Q97WU6 - SULSO - GREMLIN Contacts

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Q97WU6 - Ring oxydation complex/ phenylacetic acid degradation related protein

UniProt:	Q97WU6	Sequences: MMVVVEYKKPKRVVGWGEYKGLRKFESIYDLPPEAVEVLFKLLSVQGDTEFASIEQHMPWLIHAPKLSDRVTISRIMVDEMRHGWQVIQILKEFGEEGKKIAEDLLSRRMGRHKLDAFNIPFNMWEDTLGFTFLIDRVGMFQLLAFEDSSFGPLSRIIPTMMMEEEFHINFGYTGIKKLVEEGKRDLAQALINKWFPRGLDMFGHSKSITIDLAYKYGIKKMRNDEMRQLYIKDIKELITPLGLELPDINRNRRVY	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	256 (213)
Sequences:	1402 (695)
Seq/√Len:	47.6

ECOLI - PAAA PAAC
SULSO - Q97WU6 Q97YL1 Q97WU5 Q97YL0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
189_Q	193_N	4.319	1.00
99_K	102_A	3.908	1.00
47_G	88_I	3.752	1.00
38_V	213_L	3.340	1.00
45_V	208_S	3.161	1.00
54_I	81_M	3.037	1.00
69_D	171_F	3.019	1.00
189_Q	245_E	3.011	1.00
115_L	202_M	2.991	1.00
55_E	58_M	2.858	1.00
134_L	192_I	2.721	1.00
185_R	243_G	2.620	1.00
120_I	198_R	2.539	1.00
214_A	220_K	2.494	1.00
181_E	243_G	2.440	1.00
126_E	191_L	2.417	1.00
130_G	188_A	2.412	1.00
185_R	189_Q	2.385	1.00
176_I	188_A	2.304	1.00
205_H	223_R	2.162	1.00
133_F	176_I	2.143	1.00
137_R	169_I	2.100	1.00
87_V	154_L	2.035	1.00
90_I	153_P	2.010	0.99
92_K	98_G	1.993	0.99
41_K	113_H	1.979	0.99
236_K	246_L	1.953	0.99
199_G	231_Y	1.951	0.99
87_V	143_L	1.896	0.99
124_M	187_L	1.875	0.99
143_L	165_E	1.778	0.99
129_L	176_I	1.711	0.98
40_F	94_F	1.707	0.98
90_I	151_F	1.682	0.98
130_G	192_I	1.649	0.98
205_H	225_D	1.605	0.97
124_M	127_D	1.602	0.97
180_V	188_A	1.598	0.97
88_I	103_E	1.596	0.97
186_D	190_A	1.573	0.97
74_S	81_M	1.571	0.97
85_W	100_K	1.559	0.97
127_D	194_K	1.539	0.97
236_K	240_T	1.535	0.97
211_I	214_A	1.517	0.96
228_R	232_I	1.511	0.96
64_A	125_W	1.501	0.96
136_D	139_G	1.487	0.96
101_I	107_S	1.457	0.95
223_R	226_E	1.420	0.95
143_L	171_F	1.415	0.94
189_Q	243_G	1.411	0.94
133_F	238_L	1.393	0.94
140_M	162_M	1.391	0.94
189_Q	239_I	1.379	0.94
92_K	95_G	1.376	0.94
141_F	234_D	1.366	0.93
152_G	156_R	1.361	0.93
145_A	230_L	1.348	0.93
108_R	111_G	1.344	0.93
212_D	216_K	1.332	0.92
133_F	172_G	1.299	0.92
133_F	235_I	1.277	0.91
43_L	94_F	1.271	0.91
237_E	241_P	1.262	0.90
130_G	176_I	1.247	0.90
232_I	236_K	1.245	0.90
139_G	165_E	1.242	0.90
134_L	195_W	1.239	0.89
209_I	212_D	1.239	0.89
173_Y	238_L	1.218	0.89
118_F	135_I	1.211	0.88
102_A	106_L	1.207	0.88
56_Q	59_P	1.203	0.88
86_Q	157_I	1.193	0.88
53_S	131_F	1.187	0.87
162_M	166_E	1.166	0.86
80_E	165_E	1.164	0.86
104_D	107_S	1.150	0.86
137_R	141_F	1.132	0.85
200_L	228_R	1.118	0.84
148_D	216_K	1.112	0.84
188_A	244_L	1.102	0.83
115_L	135_I	1.101	0.83
228_R	231_Y	1.097	0.83
39_L	43_L	1.093	0.83
87_V	139_G	1.086	0.82
180_V	242_L	1.084	0.82
101_I	105_L	1.078	0.82
111_G	248_D	1.069	0.81
50_E	165_E	1.065	0.81
90_I	93_E	1.063	0.81
212_D	223_R	1.063	0.81
196_F	247_P	1.063	0.81
145_A	226_E	1.057	0.80
229_Q	232_I	1.052	0.80
44_S	96_E	1.051	0.80
136_D	143_L	1.046	0.80
176_I	238_L	1.045	0.80
139_G	143_L	1.040	0.79
137_R	234_D	1.033	0.79
45_V	210_T	1.024	0.78
180_V	185_R	1.018	0.78
49_T	115_L	1.017	0.78
53_S	132_T	1.004	0.77
225_D	229_Q	1.001	0.77
173_Y	234_D	1.000	0.77
101_I	104_D	0.999	0.76
136_D	172_G	0.998	0.76
51_F	112_R	0.997	0.76
39_L	214_A	0.992	0.76
80_E	136_D	0.991	0.76
144_L	147_E	0.970	0.74
136_D	171_F	0.966	0.74
170_N	174_T	0.963	0.74
134_L	235_I	0.959	0.73
117_A	135_I	0.952	0.73
180_V	189_Q	0.949	0.73
56_Q	68_S	0.944	0.72
49_T	139_G	0.937	0.72
92_K	99_K	0.932	0.71
103_E	107_S	0.930	0.71
190_A	193_N	0.930	0.71
160_T	167_F	0.921	0.70
98_G	102_A	0.917	0.70
80_E	139_G	0.909	0.69
45_V	211_I	0.907	0.69
217_Y	248_D	0.904	0.69
49_T	214_A	0.894	0.68
120_I	194_K	0.888	0.68
232_I	246_L	0.887	0.67
208_S	211_I	0.887	0.67
190_A	194_K	0.880	0.67
89_Q	100_K	0.874	0.66
246_L	249_I	0.872	0.66
109_R	113_H	0.872	0.66
129_L	175_G	0.870	0.66
79_D	191_L	0.869	0.66
113_H	117_A	0.868	0.66
140_M	166_E	0.864	0.65
173_Y	177_K	0.862	0.65
76_I	171_F	0.854	0.65
140_M	144_L	0.846	0.64
175_G	178_K	0.840	0.63
85_W	156_R	0.837	0.63
93_E	153_P	0.833	0.63
231_Y	235_I	0.821	0.61
144_L	233_K	0.821	0.61
169_I	234_D	0.817	0.61
58_M	74_S	0.814	0.61
60_W	123_N	0.813	0.61
186_D	233_K	0.796	0.59
95_G	99_K	0.789	0.58
193_N	239_I	0.776	0.57
128_T	132_T	0.775	0.57
130_G	191_L	0.767	0.56
225_D	228_R	0.767	0.56
82_R	164_E	0.766	0.56
138_V	142_Q	0.765	0.56
153_P	156_R	0.764	0.56
79_D	160_T	0.759	0.55
107_S	114_K	0.749	0.54
62_I	70_R	0.748	0.54
58_M	77_M	0.746	0.54
83_H	151_F	0.745	0.54
138_V	166_E	0.745	0.54
125_W	179_L	0.740	0.54
124_M	191_L	0.739	0.53
85_W	89_Q	0.739	0.53
41_K	210_T	0.739	0.53
171_F	175_G	0.739	0.53
169_I	173_Y	0.725	0.52
75_R	78_V	0.724	0.52
141_F	230_L	0.722	0.52
139_G	171_F	0.721	0.52
188_A	243_G	0.719	0.51
136_D	219_I	0.719	0.51
54_I	135_I	0.719	0.51
128_T	157_I	0.717	0.51
115_L	118_F	0.717	0.51
192_I	237_E	0.716	0.51
183_G	196_F	0.711	0.51
140_M	234_D	0.710	0.51
120_I	127_D	0.710	0.51
94_F	217_Y	0.707	0.50
114_K	119_N	0.707	0.50
138_V	143_L	0.706	0.50
213_L	229_Q	0.693	0.49
141_F	227_M	0.693	0.49
87_V	171_F	0.692	0.49
148_D	190_A	0.692	0.49
107_S	113_H	0.685	0.48
66_K	125_W	0.681	0.48
132_T	136_D	0.681	0.48
177_K	242_L	0.677	0.47
51_F	104_D	0.676	0.47
89_Q	92_K	0.673	0.47
194_K	197_P	0.668	0.46
43_L	153_P	0.667	0.46
87_V	136_D	0.664	0.46
171_F	174_T	0.663	0.46
70_R	74_S	0.663	0.46
89_Q	192_I	0.659	0.45
64_A	71_V	0.658	0.45
122_F	128_T	0.657	0.45
224_N	229_Q	0.656	0.45
215_Y	223_R	0.655	0.45
50_E	80_E	0.649	0.44
157_I	161_M	0.646	0.44
193_N	245_E	0.646	0.44
78_V	82_R	0.643	0.44
126_E	179_L	0.643	0.44
76_I	154_L	0.639	0.43
226_E	229_Q	0.639	0.43
80_E	83_H	0.638	0.43
166_E	169_I	0.638	0.43
49_T	124_M	0.637	0.43
53_S	118_F	0.635	0.43
107_S	111_G	0.634	0.43
177_K	241_P	0.630	0.43
79_D	167_F	0.628	0.42
151_F	161_M	0.628	0.42
50_E	249_I	0.627	0.42
160_T	179_L	0.626	0.42
210_T	213_L	0.625	0.42
205_H	212_D	0.620	0.42
50_E	83_H	0.619	0.42
142_Q	165_E	0.617	0.41
200_L	204_G	0.616	0.41
40_F	43_L	0.615	0.41
66_K	171_F	0.615	0.41
179_L	188_A	0.614	0.41
77_M	81_M	0.614	0.41
82_R	167_F	0.609	0.41
239_I	246_L	0.608	0.40
125_W	151_F	0.607	0.40
132_T	172_G	0.606	0.40
192_I	239_I	0.605	0.40
116_D	132_T	0.604	0.40
117_A	239_I	0.604	0.40
57_H	125_W	0.601	0.40
238_L	242_L	0.599	0.40
216_K	248_D	0.597	0.39
140_M	169_I	0.596	0.39
66_K	71_V	0.595	0.39
54_I	142_Q	0.594	0.39
205_H	224_N	0.589	0.39
74_S	77_M	0.588	0.39
92_K	100_K	0.586	0.38
127_D	195_W	0.585	0.38
229_Q	236_K	0.582	0.38
61_L	174_T	0.578	0.38
217_Y	221_K	0.578	0.38
234_D	237_E	0.575	0.37
205_H	226_E	0.574	0.37
40_F	98_G	0.574	0.37
148_D	240_T	0.572	0.37
43_L	90_I	0.566	0.36
64_A	74_S	0.562	0.36
50_E	139_G	0.561	0.36
66_K	69_D	0.559	0.36
41_K	45_V	0.559	0.36
52_A	121_P	0.554	0.35
39_L	94_F	0.553	0.35
101_I	167_F	0.549	0.35
61_L	86_Q	0.549	0.35
193_N	248_D	0.548	0.35
83_H	165_E	0.547	0.35
102_A	109_R	0.547	0.35
54_I	138_V	0.546	0.35
155_S	227_M	0.546	0.35
70_R	77_M	0.545	0.35
70_R	131_F	0.544	0.34
54_I	58_M	0.541	0.34
144_L	148_D	0.540	0.34
75_R	160_T	0.540	0.34
42_L	221_K	0.539	0.34
82_R	160_T	0.539	0.34
127_D	191_L	0.538	0.34
109_R	200_L	0.537	0.34
229_Q	248_D	0.535	0.34
79_D	136_D	0.535	0.34
58_M	128_T	0.535	0.34
92_K	102_A	0.535	0.34
118_F	180_V	0.533	0.33
245_E	250_N	0.533	0.33
127_D	250_N	0.533	0.33
134_L	199_G	0.532	0.33
190_A	245_E	0.532	0.33
238_L	241_P	0.529	0.33
64_A	80_E	0.528	0.33
72_T	179_L	0.528	0.33
122_F	127_D	0.528	0.33
99_K	198_R	0.527	0.33
39_L	90_I	0.527	0.33
213_L	217_Y	0.526	0.33
180_V	244_L	0.525	0.33
75_R	164_E	0.523	0.33
90_I	132_T	0.523	0.33
107_S	112_R	0.521	0.32
99_K	225_D	0.521	0.32
171_F	231_Y	0.521	0.32
160_T	191_L	0.520	0.32
144_L	230_L	0.518	0.32
203_F	228_R	0.518	0.32
203_F	227_M	0.518	0.32
39_L	83_H	0.517	0.32
147_E	159_P	0.517	0.32
45_V	231_Y	0.515	0.32
57_H	77_M	0.514	0.32
157_I	160_T	0.513	0.32
68_S	160_T	0.511	0.32
43_L	47_G	0.509	0.31
57_H	81_M	0.508	0.31
50_E	66_K	0.507	0.31
240_T	245_E	0.505	0.31
42_L	55_E	0.503	0.31
149_S	158_I	0.502	0.31
159_P	166_E	0.501	0.31
49_T	84_G	0.500	0.31

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1otkA	2	0.8516	100	0.197	Contact Map
3pf7A	1	0.9844	100	0.204	Contact Map
3pvtA	1	0.9688	100	0.255	Contact Map
4mudA	2	0.8633	100	0.316	Contact Map
3ge3A	2	0.9766	98.9	0.849	Contact Map
2incA	2	0.9766	98.9	0.85	Contact Map
1mtyB	2	0.9531	98.5	0.867	Contact Map
3u52A	2	0.9648	98.3	0.874	Contact Map
1mtyD	2	0.957	98.3	0.875	Contact Map
3ez0A	2	0.8203	98.2	0.877	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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