Q97WZ7 - SULSO - GREMLIN Contacts

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Q97WZ7 - Uncharacterized protein

UniProt:	Q97WZ7	Sequences: MTTAFRPRYGEKPRERLTFNKKVYVVDQGIISRVALRAKDRGRVMENLVALKLLRDNQLKGLYYVKGKDFEIDFYDEVNSRLLQVTYASDKIEEREIRSLLKAEEMLRTKELIMITYDIEGEEEREGKKIKLVPLYKFLLS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	141 (130)
Sequences:	1063 (861)
Seq/√Len:	75.5

SULSO - Q97WZ7 Q97YN5 Q97Y74

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
45_M	135_L	3.942	1.00
52_K	56_D	3.728	1.00
120_E	137_K	3.212	1.00
70_F	98_R	3.094	1.00
101_L	128_K	2.686	1.00
86_T	89_S	2.484	1.00
81_R	113_I	2.390	1.00
31_I	40_D	2.353	1.00
49_V	85_V	2.347	1.00
50_A	54_L	2.283	1.00
104_E	112_L	2.207	1.00
90_D	94_E	2.132	1.00
115_I	138_F	2.112	1.00
88_A	92_I	2.111	1.00
83_L	115_I	2.048	1.00
115_I	133_V	2.001	1.00
115_I	135_L	1.994	1.00
25_V	47_N	1.947	1.00
48_L	139_L	1.913	1.00
72_I	103_A	1.879	1.00
4_A	26_V	1.866	1.00
94_E	98_R	1.836	1.00
89_S	93_E	1.834	1.00
51_L	55_R	1.754	1.00
89_S	92_I	1.710	1.00
97_I	114_M	1.668	1.00
89_S	132_L	1.666	1.00
28_Q	44_V	1.629	1.00
10_G	15_E	1.615	1.00
72_I	99_S	1.554	0.99
135_L	139_L	1.511	0.99
61_G	77_E	1.490	0.99
108_R	113_I	1.455	0.99
70_F	102_K	1.424	0.99
113_I	133_V	1.423	0.99
15_E	18_T	1.383	0.99
134_P	137_K	1.383	0.99
58_Q	76_D	1.322	0.98
92_I	119_I	1.320	0.98
6_R	62_L	1.320	0.98
89_S	114_M	1.315	0.98
122_E	131_K	1.310	0.98
28_Q	48_L	1.282	0.98
8_R	19_F	1.253	0.97
41_R	87_Y	1.249	0.97
88_A	116_T	1.245	0.97
6_R	50_A	1.241	0.97
5_F	23_V	1.239	0.97
93_E	97_I	1.221	0.97
5_F	21_K	1.217	0.97
113_I	131_K	1.209	0.96
83_L	113_I	1.161	0.96
114_M	132_L	1.152	0.95
77_E	80_S	1.147	0.95
67_G	99_S	1.141	0.95
116_T	132_L	1.093	0.94
63_Y	77_E	1.086	0.94
82_L	103_A	1.075	0.93
86_T	92_I	1.068	0.93
84_Q	114_M	1.047	0.92
73_D	96_E	1.047	0.92
52_K	55_R	1.035	0.92
92_I	99_S	1.008	0.91
28_Q	32_S	1.004	0.91
25_V	30_I	0.992	0.90
30_I	34_V	0.984	0.90
82_L	112_L	0.969	0.89
15_E	19_F	0.968	0.89
81_R	138_F	0.965	0.89
93_E	114_M	0.958	0.89
92_I	95_R	0.951	0.88
20_N	64_Y	0.929	0.87
52_K	115_I	0.918	0.86
28_Q	51_L	0.914	0.86
12_K	19_F	0.913	0.86
4_A	51_L	0.909	0.86
40_D	43_R	0.899	0.85
14_R	17_L	0.891	0.85
82_L	107_L	0.874	0.84
25_V	31_I	0.873	0.83
94_E	101_L	0.872	0.83
100_L	130_I	0.859	0.82
9_Y	63_Y	0.858	0.82
86_T	114_M	0.856	0.82
11_E	103_A	0.836	0.81
12_K	15_E	0.826	0.80
87_Y	117_Y	0.822	0.80
117_Y	135_L	0.817	0.79
16_R	35_A	0.806	0.78
103_A	107_L	0.785	0.76
91_K	94_E	0.777	0.76
61_G	86_T	0.775	0.75
15_E	33_R	0.768	0.75
45_M	85_V	0.752	0.73
105_E	129_K	0.751	0.73
83_L	102_K	0.750	0.73
13_P	17_L	0.748	0.73
20_N	43_R	0.745	0.73
29_G	32_S	0.745	0.73
31_I	35_A	0.738	0.72
53_L	74_F	0.716	0.70
7_P	21_K	0.716	0.70
32_S	37_R	0.714	0.69
67_G	70_F	0.708	0.69
65_V	72_I	0.707	0.69
93_E	121_G	0.706	0.68
10_G	75_Y	0.705	0.68
93_E	132_L	0.703	0.68
107_L	126_E	0.702	0.68
104_E	128_K	0.696	0.67
88_A	118_D	0.693	0.67
54_L	62_L	0.690	0.67
105_E	112_L	0.684	0.66
101_L	112_L	0.679	0.65
90_D	93_E	0.676	0.65
42_G	87_Y	0.672	0.65
45_M	117_Y	0.671	0.65
18_T	26_V	0.668	0.64
69_D	126_E	0.668	0.64
53_L	76_D	0.667	0.64
53_L	83_L	0.662	0.64
65_V	107_L	0.661	0.63
122_E	126_E	0.659	0.63
82_L	105_E	0.658	0.63
44_V	48_L	0.656	0.63
41_R	117_Y	0.656	0.63
52_K	57_N	0.651	0.62
9_Y	19_F	0.647	0.62
98_R	114_M	0.646	0.62
54_L	57_N	0.646	0.62
45_M	92_I	0.644	0.61
20_N	23_V	0.641	0.61
127_G	132_L	0.637	0.61
28_Q	43_R	0.634	0.60
105_E	128_K	0.634	0.60
22_K	71_E	0.633	0.60
49_V	135_L	0.623	0.59
16_R	36_L	0.621	0.59
75_Y	82_L	0.620	0.58
132_L	138_F	0.614	0.58
11_E	16_R	0.614	0.58
14_R	18_T	0.613	0.58
7_P	17_L	0.596	0.56
72_I	112_L	0.586	0.54
25_V	32_S	0.581	0.54
13_P	105_E	0.581	0.54
13_P	65_V	0.579	0.53
121_G	126_E	0.578	0.53
11_E	44_V	0.561	0.51
13_P	36_L	0.558	0.51
106_M	130_I	0.557	0.51
72_I	82_L	0.556	0.51
105_E	117_Y	0.555	0.50
69_D	102_K	0.554	0.50
125_R	128_K	0.553	0.50
37_R	80_S	0.552	0.50
84_Q	95_R	0.552	0.50
16_R	33_R	0.550	0.50
61_G	131_K	0.550	0.50
90_D	135_L	0.546	0.49
64_Y	103_A	0.545	0.49
118_D	139_L	0.545	0.49
41_R	119_I	0.545	0.49
10_G	23_V	0.543	0.49
103_A	112_L	0.542	0.49
119_I	132_L	0.541	0.49
89_S	119_I	0.541	0.49
5_F	10_G	0.540	0.48
10_G	65_V	0.537	0.48
107_L	112_L	0.536	0.48
78_V	83_L	0.532	0.47
37_R	43_R	0.530	0.47
113_I	117_Y	0.528	0.47
33_R	39_K	0.527	0.47
32_S	113_I	0.526	0.47
113_I	138_F	0.525	0.47
55_R	63_Y	0.519	0.46
101_L	127_G	0.518	0.46
68_K	102_K	0.517	0.46
21_K	62_L	0.516	0.45
122_E	132_L	0.515	0.45
114_M	120_E	0.515	0.45
103_A	106_M	0.515	0.45
118_D	132_L	0.513	0.45
9_Y	80_S	0.513	0.45
47_N	51_L	0.512	0.45
82_L	100_L	0.511	0.45
58_Q	78_V	0.511	0.45
95_R	116_T	0.510	0.45
93_E	130_I	0.506	0.44
88_A	132_L	0.504	0.44
13_P	82_L	0.503	0.44
62_L	139_L	0.501	0.44
41_R	135_L	0.501	0.44
97_I	101_L	0.500	0.43

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1y88A	5	0.7092	75.6	0.909	Contact Map
2eo0A	2	0.6738	71.6	0.912	Contact Map
1gefA	2	0.7021	60.9	0.918	Contact Map
4f0qA	4	0.9504	55.3	0.921	Contact Map
2wcwA	2	0.7163	54.9	0.921	Contact Map
1ob8A	1	0.6525	47	0.925	Contact Map
4oc8A	4	0.9645	38.6	0.928	Contact Map
1hh1A	2	0.6454	36.5	0.929	Contact Map
3fovA	2	0.6454	27.9	0.933	Contact Map
1xmxA	2	0.9858	26.8	0.934	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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