Q97WY6 - SULSO - GREMLIN Contacts

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Q97WY6 - Uncharacterized protein

UniProt:	Q97WY6	Sequences: MARRGNKAIRATVSMKIALSEPLLVLVNNYVKALRFTLFWLKENVPNPEEKGVLSKVHEALYEKLREEYNLPSKVAEDCYREALATYKGWYNNPRRGRFPRVYRPTVWLTPRASYNVDFEAMTVRIVSVGELSILGYPRNLKEYMGWKMKEARLVIRDDKAFLKVVFEKEEQKVEPKESIAVDINMAEVVVGKDDKNYVRIPTRLEEVHHWKSLAERLLKKYPRRWRENKRILYRVRSFHLKARRIMEDFARKVGKWVVDVAKRMGVNVIKLESLKNLIKSVEKLSKEFRDKLYLMQYRRLQYWISWQAKKRGMTVEFVNPSYSSVSCPKCGKRMVEVSHRWFKCSCGYENDRDVIAIMNLNGRGSLTLSTAPQMRDVNPNR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	382 (343)
Sequences:	4686 (3036)
Seq/√Len:	163.9

ECOLI - INSQ
HALSA - Q9HSW9 Q9HHJ9 Q9HHG8 Q9HM87 Q9HSW7 Q9HSD4 Q9HSZ6 Q9HHU6 Q9HSY4 Q9HHX8
SULSO - Q97WY6 Q97XQ8 Q97Y44 Q97YI2 Q97YW4 Q97V47 Q97V25 Q97XP1 Q97Y48 Q97YI5 Q97YU1 Q7LXH2 Q7LXD9 Q97U68 Q97XB6 Q97Z61 Q97Y67 Q97UQ8 Q97XQ0 Q97WZ3 Q97YW9 Q97U51 Q97X39 Q97V53 Q97XA4 Q7LXH6 Y2105 Q97YF7 Q97U09 Q7LX59 Q97YK6 Q7LXH9 Q7LX75

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
249_D	253_K	5.199	1.00
329_P	356_I	4.417	1.00
276_K	280_K	4.179	1.00
309_A	316_V	3.567	1.00
272_L	305_I	3.134	1.00
271_K	365_G	3.044	1.00
302_Q	318_F	2.935	1.00
189_V	301_L	2.933	1.00
256_K	260_D	2.850	1.00
300_R	304_W	2.812	1.00
323_Y	326_V	2.484	1.00
306_S	318_F	2.407	1.00
152_A	163_L	2.395	1.00
327_S	334_R	2.393	1.00
300_R	303_Y	2.340	1.00
259_V	309_A	2.301	1.00
319_V	361_L	2.293	1.00
208_V	291_D	2.268	1.00
301_L	305_I	2.227	1.00
270_I	309_A	2.214	1.00
252_R	307_W	2.203	1.00
282_V	294_Y	2.175	1.00
252_R	304_W	2.138	1.00
364_R	367_L	2.138	1.00
328_C	331_C	2.128	1.00
331_C	347_C	2.122	1.00
150_K	168_E	2.103	1.00
324_S	361_L	2.075	1.00
272_L	316_V	1.999	1.00
344_K	350_E	1.998	1.00
341_R	353_R	1.991	1.00
39_F	43_E	1.979	1.00
331_C	345_C	1.937	1.00
24_L	156_I	1.930	1.00
214_L	232_I	1.929	1.00
248_E	300_R	1.928	1.00
16_K	19_L	1.925	1.00
286_S	290_R	1.925	1.00
268_N	314_M	1.898	1.00
54_L	58_H	1.873	1.00
37_T	80_Y	1.871	1.00
287_K	290_R	1.871	1.00
326_V	336_V	1.869	1.00
252_R	308_Q	1.847	1.00
38_L	83_A	1.847	1.00
232_I	236_V	1.840	1.00
255_G	304_W	1.838	1.00
328_C	347_C	1.815	1.00
252_R	255_G	1.810	1.00
24_L	161_A	1.789	1.00
25_V	70_N	1.765	1.00
189_V	250_F	1.741	1.00
328_C	345_C	1.737	1.00
251_A	304_W	1.729	1.00
343_F	351_N	1.724	1.00
124_V	163_L	1.691	1.00
306_S	310_K	1.686	1.00
55_S	58_H	1.671	1.00
272_L	318_F	1.667	1.00
12_T	160_K	1.656	1.00
330_K	349_Y	1.609	1.00
182_V	190_V	1.584	1.00
338_V	341_R	1.574	1.00
207_E	246_I	1.573	1.00
227_R	230_K	1.572	1.00
54_L	81_R	1.572	1.00
217_R	221_K	1.570	1.00
62_Y	65_L	1.564	1.00
225_R	229_N	1.561	1.00
251_A	300_R	1.555	1.00
23_L	161_A	1.540	1.00
272_L	302_Q	1.539	1.00
274_S	318_F	1.534	1.00
55_S	59_E	1.533	1.00
273_E	321_P	1.532	1.00
255_G	307_W	1.487	1.00
230_K	233_L	1.483	1.00
93_N	96_R	1.458	1.00
335_M	343_F	1.457	1.00
179_S	362_N	1.443	1.00
62_Y	66_R	1.414	1.00
21_E	25_V	1.407	1.00
192_G	196_K	1.394	1.00
191_V	355_V	1.392	1.00
8_A	164_K	1.390	1.00
343_F	349_Y	1.384	1.00
342_W	350_E	1.383	1.00
125_R	131_E	1.367	1.00
241_L	245_R	1.362	1.00
20_S	24_L	1.344	1.00
93_N	97_G	1.341	1.00
218_L	233_L	1.340	1.00
74_K	111_P	1.339	1.00
306_S	316_V	1.335	1.00
37_T	83_A	1.335	1.00
160_K	241_L	1.329	1.00
359_M	363_G	1.317	1.00
59_E	62_Y	1.308	1.00
221_K	232_I	1.303	1.00
84_L	88_K	1.299	1.00
180_I	192_G	1.284	1.00
255_G	308_Q	1.284	1.00
255_G	301_L	1.283	1.00
329_P	359_M	1.270	1.00
89_G	96_R	1.266	1.00
27_V	161_A	1.254	1.00
259_V	312_R	1.252	1.00
74_K	113_A	1.244	1.00
158_D	241_L	1.233	1.00
61_L	80_Y	1.228	1.00
188_E	191_V	1.226	1.00
61_L	65_L	1.221	1.00
329_P	351_N	1.220	1.00
92_N	96_R	1.213	1.00
53_V	56_K	1.212	1.00
293_L	298_Y	1.203	1.00
182_V	192_G	1.200	1.00
110_T	126_I	1.199	1.00
30_Y	79_C	1.196	1.00
218_L	221_K	1.179	1.00
82_E	109_L	1.176	1.00
123_T	131_E	1.175	1.00
58_H	80_Y	1.175	1.00
338_V	353_R	1.170	1.00
214_L	239_F	1.169	1.00
78_D	81_R	1.158	1.00
85_A	89_G	1.157	1.00
58_H	81_R	1.141	1.00
179_S	269_V	1.140	1.00
176_P	268_N	1.137	1.00
17_I	20_S	1.135	1.00
184_I	298_Y	1.126	1.00
340_H	353_R	1.122	1.00
251_A	301_L	1.121	1.00
82_E	153_R	1.116	1.00
251_A	255_G	1.114	1.00
355_V	359_M	1.113	1.00
326_V	334_R	1.111	1.00
308_Q	311_K	1.109	1.00
217_R	220_K	1.102	1.00
34_L	79_C	1.099	1.00
41_L	57_V	1.090	1.00
181_A	362_N	1.089	1.00
88_K	92_N	1.085	1.00
15_M	19_L	1.084	1.00
40_W	60_A	1.083	1.00
304_W	307_W	1.079	1.00
276_K	321_P	1.077	0.99
255_G	305_I	1.074	0.99
219_L	223_P	1.073	0.99
42_K	46_P	1.067	0.99
329_P	349_Y	1.060	0.99
126_I	154_L	1.054	0.99
248_E	304_W	1.045	0.99
327_S	364_R	1.041	0.99
229_N	233_L	1.039	0.99
54_L	80_Y	1.036	0.99
134_I	137_Y	1.035	0.99
337_E	340_H	1.035	0.99
341_R	352_D	1.033	0.99
89_G	93_N	1.030	0.99
259_V	270_I	1.029	0.99
319_V	364_R	1.020	0.99
186_M	296_M	1.019	0.99
155_V	164_K	1.016	0.99
197_N	352_D	1.006	0.99
205_L	208_V	1.005	0.99
72_P	75_V	0.998	0.99
343_F	353_R	0.998	0.99
244_R	248_E	0.995	0.99
184_I	302_Q	0.991	0.99
212_K	216_E	0.990	0.99
9_I	167_F	0.981	0.99
256_K	312_R	0.979	0.99
207_E	243_A	0.975	0.99
321_P	324_S	0.963	0.99
260_D	312_R	0.959	0.99
210_H	214_L	0.953	0.99
74_K	78_D	0.949	0.99
259_V	314_M	0.949	0.99
212_K	215_A	0.948	0.99
28_N	31_V	0.947	0.99
108_W	112_R	0.947	0.99
319_V	365_G	0.946	0.99
211_W	236_V	0.946	0.99
73_S	113_A	0.945	0.99
351_N	359_M	0.945	0.99
15_M	23_L	0.934	0.99
34_L	83_A	0.930	0.99
324_S	364_R	0.930	0.99
329_P	357_A	0.928	0.98
38_L	87_Y	0.927	0.98
215_A	219_L	0.916	0.98
211_W	219_L	0.915	0.98
333_K	346_S	0.911	0.98
351_N	355_V	0.911	0.98
282_V	286_S	0.908	0.98
214_L	217_R	0.907	0.98
89_G	97_G	0.904	0.98
337_E	343_F	0.904	0.98
257_W	266_G	0.902	0.98
214_L	236_V	0.901	0.98
323_Y	334_R	0.900	0.98
274_S	321_P	0.900	0.98
32_K	36_F	0.899	0.98
239_F	243_A	0.899	0.98
116_N	125_R	0.898	0.98
42_K	87_Y	0.898	0.98
58_H	62_Y	0.895	0.98
39_F	102_V	0.892	0.98
119_F	122_M	0.891	0.98
89_G	92_N	0.890	0.98
271_K	361_L	0.890	0.98
90_W	100_P	0.886	0.98
340_H	343_F	0.884	0.98
269_V	315_T	0.883	0.98
118_D	125_R	0.883	0.98
188_E	199_V	0.882	0.98
222_Y	225_R	0.882	0.98
193_K	358_I	0.881	0.98
303_Y	306_S	0.878	0.98
258_V	270_I	0.876	0.98
286_S	289_F	0.873	0.98
34_L	86_T	0.868	0.98
153_R	164_K	0.868	0.98
309_A	314_M	0.863	0.98
235_R	238_S	0.862	0.98
282_V	290_R	0.861	0.98
179_S	366_S	0.859	0.97
40_W	44_N	0.859	0.97
11_A	163_L	0.857	0.97
20_S	161_A	0.856	0.97
193_K	355_V	0.854	0.97
116_N	119_F	0.854	0.97
356_I	360_N	0.853	0.97
74_K	112_R	0.853	0.97
286_S	294_Y	0.853	0.97
357_A	360_N	0.853	0.97
342_W	351_N	0.853	0.97
180_I	270_I	0.852	0.97
191_V	197_N	0.850	0.97
61_L	77_E	0.848	0.97
200_R	203_T	0.845	0.97
179_S	271_K	0.843	0.97
129_V	132_L	0.842	0.97
93_N	98_R	0.842	0.97
108_W	111_P	0.841	0.97
42_K	99_F	0.839	0.97
37_T	57_V	0.838	0.97
333_K	343_F	0.837	0.97
36_F	40_W	0.836	0.97
156_I	161_A	0.835	0.97
277_N	299_R	0.835	0.97
77_E	81_R	0.831	0.97
299_R	303_Y	0.831	0.97
242_K	246_I	0.827	0.97
289_F	293_L	0.825	0.97
218_L	232_I	0.824	0.97
114_S	117_V	0.824	0.97
329_P	363_G	0.816	0.97
269_V	317_E	0.814	0.97
188_E	197_N	0.814	0.97
28_N	32_K	0.813	0.97
203_T	246_I	0.812	0.96
355_V	358_I	0.809	0.96
180_I	267_V	0.806	0.96
274_S	302_Q	0.805	0.96
41_L	84_L	0.803	0.96
65_L	76_A	0.803	0.96
54_L	57_V	0.798	0.96
256_K	308_Q	0.796	0.96
154_L	163_L	0.796	0.96
213_S	217_R	0.793	0.96
211_W	215_A	0.792	0.96
48_P	51_K	0.792	0.96
78_D	111_P	0.790	0.96
178_E	268_N	0.788	0.96
359_M	362_N	0.788	0.96
186_M	292_K	0.786	0.96
184_I	190_V	0.784	0.96
219_L	222_Y	0.783	0.96
114_S	127_V	0.783	0.96
275_L	321_P	0.782	0.96
177_K	268_N	0.782	0.96
251_A	297_Q	0.780	0.96
147_W	167_F	0.780	0.96
23_L	27_V	0.777	0.95
71_L	74_K	0.777	0.95
44_N	48_P	0.774	0.95
44_N	52_G	0.771	0.95
40_W	43_E	0.769	0.95
330_K	359_M	0.768	0.95
78_D	82_E	0.764	0.95
187_A	191_V	0.764	0.95
285_L	289_F	0.760	0.95
250_F	254_V	0.759	0.95
92_N	97_G	0.759	0.95
151_E	166_V	0.758	0.95
183_D	354_D	0.753	0.95
323_Y	364_R	0.751	0.95
338_V	352_D	0.751	0.95
74_K	77_E	0.751	0.95
186_M	282_V	0.750	0.95
12_T	162_F	0.746	0.94
185_N	191_V	0.746	0.94
277_N	281_S	0.745	0.94
190_V	254_V	0.743	0.94
214_L	221_K	0.743	0.94
254_V	257_W	0.742	0.94
196_K	257_W	0.737	0.94
43_E	47_N	0.737	0.94
271_K	317_E	0.736	0.94
335_M	340_H	0.735	0.94
202_P	205_L	0.733	0.94
115_Y	119_F	0.732	0.94
178_E	267_V	0.731	0.94
22_P	26_L	0.728	0.94
226_W	229_N	0.728	0.94
270_I	305_I	0.728	0.94
215_A	236_V	0.726	0.94
211_W	243_A	0.725	0.94
194_D	267_V	0.723	0.93
45_V	87_Y	0.721	0.93
78_D	109_L	0.720	0.93
109_L	151_E	0.717	0.93
40_W	57_V	0.715	0.93
137_Y	141_L	0.712	0.93
26_L	30_Y	0.712	0.93
60_A	64_K	0.710	0.93
193_K	197_N	0.707	0.93
18_A	21_E	0.706	0.93
17_I	21_E	0.705	0.93
118_D	121_A	0.704	0.92
29_N	32_K	0.703	0.92
73_S	114_S	0.702	0.92
79_C	83_A	0.701	0.92
108_W	115_Y	0.700	0.92
204_R	207_E	0.700	0.92
41_L	87_Y	0.700	0.92
287_K	294_Y	0.699	0.92
218_L	236_V	0.698	0.92
327_S	360_N	0.697	0.92
87_Y	91_Y	0.697	0.92
29_N	69_Y	0.696	0.92
90_W	93_N	0.695	0.92
317_E	365_G	0.694	0.92
326_V	335_M	0.694	0.92
216_E	219_L	0.693	0.92
247_M	295_L	0.693	0.92
219_L	236_V	0.693	0.92
189_V	296_M	0.692	0.92
335_M	353_R	0.691	0.92
33_A	79_C	0.690	0.92
233_L	237_R	0.688	0.92
86_T	100_P	0.687	0.92
307_W	311_K	0.687	0.92
87_Y	90_W	0.686	0.92
80_Y	83_A	0.686	0.92
109_L	153_R	0.683	0.91
215_A	218_L	0.683	0.91
180_I	193_K	0.680	0.91
45_V	49_E	0.680	0.91
267_V	314_M	0.679	0.91
175_E	178_E	0.678	0.91
225_R	230_K	0.675	0.91
137_Y	140_N	0.674	0.91
215_A	240_H	0.674	0.91
32_K	69_Y	0.674	0.91
160_K	245_R	0.664	0.90
26_L	110_T	0.663	0.90
230_K	234_Y	0.662	0.90
200_R	296_M	0.659	0.90
211_W	240_H	0.656	0.90
83_A	87_Y	0.655	0.90
243_A	295_L	0.652	0.89
192_G	258_V	0.651	0.89
351_N	356_I	0.650	0.89
13_V	163_L	0.649	0.89
271_K	362_N	0.647	0.89
198_Y	250_F	0.646	0.89
197_N	355_V	0.643	0.89
280_K	321_P	0.642	0.89
189_V	255_G	0.636	0.88
26_L	72_P	0.636	0.88
183_D	325_S	0.634	0.88
221_K	228_E	0.634	0.88
217_R	232_I	0.631	0.88
10_R	155_V	0.631	0.88
240_H	247_M	0.630	0.88
304_W	308_Q	0.630	0.88
51_K	57_V	0.627	0.87
338_V	342_W	0.626	0.87
80_Y	84_L	0.624	0.87
190_V	301_L	0.624	0.87
181_A	271_K	0.623	0.87
25_V	29_N	0.622	0.87
150_K	166_V	0.621	0.87
228_E	231_R	0.621	0.87
110_T	113_A	0.619	0.87
183_D	273_E	0.617	0.87
248_E	252_R	0.616	0.86
260_D	269_V	0.615	0.86
29_N	71_L	0.615	0.86
115_Y	149_M	0.614	0.86
39_F	42_K	0.614	0.86
210_H	217_R	0.610	0.86
74_K	114_S	0.608	0.86
171_E	310_K	0.605	0.86
322_S	326_V	0.605	0.86
115_Y	152_A	0.605	0.86
124_V	152_A	0.601	0.85
123_T	133_S	0.600	0.85
10_R	164_K	0.595	0.85
45_V	90_W	0.594	0.84
333_K	337_E	0.593	0.84
11_A	139_R	0.593	0.84
93_N	99_F	0.592	0.84
229_N	232_I	0.591	0.84
37_T	61_L	0.591	0.84
73_S	111_P	0.587	0.84
181_A	193_K	0.586	0.84
245_R	248_E	0.586	0.84
58_H	65_L	0.585	0.84
327_S	343_F	0.585	0.84
187_A	341_R	0.585	0.84
76_A	79_C	0.585	0.84
71_L	76_A	0.584	0.83
216_E	220_K	0.583	0.83
222_Y	229_N	0.579	0.83
330_K	351_N	0.578	0.83
111_P	115_Y	0.578	0.83
281_S	293_L	0.576	0.83
22_P	25_V	0.575	0.83
112_R	115_Y	0.573	0.82
245_R	249_D	0.572	0.82
305_I	316_V	0.572	0.82
41_L	44_N	0.571	0.82
107_V	110_T	0.569	0.82
8_A	166_V	0.569	0.82
14_S	135_L	0.568	0.82
53_V	58_H	0.568	0.82
36_F	64_K	0.568	0.82
26_L	71_L	0.567	0.82
251_A	254_V	0.565	0.81
337_E	353_R	0.565	0.81
229_N	236_V	0.561	0.81
57_V	60_A	0.560	0.81
113_A	116_N	0.559	0.81
286_S	293_L	0.558	0.81
289_F	292_K	0.556	0.80
280_K	293_L	0.556	0.80
361_L	364_R	0.554	0.80
309_A	312_R	0.554	0.80
110_T	115_Y	0.554	0.80
323_Y	327_S	0.553	0.80
334_R	337_E	0.552	0.80
214_L	219_L	0.552	0.80
335_M	351_N	0.552	0.80
33_A	76_A	0.551	0.80
340_H	352_D	0.550	0.80
204_R	208_V	0.550	0.80
11_A	140_N	0.549	0.80
271_K	364_R	0.548	0.79
56_K	59_E	0.547	0.79
15_M	132_L	0.546	0.79
109_L	115_Y	0.546	0.79
107_V	115_Y	0.545	0.79
34_L	38_L	0.545	0.79
52_G	57_V	0.544	0.79
109_L	112_R	0.544	0.79
62_Y	80_Y	0.542	0.79
110_T	114_S	0.540	0.78
297_Q	300_R	0.540	0.78
243_A	247_M	0.539	0.78
50_E	56_K	0.538	0.78
240_H	244_R	0.536	0.78
62_Y	67_E	0.535	0.78
181_A	358_I	0.533	0.78
15_M	20_S	0.533	0.78
41_L	45_V	0.530	0.77
189_V	251_A	0.530	0.77
157_R	241_L	0.529	0.77
107_V	111_P	0.528	0.77
44_N	50_E	0.528	0.77
63_E	66_R	0.528	0.77
212_K	217_R	0.528	0.77
30_Y	108_W	0.527	0.77
327_S	332_G	0.527	0.77
122_M	125_R	0.525	0.77
52_G	58_H	0.524	0.76
349_Y	356_I	0.524	0.76
127_V	132_L	0.521	0.76
253_K	256_K	0.520	0.76
45_V	91_Y	0.519	0.76
185_N	188_E	0.516	0.75
198_Y	254_V	0.515	0.75
181_A	273_E	0.515	0.75
344_K	349_Y	0.514	0.75
58_H	77_E	0.514	0.75
215_A	223_P	0.513	0.75
90_W	99_F	0.513	0.75
31_V	106_T	0.513	0.75
30_Y	34_L	0.510	0.74
198_Y	257_W	0.509	0.74
352_D	357_A	0.509	0.74
254_V	301_L	0.509	0.74
201_I	204_R	0.508	0.74
324_S	360_N	0.508	0.74
25_V	28_N	0.506	0.74
302_Q	306_S	0.505	0.74
23_L	108_W	0.504	0.74
51_K	84_L	0.502	0.73
111_P	114_S	0.501	0.73
91_Y	100_P	0.500	0.73

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1nu0A	1	0.3403	95.6	0.923	Contact Map
1vhxA	2	0.3586	94.8	0.926	Contact Map
1iv0A	1	0.2539	93.5	0.931	Contact Map
1qypA	1	0.1126	72.9	0.948	Contact Map
4aybP	1	0.1047	58.1	0.953	Contact Map
2k4xA	1	0.1361	53.7	0.954	Contact Map
1ffkW	1	0.1832	50.6	0.955	Contact Map
1gh9A	1	0.1859	48	0.956	Contact Map
4c2mI	1	0.1649	43.5	0.957	Contact Map
4ep4A	2	0.4188	42	0.957	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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