
209_K	213_E	1.888	1.00
91_S	151_E	1.877	1.00
44_I	149_I	1.862	1.00
5_I	225_M	1.846	1.00
23_S	27_K	1.840	1.00
22_S	27_K	1.793	1.00
12_D	16_D	1.790	1.00
143_R	147_V	1.764	1.00
40_K	80_L	1.756	1.00
41_Y	126_R	1.754	1.00
205_K	208_D	1.744	1.00
164_V	225_M	1.742	1.00
185_A	189_S	1.740	1.00
210_V	214_A	1.738	1.00
194_I	202_D	1.728	1.00
56_A	107_E	1.728	1.00
63_A	66_K	1.720	1.00
62_Y	73_K	1.710	1.00
9_P	167_D	1.709	1.00
59_L	106_K	1.686	1.00
83_E	87_R	1.684	1.00
57_V	85_Y	1.668	1.00
31_E	35_L	1.667	1.00
85_Y	106_K	1.588	1.00
42_I	131_L	1.587	1.00
83_E	86_E	1.531	1.00
27_K	30_R	1.524	1.00
70_I	121_Y	1.524	1.00
58_I	130_L	1.516	1.00
87_R	151_E	1.515	1.00
13_E	16_D	1.514	1.00
143_R	204_M	1.494	1.00
39_D	158_K	1.484	1.00
190_T	194_I	1.478	1.00
91_S	148_V	1.470	1.00
134_A	142_L	1.457	1.00
82_Y	86_E	1.451	1.00
143_R	200_F	1.389	1.00
186_V	210_V	1.362	1.00
146_G	227_G	1.347	1.00
85_Y	95_V	1.343	1.00
192_V	196_K	1.337	1.00
141_I	144_K	1.336	1.00
146_G	228_I	1.323	1.00
191_I	219_Y	1.307	1.00
66_K	111_A	1.306	1.00
112_L	116_S	1.303	1.00
41_Y	161_G	1.291	1.00
43_V	116_S	1.287	1.00
56_A	96_V	1.286	1.00
43_V	163_I	1.285	1.00
40_K	127_R	1.284	1.00
62_Y	75_L	1.268	1.00
87_R	152_V	1.257	1.00
42_I	129_V	1.255	1.00
23_S	26_N	1.254	1.00
137_V	141_I	1.235	1.00
86_E	90_G	1.231	1.00
55_M	134_A	1.220	1.00
79_G	82_Y	1.214	1.00
187_Y	219_Y	1.203	1.00
209_K	212_S	1.202	1.00
8_A	29_M	1.193	1.00
42_I	160_V	1.190	1.00
84_I	129_V	1.189	1.00
42_I	84_I	1.189	1.00
188_D	192_V	1.168	1.00
49_I	215_K	1.149	1.00
78_R	81_A	1.135	1.00
120_L	128_I	1.126	1.00
194_I	199_R	1.125	1.00
67_R	117_S	1.124	1.00
17_P	20_E	1.116	1.00
82_Y	106_K	1.115	1.00
124_K	161_G	1.102	1.00
77_D	80_L	1.101	1.00
77_D	158_K	1.079	0.99
133_P	217_D	1.077	0.99
44_I	162_V	1.070	0.99
175_K	178_Y	1.069	0.99
49_I	135_R	1.068	0.99
13_E	17_P	1.061	0.99
134_A	141_I	1.058	0.99
42_I	162_V	1.053	0.99
54_H	134_A	1.049	0.99
46_P	217_D	1.046	0.99
55_M	145_F	1.042	0.99
206_I	211_I	1.042	0.99
84_I	87_R	1.039	0.99
11_G	16_D	1.036	0.99
182_E	186_V	1.032	0.99
38_A	126_R	1.028	0.99
143_R	226_L	1.025	0.99
139_R	223_L	1.021	0.99
180_Y	185_A	1.018	0.99
210_V	213_E	1.017	0.99
24_L	27_K	1.014	0.99
174_P	177_P	1.012	0.99
26_N	30_R	1.006	0.99
27_K	31_E	1.003	0.99
57_V	131_L	1.001	0.99
116_S	130_L	0.993	0.99
85_Y	89_K	0.987	0.99
45_T	113_D	0.983	0.99
190_T	193_D	0.980	0.99
175_K	179_G	0.980	0.99
193_D	196_K	0.979	0.99
6_L	161_G	0.967	0.99
63_A	76_C	0.964	0.99
82_Y	85_Y	0.952	0.99
131_L	149_I	0.945	0.99
133_P	220_W	0.935	0.98
12_D	17_P	0.932	0.98
171_T	215_K	0.930	0.98
80_L	129_V	0.924	0.98
207_D	212_S	0.924	0.98
92_G	140_E	0.924	0.98
142_L	224_I	0.916	0.98
8_A	32_A	0.913	0.98
143_R	223_L	0.913	0.98
88_A	145_F	0.907	0.98
43_V	120_L	0.904	0.98
57_V	66_K	0.895	0.98
144_K	148_V	0.894	0.98
61_Q	78_R	0.893	0.98
200_F	204_M	0.890	0.98
147_V	230_E	0.884	0.98
150_G	230_E	0.882	0.98
44_I	131_L	0.880	0.98
12_D	15_I	0.872	0.98
6_L	32_A	0.872	0.98
59_L	108_S	0.868	0.98
189_S	193_D	0.865	0.97
41_Y	120_L	0.859	0.97
37_K	126_R	0.853	0.97
215_K	218_S	0.846	0.97
72_R	125_R	0.846	0.97
143_R	227_G	0.845	0.97
57_V	84_I	0.840	0.97
88_A	148_V	0.840	0.97
177_P	180_Y	0.839	0.97
186_V	189_S	0.834	0.97
38_A	161_G	0.830	0.97
140_E	201_E	0.828	0.97
156_H	159_R	0.823	0.97
87_R	91_S	0.820	0.97
55_M	142_L	0.818	0.96
53_D	136_G	0.804	0.96
58_I	63_A	0.803	0.96
77_D	84_I	0.792	0.96
80_L	152_V	0.788	0.96
8_A	163_I	0.787	0.96
49_I	217_D	0.787	0.96
75_L	78_R	0.783	0.96
36_V	123_L	0.781	0.95
24_L	28_A	0.775	0.95
88_A	93_L	0.774	0.95
45_T	115_G	0.774	0.95
9_P	169_A	0.774	0.95
57_V	106_K	0.766	0.95
65_G	112_L	0.765	0.95
38_A	41_Y	0.763	0.95
137_V	142_L	0.760	0.95
140_E	204_M	0.757	0.95
201_E	205_K	0.757	0.95
8_A	119_P	0.746	0.94
30_R	34_S	0.744	0.94
203_L	226_L	0.743	0.94
182_E	185_A	0.741	0.94
22_S	26_N	0.736	0.94
89_K	94_P	0.735	0.94
75_L	127_R	0.732	0.94
20_E	23_S	0.726	0.93
76_C	81_A	0.726	0.93
139_R	219_Y	0.724	0.93
84_I	152_V	0.722	0.93
174_P	179_G	0.720	0.93
54_H	96_V	0.719	0.93
200_F	226_L	0.714	0.93
17_P	21_K	0.713	0.93
36_V	161_G	0.712	0.93
68_G	72_R	0.708	0.92
57_V	65_G	0.696	0.92
169_A	188_D	0.696	0.92
29_M	122_F	0.692	0.92
112_L	128_I	0.685	0.91
64_E	110_I	0.684	0.91
47_H	170_H	0.681	0.91
68_G	71_K	0.681	0.91
147_V	151_E	0.679	0.91
49_I	133_P	0.677	0.91
11_G	14_I	0.676	0.91
65_G	71_K	0.671	0.90
48_N	132_T	0.668	0.90
60_T	63_A	0.664	0.90
116_S	120_L	0.658	0.89
33_A	123_L	0.657	0.89
191_I	222_L	0.656	0.89
8_A	123_L	0.656	0.89
216_P	220_W	0.653	0.89
133_P	224_I	0.649	0.89
174_P	178_Y	0.647	0.89
74_Y	112_L	0.640	0.88
144_K	233_Y	0.639	0.88
38_A	124_K	0.638	0.88
167_D	184_A	0.638	0.88
46_P	49_I	0.637	0.88
30_R	122_F	0.637	0.88
10_H	165_S	0.637	0.88
96_V	106_K	0.633	0.88
16_D	121_Y	0.631	0.87
54_H	63_A	0.631	0.87
194_I	197_S	0.629	0.87
230_E	233_Y	0.629	0.87
198_E	229_L	0.625	0.87
28_A	32_A	0.624	0.87
181_S	213_E	0.624	0.87
11_G	15_I	0.620	0.86
202_D	205_K	0.617	0.86
53_D	135_R	0.615	0.86
29_M	33_A	0.612	0.86
165_S	170_H	0.610	0.86
116_S	128_I	0.608	0.85
30_R	33_A	0.607	0.85
9_P	14_I	0.606	0.85
118_I	121_Y	0.605	0.85
45_T	58_I	0.598	0.84
50_R	132_T	0.597	0.84
130_L	133_P	0.594	0.84
142_L	220_W	0.587	0.83
61_Q	65_G	0.586	0.83
50_R	56_A	0.585	0.83
184_A	188_D	0.584	0.83
7_V	225_M	0.582	0.83
187_Y	190_T	0.582	0.83
217_D	220_W	0.581	0.83
139_R	206_I	0.580	0.83
198_E	230_E	0.580	0.83
25_L	188_D	0.579	0.83
115_G	118_I	0.576	0.82
45_T	221_Q	0.574	0.82
119_P	122_F	0.572	0.82
14_I	67_R	0.571	0.82
9_P	12_D	0.568	0.81
6_L	123_L	0.566	0.81
169_A	184_A	0.566	0.81
25_L	28_A	0.565	0.81
183_Y	213_E	0.565	0.81
186_V	190_T	0.564	0.81
53_D	66_K	0.564	0.81
79_G	83_E	0.562	0.81
225_M	229_L	0.561	0.81
148_V	152_V	0.560	0.80
87_R	158_K	0.560	0.80
65_G	74_Y	0.559	0.80
10_H	47_H	0.559	0.80
10_H	170_H	0.558	0.80
198_E	201_E	0.556	0.80
143_R	230_E	0.556	0.80
168_H	188_D	0.555	0.80
15_I	118_I	0.552	0.79
60_T	129_V	0.551	0.79
14_I	17_P	0.551	0.79
48_N	130_L	0.546	0.79
89_K	95_V	0.544	0.78
26_N	122_F	0.544	0.78
39_D	77_D	0.542	0.78
16_D	118_I	0.540	0.78
28_A	31_E	0.540	0.78
58_I	65_G	0.538	0.78
151_E	180_Y	0.538	0.78
32_A	36_V	0.535	0.77
12_D	22_S	0.535	0.77
16_D	122_F	0.533	0.77
48_N	110_I	0.531	0.77
217_D	221_Q	0.529	0.77
96_V	107_E	0.527	0.76
204_M	223_L	0.526	0.76
157_R	160_V	0.525	0.76
169_A	172_H	0.523	0.76
41_Y	124_K	0.522	0.76
95_V	106_K	0.521	0.75
169_A	215_K	0.518	0.75
60_T	65_G	0.518	0.75
152_V	156_H	0.517	0.75
93_L	145_F	0.517	0.75
67_R	72_R	0.516	0.75
25_L	169_A	0.516	0.75
189_S	192_V	0.515	0.75
22_S	25_L	0.514	0.75
59_L	85_Y	0.513	0.74
43_V	128_I	0.512	0.74
12_D	21_K	0.509	0.74
11_G	17_P	0.509	0.74
61_Q	66_K	0.508	0.74
12_D	172_H	0.507	0.74
55_M	66_K	0.507	0.74
59_L	107_E	0.507	0.74
134_A	137_V	0.505	0.73
37_K	159_R	0.505	0.73
150_G	231_S	0.505	0.73
53_D	96_V	0.505	0.73
124_K	159_R	0.504	0.73
41_Y	168_H	0.500	0.72

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3vsjA	1	0.9572	100	0.297	Contact Map
2pw6A	2	0.8949	100	0.314	Contact Map
3vsjB	2	0.965	100	0.328	Contact Map
1b4uB	2	0.9377	100	0.342	Contact Map
3wraA	2	0.9339	100	0.359	Contact Map
3bczA	1	0.8911	100	0.493	Contact Map
2odfA	2	0.5447	60.5	0.942	Contact Map
1t57A	5	0.6459	50	0.945	Contact Map
1vp8A	5	0.6809	48.1	0.946	Contact Map
4yhsA	1	0.9027	35	0.95	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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