Q97WW7 - SULSO - GREMLIN Contacts

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Q97WW7 - Uncharacterized protein

UniProt:	Q97WW7	Sequences: MIKRLKIKNFKSYRDSEFEFEKVSIVVGPNGSGKTNLVDAFSFLKQLIRPLSYPPYPFIRWGDYKNVVFMQDENLDISFEIDGEYKGKDYHYEISLNKLQIKKEIINFDSYSMERRGNVIRYENKEMTIPDNLSVFNLFFAQPFIIAYNLNFTLPPELLNFMTNFLNDVGVFRIVPQIAVSPVHFTFPEALDENGRGLVKVISNNLSRINETKQVYDFLVENNISLRPVFTEDGNIRLHFIEKSENNKELILLPASVPDGFIKMLTIIIAVYLLKMSTIIIDEIENSLHLKYIERLVDIMRYSDSQFIATTHSPLIIDFMDPFRNNNS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	328 (286)
Sequences:	14536 (11109)
Seq/√Len:	656.9

ECOLI - YBJD RECF RECN
BACSU - RECN RECF
SULSO - Q97WW7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
4_R	19_E	3.672	1.00
4_R	17_E	3.348	1.00
25_I	320_M	2.838	1.00
196_R	238_L	2.725	1.00
314_P	318_D	2.370	1.00
20_F	24_S	2.368	1.00
119_V	123_E	2.331	1.00
294_E	298_D	2.325	1.00
7_I	10_F	2.283	1.00
202_I	206_L	2.248	1.00
105_I	109_D	2.237	1.00
24_S	306_Q	2.235	1.00
59_I	62_G	2.234	1.00
23_V	309_A	2.220	1.00
169_V	172_F	2.201	1.00
99_L	102_K	2.146	1.00
288_L	296_L	2.097	1.00
235_N	239_H	2.090	1.00
6_K	17_E	2.078	1.00
188_P	192_D	2.034	1.00
6_K	19_E	2.016	1.00
291_K	294_E	1.964	1.00
301_R	319_F	1.958	1.00
58_F	61_W	1.908	1.00
121_R	124_N	1.881	1.00
293_I	313_S	1.875	1.00
149_N	153_T	1.834	1.00
8_K	15_D	1.786	1.00
175_V	178_I	1.765	1.00
92_Y	97_N	1.755	1.00
199_V	203_S	1.734	1.00
297_V	316_I	1.716	1.00
12_S	36_N	1.709	1.00
6_K	15_D	1.679	1.00
123_E	126_E	1.675	1.00
77_I	81_I	1.666	1.00
226_L	230_F	1.644	1.00
104_E	108_F	1.642	1.00
99_L	103_K	1.636	1.00
161_F	165_F	1.630	1.00
60_R	64_Y	1.623	1.00
99_L	104_E	1.615	1.00
89_D	92_Y	1.610	1.00
155_P	159_L	1.605	1.00
31_G	258_P	1.594	1.00
198_L	202_I	1.576	1.00
66_N	69_F	1.554	1.00
174_I	178_I	1.542	1.00
91_H	94_I	1.528	1.00
118_N	121_R	1.524	1.00
101_I	104_E	1.519	1.00
13_Y	16_S	1.505	1.00
159_L	163_T	1.505	1.00
123_E	127_M	1.502	1.00
59_I	63_D	1.497	1.00
27_V	317_I	1.494	1.00
58_F	63_D	1.489	1.00
117_G	121_R	1.488	1.00
61_W	64_Y	1.485	1.00
195_G	199_V	1.485	1.00
119_V	122_Y	1.473	1.00
92_Y	95_S	1.470	1.00
103_K	107_N	1.442	1.00
154_L	158_L	1.430	1.00
101_I	105_I	1.425	1.00
95_S	98_K	1.421	1.00
104_E	109_D	1.415	1.00
94_I	97_N	1.408	1.00
159_L	165_F	1.407	1.00
79_F	83_G	1.395	1.00
192_D	251_I	1.394	1.00
155_P	165_F	1.394	1.00
102_K	109_D	1.392	1.00
121_R	125_K	1.388	1.00
100_Q	104_E	1.360	1.00
228_P	232_E	1.357	1.00
114_E	117_G	1.357	1.00
93_E	97_N	1.354	1.00
223_N	228_P	1.345	1.00
42_S	47_L	1.339	1.00
60_R	63_D	1.333	1.00
118_N	124_N	1.333	1.00
118_N	123_E	1.325	1.00
91_H	95_S	1.320	1.00
182_P	186_T	1.319	1.00
7_I	13_Y	1.305	1.00
174_I	177_Q	1.304	1.00
199_V	238_L	1.302	1.00
124_N	127_M	1.301	1.00
116_R	123_E	1.286	1.00
224_I	228_P	1.285	1.00
116_R	119_V	1.277	1.00
117_G	123_E	1.268	1.00
117_G	122_Y	1.267	1.00
105_I	108_F	1.266	1.00
122_Y	127_M	1.266	1.00
178_I	182_P	1.262	1.00
158_L	161_F	1.257	1.00
116_R	122_Y	1.255	1.00
93_E	96_L	1.254	1.00
103_K	109_D	1.253	1.00
223_N	226_L	1.251	1.00
67_V	71_Q	1.249	1.00
101_I	109_D	1.238	1.00
78_S	81_I	1.237	1.00
89_D	93_E	1.229	1.00
101_I	106_I	1.218	1.00
118_N	122_Y	1.213	1.00
166_L	169_V	1.207	1.00
176_P	180_V	1.205	1.00
195_G	202_I	1.202	1.00
72_D	75_L	1.201	1.00
223_N	230_F	1.194	1.00
155_P	158_L	1.189	1.00
196_R	243_K	1.186	1.00
294_E	319_F	1.182	1.00
119_V	124_N	1.176	1.00
107_N	110_S	1.173	1.00
102_K	110_S	1.164	1.00
58_F	62_G	1.157	1.00
116_R	127_M	1.154	1.00
194_N	197_G	1.153	1.00
176_P	182_P	1.151	1.00
102_K	105_I	1.148	1.00
26_V	308_I	1.148	1.00
90_Y	93_E	1.143	1.00
200_K	203_S	1.132	1.00
173_R	176_P	1.125	1.00
129_I	132_N	1.118	1.00
143_P	146_I	1.115	1.00
61_W	65_K	1.111	1.00
116_R	124_N	1.109	1.00
158_L	165_F	1.101	1.00
121_R	126_E	1.097	1.00
103_K	106_I	1.087	1.00
297_V	319_F	1.086	1.00
62_G	65_K	1.079	1.00
121_R	127_M	1.076	1.00
102_K	106_I	1.070	1.00
117_G	126_E	1.069	1.00
222_N	228_P	1.067	1.00
165_F	172_F	1.058	1.00
59_I	64_Y	1.057	1.00
119_V	125_K	1.057	1.00
200_K	204_N	1.045	1.00
124_N	128_T	1.040	1.00
66_N	70_M	1.038	1.00
145_I	149_N	1.034	1.00
181_S	185_F	1.027	1.00
197_G	200_K	1.025	1.00
11_K	66_N	1.013	1.00
119_V	127_M	1.013	1.00
184_H	187_F	1.013	1.00
105_I	110_S	1.010	1.00
145_I	148_Y	1.004	1.00
122_Y	126_E	1.004	1.00
117_G	124_N	1.003	1.00
173_R	177_Q	0.999	1.00
143_P	149_N	0.998	1.00
178_I	181_S	0.998	1.00
154_L	159_L	0.997	1.00
298_D	301_R	0.994	1.00
147_A	152_F	0.992	1.00
82_D	85_Y	0.992	1.00
118_N	127_M	0.991	1.00
114_E	118_N	0.989	1.00
223_N	227_R	0.989	1.00
83_G	87_G	0.984	1.00
177_Q	180_V	0.981	1.00
278_T	308_I	0.975	1.00
146_I	150_L	0.965	1.00
42_S	46_Q	0.964	1.00
160_N	163_T	0.963	1.00
114_E	122_Y	0.957	1.00
67_V	70_M	0.955	1.00
85_Y	88_K	0.949	1.00
116_R	125_K	0.949	1.00
90_Y	94_I	0.947	1.00
202_I	205_N	0.946	1.00
165_F	169_V	0.944	1.00
195_G	201_V	0.944	1.00
199_V	202_I	0.935	1.00
119_V	126_E	0.934	1.00
300_M	307_F	0.933	1.00
103_K	108_F	0.932	1.00
239_H	302_Y	0.921	1.00
294_E	315_L	0.920	1.00
10_F	13_Y	0.918	1.00
143_P	147_A	0.918	1.00
300_M	309_A	0.909	1.00
100_Q	103_K	0.909	1.00
89_D	95_S	0.908	1.00
154_L	165_F	0.906	1.00
8_K	17_E	0.903	1.00
188_P	191_L	0.901	1.00
59_I	65_K	0.894	1.00
173_R	178_I	0.892	1.00
311_T	317_I	0.890	1.00
222_N	226_L	0.890	1.00
237_R	241_I	0.890	1.00
116_R	121_R	0.887	1.00
79_F	82_D	0.887	1.00
279_I	307_F	0.886	1.00
8_K	19_E	0.884	1.00
298_D	302_Y	0.878	1.00
91_H	96_L	0.877	1.00
99_L	109_D	0.877	1.00
107_N	111_Y	0.876	1.00
72_D	76_D	0.874	1.00
77_I	82_D	0.874	1.00
77_I	80_E	0.871	1.00
154_L	157_E	0.869	1.00
44_L	308_I	0.869	1.00
115_R	121_R	0.868	1.00
189_E	192_D	0.867	1.00
106_I	109_D	0.863	1.00
69_F	72_D	0.863	1.00
177_Q	181_S	0.854	1.00
99_L	105_I	0.847	1.00
158_L	162_M	0.844	1.00
81_I	85_Y	0.840	1.00
195_G	198_L	0.835	1.00
102_K	108_F	0.835	1.00
160_N	164_N	0.834	1.00
41_F	280_I	0.832	1.00
315_L	318_D	0.831	1.00
145_I	150_L	0.826	1.00
80_E	83_G	0.822	1.00
99_L	108_F	0.820	1.00
10_F	40_A	0.819	1.00
162_M	166_L	0.818	1.00
73_E	76_D	0.816	1.00
239_H	242_E	0.813	1.00
190_A	198_L	0.808	1.00
69_F	74_N	0.807	1.00
227_R	231_T	0.807	1.00
117_G	125_K	0.806	1.00
180_V	184_H	0.805	1.00
176_P	183_V	0.804	1.00
79_F	85_Y	0.803	1.00
188_P	202_I	0.803	1.00
43_F	47_L	0.803	1.00
115_R	124_N	0.802	1.00
131_D	135_V	0.800	1.00
176_P	185_F	0.800	1.00
97_N	191_L	0.798	1.00
155_P	166_L	0.797	1.00
156_P	159_L	0.792	1.00
120_I	125_K	0.791	1.00
163_T	167_N	0.789	1.00
102_K	107_N	0.788	1.00
161_F	164_N	0.788	1.00
279_I	305_S	0.785	1.00
282_D	285_E	0.784	1.00
104_E	110_S	0.783	1.00
192_D	195_G	0.781	1.00
118_N	126_E	0.780	1.00
182_P	187_F	0.780	1.00
238_L	242_E	0.778	1.00
114_E	123_E	0.777	1.00
90_Y	97_N	0.775	1.00
70_M	73_E	0.774	1.00
114_E	119_V	0.773	1.00
122_Y	125_K	0.772	1.00
238_L	243_K	0.771	1.00
9_N	15_D	0.767	1.00
199_V	206_L	0.766	1.00
80_E	84_E	0.765	1.00
179_A	185_F	0.762	1.00
84_E	87_G	0.761	1.00
163_T	166_L	0.757	1.00
100_Q	105_I	0.757	1.00
281_I	300_M	0.753	1.00
173_R	181_S	0.753	1.00
114_E	121_R	0.753	1.00
20_F	308_I	0.752	1.00
199_V	235_N	0.747	1.00
135_V	142_Q	0.745	1.00
203_S	206_L	0.742	1.00
71_Q	76_D	0.741	1.00
162_M	165_F	0.740	1.00
115_R	118_N	0.736	1.00
177_Q	184_H	0.732	1.00
101_I	108_F	0.732	1.00
166_L	171_V	0.731	1.00
176_P	181_S	0.729	1.00
99_L	110_S	0.726	1.00
174_I	181_S	0.724	1.00
276_M	305_S	0.723	1.00
68_V	75_L	0.723	1.00
120_I	123_E	0.720	1.00
149_N	152_F	0.720	1.00
103_K	110_S	0.719	1.00
29_P	32_S	0.719	1.00
75_L	79_F	0.716	1.00
92_Y	98_K	0.709	1.00
189_E	193_E	0.708	1.00
195_G	206_L	0.706	1.00
165_F	168_D	0.705	1.00
193_E	197_G	0.705	1.00
173_R	183_V	0.704	1.00
83_G	86_K	0.702	1.00
181_S	184_H	0.701	1.00
77_I	85_Y	0.699	1.00
163_T	169_V	0.697	1.00
58_F	65_K	0.696	1.00
147_A	151_N	0.693	1.00
178_I	183_V	0.691	1.00
67_V	75_L	0.691	1.00
89_D	97_N	0.682	1.00
80_E	85_Y	0.678	1.00
143_P	153_T	0.678	1.00
227_R	230_F	0.676	1.00
92_Y	96_L	0.674	1.00
190_A	202_I	0.673	1.00
222_N	225_S	0.671	1.00
43_F	49_R	0.670	1.00
155_P	161_F	0.670	1.00
191_L	195_G	0.669	1.00
43_F	46_Q	0.668	1.00
244_S	248_K	0.667	1.00
143_P	148_Y	0.666	1.00
120_I	127_M	0.666	1.00
114_E	124_N	0.663	1.00
179_A	183_V	0.661	1.00
174_I	182_P	0.660	1.00
147_A	150_L	0.660	1.00
164_N	167_N	0.659	1.00
31_G	261_F	0.655	1.00
161_F	168_D	0.653	1.00
175_V	186_T	0.650	1.00
285_E	313_S	0.650	1.00
45_K	49_R	0.646	1.00
222_N	230_F	0.646	1.00
194_N	201_V	0.643	1.00
115_R	122_Y	0.642	1.00
176_P	179_A	0.640	1.00
159_L	166_L	0.637	1.00
156_P	165_F	0.637	1.00
167_N	170_G	0.635	1.00
180_V	186_T	0.635	1.00
183_V	187_F	0.634	1.00
179_A	182_P	0.628	1.00
129_I	133_L	0.627	1.00
175_V	182_P	0.625	1.00
90_Y	96_L	0.623	1.00
192_D	196_R	0.623	1.00
174_I	186_T	0.622	1.00
203_S	231_T	0.620	1.00
81_I	84_E	0.620	1.00
121_R	128_T	0.618	1.00
285_E	316_I	0.618	1.00
275_K	304_D	0.618	1.00
118_N	125_K	0.617	1.00
221_E	224_I	0.616	1.00
145_I	152_F	0.613	1.00
298_D	319_F	0.610	1.00
7_I	40_A	0.610	1.00
81_I	86_K	0.609	1.00
79_F	86_K	0.604	1.00
178_I	185_F	0.603	1.00
99_L	106_I	0.602	1.00
178_I	186_T	0.600	1.00
158_L	169_V	0.598	1.00
115_R	123_E	0.598	1.00
173_R	186_T	0.596	1.00
119_V	128_T	0.595	1.00
224_I	232_E	0.586	1.00
174_I	180_V	0.586	1.00
26_V	40_A	0.584	1.00
290_L	314_P	0.583	1.00
21_E	24_S	0.583	1.00
100_Q	110_S	0.582	1.00
45_K	48_I	0.581	1.00
93_E	98_K	0.581	1.00
182_P	185_F	0.581	1.00
47_L	51_L	0.581	1.00
181_S	186_T	0.580	1.00
201_V	204_N	0.580	1.00
176_P	184_H	0.578	1.00
150_L	153_T	0.577	1.00
155_P	162_M	0.577	1.00
71_Q	75_L	0.574	1.00
259_D	287_S	0.571	1.00
197_G	201_V	0.571	1.00
277_S	305_S	0.568	1.00
194_N	202_I	0.567	1.00
77_I	83_G	0.566	1.00
82_D	86_K	0.565	1.00
99_L	107_N	0.565	1.00
148_Y	152_F	0.562	1.00
91_H	97_N	0.556	1.00
158_L	166_L	0.555	1.00
106_I	110_S	0.555	1.00
148_Y	151_N	0.553	1.00
183_V	186_T	0.552	1.00
194_N	206_L	0.551	1.00
147_A	153_T	0.550	1.00
175_V	181_S	0.547	1.00
163_T	168_D	0.545	1.00
125_K	128_T	0.545	1.00
155_P	172_F	0.541	1.00
89_D	94_I	0.541	1.00
122_Y	128_T	0.540	1.00
263_K	287_S	0.538	1.00
254_P	262_I	0.536	1.00
173_R	185_F	0.535	1.00
293_I	297_V	0.533	1.00
196_R	199_V	0.527	0.99
159_L	162_M	0.525	0.99
301_R	321_D	0.522	0.99
173_R	179_A	0.520	0.99
174_I	183_V	0.520	0.99
114_E	127_M	0.520	0.99
154_L	161_F	0.519	0.99
90_Y	98_K	0.518	0.99
117_G	128_T	0.517	0.99
25_I	309_A	0.517	0.99
116_R	120_I	0.515	0.99
31_G	257_V	0.514	0.99
175_V	180_V	0.514	0.99
66_N	71_Q	0.510	0.99
190_A	193_E	0.507	0.99
159_L	172_F	0.506	0.99
164_N	168_D	0.504	0.99
75_L	81_I	0.504	0.99
131_D	134_S	0.503	0.99
156_P	166_L	0.501	0.99
295_R	298_D	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3auyA	2	0.936	100	0.467	Contact Map
4ad8A	1	0.9207	100	0.476	Contact Map
3qktA	2	0.9055	100	0.479	Contact Map
4i99A	2	0.8628	100	0.481	Contact Map
1w1wA	2	0.7988	100	0.487	Contact Map
3zgxA	2	0.8262	100	0.493	Contact Map
4abyA	1	0.8902	100	0.498	Contact Map
3qf7A	2	0.9207	100	0.505	Contact Map
4ux3A	1	0.9207	100	0.518	Contact Map
1e69A	1	0.7287	100	0.525	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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