Q97WU4 - SULSO - GREMLIN Contacts

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Q97WU4 - Acetyl-CoA synthetase (Acetate-CoA ligase) amino-end (AcsA-4)

UniProt:	Q97WU4	Sequences: MTAKYGRILNVTDALFSKWEDSEADKRIAIYYKDEVWSYRKVIEEINRVGNALRELGVEKENRILIIAYDTPFFISIFYSAMKIGAIPVPVNTYLKPEEYLFLLEDTGAKVLAIEPDIWPKLSPYLKGRADKLKHVIILPSISETQKITFEDHNHKAELSFYHGLVSTASTHLEAEKTSPNDMAFWLYTSGTTGHPKAAVHLHKDILVVLDTYVKNVLKISEKDRLFSASKLFFAYGLGNGSYFAFGNGASTVLMPDRVEPEGYWRPYINTSLLSSLECLLYITQCYM	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	288 (248)
Sequences:	70490 (53274)
Seq/√Len:	3382.9

ECOLI - ENTF AAS ACSA FADK LCFA PRPE CAIC ENTE MENE
BACSU - PPSE SRFAC PPSB ACSA LCFB YDAB PPSC LCFA DHBE YNGI MENE YTCI YHFT DLTA DHBF PKSN PPSD PKSJ SRFAB SRFAA PPSA
HALSA - Q9HNK0 Q9HRY8 Q9HQU8 Q9HSM3 Q9HQ43 Q9HQN8 Q9HRY4
SULSO - Q97WU4 Q97WQ9 Q97UW7 Q97UX8 Q97YK9 Q97U22 Q97VT6 Q97WQ0 Q97VU7 Q97YI1 Q97XW4 Q97UF6 Q97V27 Q97WK0 Q97X52 Q97WS5 Q980E4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
183_M	200_V	3.708	1.00
47_N	83_K	3.305	1.00
65_L	109_A	3.071	1.00
31_Y	251_S	3.023	1.00
43_I	83_K	2.955	1.00
62_N	110_K	2.673	1.00
106_D	188_Y	2.673	1.00
58_V	86_A	2.625	1.00
17_S	43_I	2.623	1.00
225_R	251_S	2.593	1.00
45_E	76_S	2.557	1.00
102_F	195_H	2.506	1.00
28_I	36_V	2.501	1.00
24_A	27_R	2.414	1.00
43_I	47_N	2.410	1.00
52_A	56_L	2.389	1.00
19_W	24_A	2.377	1.00
31_Y	36_V	2.349	1.00
81_A	86_A	2.219	1.00
31_Y	271_T	1.991	1.00
32_Y	72_P	1.971	1.00
63_R	89_V	1.969	1.00
77_I	113_A	1.952	1.00
38_S	41_K	1.934	1.00
224_D	275_S	1.885	1.00
59_E	62_N	1.883	1.00
179_S	182_D	1.876	1.00
63_R	87_I	1.852	1.00
17_S	83_K	1.798	1.00
271_T	274_L	1.788	1.00
215_K	248_N	1.784	1.00
101_L	105_E	1.779	1.00
40_R	44_E	1.779	1.00
54_R	84_I	1.778	1.00
26_K	40_R	1.733	1.00
279_C	284_T	1.724	1.00
60_K	182_D	1.715	1.00
20_E	43_I	1.683	1.00
61_E	182_D	1.673	1.00
18_K	23_E	1.662	1.00
188_Y	198_A	1.656	1.00
49_V	76_S	1.644	1.00
266_R	270_N	1.640	1.00
25_D	40_R	1.634	1.00
65_L	91_V	1.619	1.00
202_L	205_D	1.597	1.00
64_I	81_A	1.593	1.00
75_I	242_S	1.590	1.00
180_P	204_K	1.582	1.00
236_Y	278_E	1.579	1.00
267_P	271_T	1.574	1.00
82_M	184_A	1.559	1.00
37_W	76_S	1.555	1.00
69_Y	115_E	1.548	1.00
46_I	83_K	1.546	1.00
225_R	253_V	1.525	1.00
227_F	274_L	1.496	1.00
263_G	266_R	1.494	1.00
102_F	106_D	1.494	1.00
56_L	135_H	1.490	1.00
260_E	263_G	1.485	1.00
35_E	72_P	1.484	1.00
28_I	31_Y	1.482	1.00
89_V	107_T	1.481	1.00
52_A	165_L	1.458	1.00
19_W	23_E	1.451	1.00
37_W	72_P	1.439	1.00
255_M	267_P	1.422	1.00
63_R	186_W	1.422	1.00
28_I	251_S	1.421	1.00
253_V	274_L	1.411	1.00
224_D	276_S	1.409	1.00
221_S	224_D	1.409	1.00
32_Y	35_E	1.403	1.00
181_N	204_K	1.392	1.00
245_A	250_A	1.385	1.00
29_A	39_Y	1.382	1.00
79_Y	246_F	1.362	1.00
110_K	134_K	1.335	1.00
104_L	109_A	1.320	1.00
92_N	233_F	1.311	1.00
253_V	271_T	1.308	1.00
107_T	188_Y	1.276	1.00
201_H	205_D	1.276	1.00
230_S	236_Y	1.268	1.00
47_N	51_N	1.268	1.00
97_P	124_P	1.263	1.00
186_W	198_A	1.260	1.00
29_A	42_V	1.228	1.00
178_T	182_D	1.225	1.00
181_N	202_L	1.219	1.00
97_P	101_L	1.218	1.00
87_I	183_M	1.213	1.00
67_I	100_Y	1.212	1.00
106_D	195_H	1.211	1.00
65_L	104_L	1.208	1.00
50_G	83_K	1.200	1.00
45_E	48_R	1.193	1.00
31_Y	253_V	1.186	1.00
55_E	169_A	1.179	1.00
27_R	223_K	1.177	1.00
227_F	255_M	1.167	1.00
111_V	135_H	1.156	1.00
97_P	121_K	1.155	1.00
225_R	275_S	1.122	1.00
58_V	111_V	1.121	1.00
58_V	62_N	1.116	1.00
37_W	45_E	1.116	1.00
189_T	199_A	1.108	1.00
17_S	47_N	1.108	1.00
52_A	55_E	1.105	1.00
64_I	86_A	1.091	1.00
78_F	88_P	1.074	1.00
44_E	48_R	1.072	1.00
50_G	84_I	1.072	1.00
42_V	76_S	1.064	1.00
49_V	80_S	1.050	1.00
74_F	232_L	1.048	1.00
102_F	105_E	1.048	1.00
33_K	256_P	1.042	1.00
225_R	274_L	1.040	1.00
73_F	76_S	1.022	1.00
63_R	108_G	1.019	1.00
226_L	245_A	1.013	1.00
78_F	238_L	1.002	1.00
52_A	169_A	0.999	1.00
43_I	173_L	0.995	1.00
98_E	102_F	0.992	1.00
45_E	73_F	0.986	1.00
95_L	103_L	0.976	1.00
116_P	140_P	0.971	1.00
224_D	250_A	0.971	1.00
253_V	267_P	0.971	1.00
69_Y	117_D	0.965	1.00
58_V	64_I	0.964	1.00
105_E	195_H	0.963	1.00
41_K	44_E	0.952	1.00
30_I	75_I	0.948	1.00
65_L	112_L	0.942	1.00
66_I	77_I	0.935	1.00
68_A	139_L	0.933	1.00
259_V	283_I	0.933	1.00
78_F	82_M	0.930	1.00
42_V	79_Y	0.926	1.00
37_W	42_V	0.918	1.00
68_A	71_T	0.912	1.00
54_R	59_E	0.910	1.00
75_I	254_L	0.906	1.00
62_N	86_A	0.905	1.00
71_T	115_E	0.905	1.00
96_K	99_E	0.905	1.00
137_I	141_S	0.897	1.00
45_E	72_P	0.895	1.00
91_V	100_Y	0.895	1.00
49_V	113_A	0.889	1.00
66_I	88_P	0.889	1.00
116_P	138_I	0.885	1.00
239_G	278_E	0.884	1.00
65_L	89_V	0.882	1.00
51_N	54_R	0.870	1.00
280_L	283_I	0.864	1.00
36_V	251_S	0.859	1.00
72_P	76_S	0.858	1.00
49_V	77_I	0.854	1.00
209_V	239_G	0.853	1.00
41_K	45_E	0.848	1.00
229_A	283_I	0.847	1.00
210_L	247_G	0.843	1.00
245_A	252_T	0.839	1.00
56_L	111_V	0.839	1.00
16_F	20_E	0.832	1.00
114_I	136_V	0.828	1.00
183_M	202_L	0.827	1.00
54_R	173_L	0.823	1.00
53_L	113_A	0.821	1.00
98_E	101_L	0.818	1.00
115_E	118_I	0.817	1.00
13_D	178_T	0.817	1.00
229_A	280_L	0.816	1.00
121_K	124_P	0.814	1.00
81_A	88_P	0.813	1.00
46_I	80_S	0.808	1.00
68_A	74_F	0.807	1.00
88_P	238_L	0.805	1.00
16_F	43_I	0.803	1.00
211_D	247_G	0.803	1.00
227_F	267_P	0.802	1.00
31_Y	225_R	0.802	1.00
240_N	278_E	0.798	1.00
27_R	251_S	0.793	1.00
17_S	22_S	0.789	1.00
36_V	271_T	0.787	1.00
30_I	72_P	0.784	1.00
15_L	211_D	0.783	1.00
225_R	273_L	0.783	1.00
185_F	201_H	0.782	1.00
80_S	84_I	0.777	1.00
119_W	123_S	0.777	1.00
53_L	81_A	0.772	1.00
15_L	19_W	0.771	1.00
44_E	171_T	0.768	1.00
60_K	178_T	0.766	1.00
18_K	22_S	0.764	1.00
42_V	46_I	0.759	1.00
184_A	203_H	0.757	1.00
201_H	235_A	0.753	1.00
215_K	244_F	0.752	1.00
27_R	222_E	0.747	1.00
185_F	238_L	0.745	1.00
13_D	17_S	0.745	1.00
28_I	32_Y	0.744	1.00
28_I	38_S	0.744	1.00
105_E	132_K	0.743	1.00
55_E	168_T	0.743	1.00
267_P	270_N	0.743	1.00
78_F	243_Y	0.740	1.00
268_Y	274_L	0.740	1.00
226_L	276_S	0.733	1.00
209_V	214_V	0.730	1.00
48_R	52_A	0.720	1.00
51_N	174_E	0.719	1.00
49_V	52_A	0.719	1.00
24_A	249_G	0.716	1.00
30_I	252_T	0.715	1.00
51_N	170_S	0.713	1.00
24_A	222_E	0.708	1.00
282_Y	285_Q	0.702	1.00
67_I	112_L	0.702	1.00
89_V	109_A	0.701	1.00
220_I	276_S	0.701	1.00
114_I	138_I	0.698	1.00
26_K	38_S	0.698	1.00
67_I	118_I	0.695	1.00
35_E	45_E	0.694	1.00
228_S	237_G	0.692	1.00
13_D	82_M	0.690	1.00
266_R	269_I	0.688	1.00
79_Y	243_Y	0.679	1.00
65_L	107_T	0.679	1.00
185_F	206_I	0.677	1.00
268_Y	277_L	0.676	1.00
228_S	252_T	0.676	1.00
114_I	119_W	0.676	1.00
118_I	121_K	0.675	1.00
263_G	267_P	0.675	1.00
230_S	278_E	0.671	1.00
19_W	249_G	0.669	1.00
64_I	111_V	0.669	1.00
59_E	86_A	0.668	1.00
265_W	269_I	0.668	1.00
108_G	132_K	0.666	1.00
116_P	141_S	0.666	1.00
14_A	18_K	0.665	1.00
76_S	80_S	0.665	1.00
131_D	134_K	0.665	1.00
227_F	268_Y	0.662	1.00
102_F	188_Y	0.661	1.00
262_E	266_R	0.659	1.00
16_F	79_Y	0.656	1.00
51_N	171_T	0.656	1.00
191_G	197_K	0.655	1.00
211_D	215_K	0.653	1.00
15_L	207_L	0.650	1.00
22_S	25_D	0.648	1.00
14_A	17_S	0.647	1.00
231_K	234_F	0.641	1.00
178_T	203_H	0.639	1.00
184_A	206_I	0.639	1.00
251_S	271_T	0.638	1.00
193_T	197_K	0.637	1.00
101_L	130_A	0.637	1.00
51_N	55_E	0.635	1.00
229_A	279_C	0.635	1.00
255_M	264_Y	0.631	1.00
98_E	195_H	0.628	1.00
112_L	122_L	0.628	1.00
220_I	224_D	0.624	1.00
49_V	53_L	0.624	1.00
120_P	123_S	0.622	1.00
51_N	172_H	0.621	1.00
87_I	186_W	0.621	1.00
192_T	197_K	0.619	1.00
42_V	75_I	0.618	1.00
51_N	173_L	0.612	1.00
81_A	84_I	0.611	1.00
210_L	243_Y	0.604	1.00
45_E	166_V	0.604	1.00
67_I	121_K	0.603	1.00
194_G	197_K	0.603	1.00
186_W	200_V	0.602	1.00
114_I	122_L	0.602	1.00
256_P	263_G	0.602	1.00
138_I	141_S	0.602	1.00
76_S	162_Y	0.600	1.00
187_L	235_A	0.598	1.00
68_A	115_E	0.596	1.00
32_Y	256_P	0.591	1.00
51_N	169_A	0.590	1.00
111_V	137_I	0.589	1.00
82_M	88_P	0.587	1.00
236_Y	239_G	0.587	1.00
67_I	122_L	0.587	1.00
69_Y	118_I	0.586	1.00
119_W	138_I	0.585	1.00
37_W	41_K	0.584	1.00
212_T	217_V	0.582	1.00
122_L	125_Y	0.579	1.00
103_L	198_A	0.579	1.00
135_H	139_L	0.578	1.00
164_G	167_S	0.576	1.00
13_D	83_K	0.575	1.00
95_L	100_Y	0.575	1.00
48_R	171_T	0.572	1.00
50_G	80_S	0.568	1.00
66_I	74_F	0.567	1.00
43_I	46_I	0.567	1.00
214_V	239_G	0.566	1.00
54_R	176_E	0.563	1.00
60_K	176_E	0.561	1.00
182_D	203_H	0.561	1.00
130_A	133_L	0.560	1.00
106_D	198_A	0.557	1.00
78_F	242_S	0.556	1.00
48_R	170_S	0.555	1.00
46_I	50_G	0.554	1.00
46_I	49_V	0.552	1.00
89_V	103_L	0.552	1.00
255_M	263_G	0.549	1.00
166_V	169_A	0.549	1.00
278_E	281_L	0.549	1.00
82_M	203_H	0.547	1.00
190_S	197_K	0.542	1.00
77_I	81_A	0.542	1.00
89_V	188_Y	0.542	1.00
15_L	247_G	0.540	1.00
52_A	166_V	0.539	1.00
58_V	84_I	0.537	1.00
73_F	115_E	0.536	1.00
165_L	169_A	0.535	1.00
68_A	77_I	0.535	1.00
227_F	264_Y	0.532	1.00
228_S	254_L	0.532	1.00
54_R	174_E	0.530	1.00
22_S	43_I	0.530	1.00
228_S	240_N	0.530	1.00
105_E	130_A	0.528	1.00
35_E	73_F	0.528	1.00
135_H	138_I	0.526	1.00
47_N	173_L	0.525	1.00
13_D	203_H	0.525	1.00
259_V	264_Y	0.523	1.00
255_M	259_V	0.523	1.00
74_F	78_F	0.522	1.00
264_Y	277_L	0.522	1.00
279_C	283_I	0.520	1.00
45_E	49_V	0.520	1.00
91_V	104_L	0.519	1.00
220_I	244_F	0.518	1.00
48_R	166_V	0.517	1.00
114_I	118_I	0.516	1.00
210_L	244_F	0.516	1.00
64_I	113_A	0.515	1.00
225_R	228_S	0.514	1.00
57_G	86_A	0.513	1.00
189_T	197_K	0.513	1.00
78_F	185_F	0.512	1.00
59_E	110_K	0.508	1.00
28_I	225_R	0.504	1.00
56_L	134_K	0.502	1.00
264_Y	268_Y	0.502	1.00
223_K	275_S	0.500	1.00
204_K	208_V	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1pg4A	1	0.9722	100	0.175	Contact Map
3tsyA	2	0.9479	100	0.18	Contact Map
3g7sA	2	0.9167	100	0.18	Contact Map
1ry2A	1	0.9722	100	0.183	Contact Map
2d1sA	1	0.941	100	0.186	Contact Map
3ivrA	2	0.8958	100	0.189	Contact Map
1mdbA	1	0.9236	100	0.189	Contact Map
2v7bA	1	0.8785	100	0.191	Contact Map
1v25A	2	0.9306	100	0.191	Contact Map
3o83A	1	0.934	100	0.192	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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