Q97WU5 - SULSO - GREMLIN Contacts

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Q97WU5 - Ring oxydation complex/ phenylacetic acid degradation related protein

UniProt:	Q97WU5	Sequences: MQKFNSVRELSQDLKNTLIEIIVLRADFELGMVEQISPWLVNAPTVDDRLFTAKLVSDELNHGWQLVRLLEEFNVKDRVVKIEEARLGIHMLDISNMPLFNWEDVIAFVFLVDRAGLYQLRVIKDCSFEPLANLASSMIKEEESHLFFSKNVLKAYQNKNRLQAALNFWFPRALEMLYKVKSLNEVHLRDLNVSELISDKLIEDYVRSTNDEMRNFGFVEVNYDKNLHYNIVLK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	234 (203)
Sequences:	1351 (697)
Seq/√Len:	48.9

ECOLI - PAAA PAAC
SULSO - Q97WU5 Q97YL0 Q97WU6 Q97YL1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
77_D	80_V	4.977	1.00
163_Q	167_N	4.241	1.00
26_A	67_V	3.929	1.00
24_L	180_V	3.431	1.00
17_T	187_H	3.285	1.00
92_L	176_M	2.941	1.00
48_D	148_F	2.881	1.00
163_Q	219_V	2.841	1.00
111_L	166_L	2.795	1.00
33_V	60_L	2.754	1.00
107_A	162_L	2.720	1.00
34_E	37_S	2.674	1.00
97_M	172_R	2.536	1.00
159_K	217_G	2.528	1.00
188_L	194_S	2.429	1.00
103_E	165_A	2.354	1.00
159_K	163_Q	2.291	1.00
20_E	90_H	2.187	1.00
153_L	162_L	2.175	1.00
110_F	153_L	2.165	1.00
74_N	78_R	2.104	1.00
173_A	205_Y	2.086	1.00
179_K	197_I	2.058	1.00
66_L	131_L	2.054	1.00
75_V	80_V	2.003	1.00
69_L	130_P	1.947	0.99
114_R	146_L	1.930	0.99
66_L	120_L	1.886	0.99
74_N	77_D	1.885	0.99
101_N	161_R	1.778	0.99
210_N	220_E	1.733	0.99
106_I	153_L	1.681	0.98
120_L	142_E	1.663	0.98
69_L	128_F	1.659	0.98
22_I	73_F	1.601	0.98
107_A	166_L	1.544	0.97
202_I	206_V	1.506	0.96
75_V	78_R	1.499	0.96
113_D	116_G	1.496	0.96
101_N	104_D	1.472	0.96
186_V	190_D	1.468	0.96
160_N	164_A	1.465	0.96
53_A	60_L	1.462	0.96
104_D	168_F	1.423	0.95
197_I	200_K	1.417	0.95
170_F	221_V	1.401	0.95
179_K	199_D	1.371	0.94
43_A	102_W	1.370	0.94
129_E	133_N	1.370	0.94
122_V	204_D	1.362	0.94
74_N	79_V	1.360	0.94
210_N	214_R	1.355	0.94
110_F	149_S	1.345	0.93
110_F	212_E	1.345	0.93
163_Q	217_G	1.338	0.93
157_Q	160_N	1.335	0.93
163_Q	213_M	1.326	0.93
185_E	188_L	1.316	0.93
35_Q	38_P	1.314	0.93
19_I	73_F	1.306	0.92
120_L	148_F	1.299	0.92
24_L	182_S	1.296	0.92
117_L	139_I	1.290	0.92
111_L	169_W	1.283	0.92
116_G	142_E	1.258	0.91
95_S	112_V	1.258	0.91
206_V	210_N	1.249	0.90
110_F	209_T	1.244	0.90
85_A	88_G	1.238	0.90
118_Y	208_S	1.236	0.90
71_E	79_V	1.234	0.90
181_K	186_V	1.200	0.89
211_D	215_N	1.192	0.88
28_F	92_L	1.180	0.88
59_E	142_E	1.176	0.88
71_E	78_R	1.174	0.88
203_E	206_V	1.167	0.87
65_Q	134_L	1.162	0.87
32_M	108_F	1.160	0.87
75_V	79_V	1.127	0.85
107_A	153_L	1.126	0.85
92_L	112_V	1.115	0.85
18_L	188_L	1.115	0.85
157_Q	161_R	1.112	0.84
202_I	205_Y	1.101	0.84
150_K	212_E	1.076	0.82
32_M	109_V	1.066	0.82
72_E	130_P	1.056	0.81
174_L	202_I	1.036	0.80
69_L	72_E	1.033	0.80
162_L	218_F	1.032	0.80
114_R	118_Y	1.017	0.79
122_V	200_K	1.008	0.78
116_G	120_L	1.005	0.78
162_L	217_G	0.998	0.77
94_I	112_V	0.994	0.77
139_I	143_E	0.984	0.76
30_L	89_I	0.980	0.76
29_E	142_E	0.976	0.76
114_R	208_S	0.973	0.76
66_L	116_G	0.973	0.76
113_D	148_F	0.969	0.75
91_M	96_N	0.968	0.75
59_E	113_D	0.963	0.75
153_L	212_E	0.954	0.74
113_D	120_L	0.951	0.74
19_I	74_N	0.943	0.73
113_D	149_S	0.940	0.73
150_K	154_K	0.940	0.73
150_K	208_S	0.938	0.73
117_L	121_R	0.925	0.72
199_D	203_E	0.925	0.72
147_F	151_N	0.923	0.72
107_A	165_A	0.920	0.71
23_V	75_V	0.911	0.71
59_E	116_G	0.910	0.71
106_I	152_V	0.910	0.71
18_L	22_I	0.897	0.69
58_D	165_A	0.894	0.69
121_R	124_K	0.892	0.69
152_V	155_A	0.889	0.69
105_V	109_V	0.889	0.69
164_A	167_N	0.885	0.68
111_L	209_T	0.885	0.68
206_V	220_E	0.870	0.67
101_N	157_Q	0.865	0.67
199_D	202_I	0.865	0.67
28_F	116_G	0.854	0.66
137_S	144_S	0.846	0.65
74_N	80_V	0.844	0.65
97_M	168_F	0.843	0.65
92_L	95_S	0.841	0.64
125_D	190_D	0.838	0.64
164_A	168_F	0.837	0.64
35_Q	47_D	0.827	0.63
64_W	80_V	0.823	0.63
205_Y	209_T	0.822	0.63
68_R	166_L	0.816	0.62
55_L	148_F	0.814	0.62
37_S	53_A	0.807	0.61
49_R	53_A	0.803	0.61
187_H	190_D	0.796	0.60
117_L	143_E	0.796	0.60
146_L	208_S	0.795	0.60
73_F	76_K	0.792	0.60
71_E	75_V	0.792	0.60
61_N	141_E	0.789	0.59
130_P	133_N	0.789	0.59
101_N	165_A	0.787	0.59
188_L	193_V	0.785	0.59
117_L	208_S	0.777	0.58
31_G	98_P	0.773	0.58
68_R	71_E	0.770	0.58
64_W	133_N	0.766	0.57
121_R	207_R	0.760	0.57
134_L	138_M	0.754	0.56
48_D	157_Q	0.754	0.56
41_V	49_R	0.753	0.56
115_A	119_Q	0.751	0.56
97_M	104_D	0.747	0.55
200_K	203_E	0.746	0.55
160_N	207_R	0.743	0.55
174_L	178_Y	0.729	0.54
37_S	56_V	0.727	0.53
113_D	193_V	0.726	0.53
64_W	68_R	0.723	0.53
71_E	76_K	0.723	0.53
39_W	100_F	0.722	0.53
167_N	219_V	0.718	0.52
27_D	35_Q	0.717	0.52
28_F	188_L	0.717	0.52
166_L	213_M	0.711	0.52
146_L	150_K	0.708	0.51
58_D	137_S	0.703	0.51
103_E	156_Y	0.701	0.51
115_A	143_E	0.701	0.51
102_W	156_Y	0.701	0.51
99_L	104_D	0.701	0.51
179_K	200_K	0.701	0.51
118_Y	204_D	0.696	0.50
154_K	216_F	0.696	0.50
166_L	218_F	0.695	0.50
54_K	57_S	0.695	0.50
186_V	197_I	0.694	0.50
66_L	148_F	0.691	0.50
179_K	198_S	0.689	0.49
62_H	128_F	0.686	0.49
212_E	216_F	0.684	0.49
19_I	22_I	0.683	0.49
168_F	171_P	0.677	0.48
116_G	148_F	0.676	0.48
45_T	102_W	0.676	0.48
93_D	109_V	0.674	0.48
124_K	136_S	0.674	0.48
100_F	105_V	0.670	0.48
104_D	169_W	0.664	0.47
109_V	113_D	0.657	0.46
29_E	62_H	0.652	0.46
196_L	204_D	0.649	0.45
148_F	152_V	0.645	0.45
24_L	185_E	0.644	0.45
125_D	164_A	0.643	0.45
56_V	60_L	0.642	0.45
118_Y	201_L	0.640	0.44
207_R	210_N	0.640	0.44
154_K	215_N	0.638	0.44
128_F	138_M	0.636	0.44
95_S	176_M	0.636	0.44
66_L	113_D	0.635	0.44
22_I	130_P	0.627	0.43
165_A	169_W	0.626	0.43
73_F	191_L	0.623	0.43
164_A	219_V	0.623	0.43
22_I	69_L	0.622	0.43
59_E	62_H	0.620	0.43
94_I	213_M	0.620	0.43
20_E	182_S	0.617	0.42
179_K	182_S	0.616	0.42
148_F	151_N	0.615	0.42
111_L	173_A	0.613	0.42
167_N	213_M	0.611	0.42
55_L	131_L	0.609	0.41
61_N	144_S	0.608	0.41
58_D	144_S	0.606	0.41
102_W	128_F	0.605	0.41
88_G	181_K	0.605	0.41
21_I	34_E	0.601	0.41
162_L	165_A	0.599	0.40
57_S	61_N	0.595	0.40
213_M	220_E	0.594	0.40
117_L	146_L	0.593	0.40
105_V	134_L	0.588	0.39
18_L	73_F	0.588	0.39
136_S	139_I	0.587	0.39
177_L	202_I	0.584	0.39
16_N	203_E	0.584	0.39
29_E	59_E	0.582	0.39
27_D	84_E	0.578	0.38
43_A	53_A	0.577	0.38
45_T	148_F	0.576	0.38
36_I	102_W	0.576	0.38
29_E	116_G	0.575	0.38
156_Y	162_L	0.572	0.38
43_A	59_E	0.571	0.38
16_N	20_E	0.569	0.38
36_I	60_L	0.568	0.37
95_S	99_L	0.565	0.37
173_A	176_M	0.564	0.37
213_M	217_G	0.563	0.37
168_F	219_V	0.559	0.37
22_I	26_A	0.558	0.37
125_D	210_N	0.557	0.36
71_E	74_N	0.557	0.36
51_F	156_Y	0.556	0.36
33_V	112_V	0.554	0.36
104_D	165_A	0.551	0.36
198_S	203_E	0.550	0.36
125_D	214_R	0.549	0.36
212_E	215_N	0.548	0.36
54_K	141_E	0.547	0.35
137_S	165_A	0.547	0.35
22_I	131_L	0.545	0.35
36_I	56_V	0.544	0.35
119_Q	142_E	0.544	0.35
70_L	128_F	0.543	0.35
28_F	101_N	0.539	0.35
40_L	65_Q	0.539	0.35
167_N	181_K	0.536	0.34
103_E	162_L	0.535	0.34
121_R	125_D	0.534	0.34
211_D	219_V	0.534	0.34
69_L	109_V	0.533	0.34
188_L	191_L	0.533	0.34
134_L	137_S	0.533	0.34
190_D	193_V	0.531	0.34
45_T	48_D	0.531	0.34
61_N	137_S	0.530	0.34
18_L	69_L	0.530	0.34
92_L	205_Y	0.530	0.34
191_L	203_E	0.529	0.34
143_E	146_L	0.528	0.34
99_L	105_V	0.527	0.34
125_D	186_V	0.526	0.34
33_V	115_A	0.523	0.33
121_R	193_V	0.520	0.33
31_G	129_E	0.520	0.33
171_P	198_S	0.513	0.32
137_S	156_Y	0.513	0.32
118_Y	205_Y	0.512	0.32
67_V	170_F	0.512	0.32
148_F	205_Y	0.509	0.32
43_A	50_L	0.508	0.32
23_V	70_L	0.506	0.32
54_K	137_S	0.505	0.32
85_A	200_K	0.505	0.32
37_S	105_V	0.505	0.32
121_R	204_D	0.504	0.32
87_L	174_L	0.504	0.32
130_P	138_M	0.503	0.32
189_R	197_I	0.503	0.32
68_R	220_E	0.502	0.31
160_N	210_N	0.502	0.31
18_L	62_H	0.501	0.31
114_R	209_T	0.500	0.31

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1otkA	2	0.9145	100	0.181	Contact Map
3pf7A	1	0.9829	100	0.207	Contact Map
3pvtA	1	0.9872	100	0.217	Contact Map
4mudA	2	0.9359	100	0.231	Contact Map
3ge3A	2	0.9573	98.6	0.855	Contact Map
2incA	2	0.9615	98.5	0.859	Contact Map
1mtyD	2	0.9615	98.4	0.864	Contact Map
3ez0A	2	0.8846	98.3	0.867	Contact Map
1mtyB	2	0.9658	98.2	0.87	Contact Map
3u52A	2	0.9487	98	0.879	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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