Q97WT7 - SULSO - GREMLIN Contacts

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Q97WT7 - Uncharacterized protein

UniProt:	Q97WT7	Sequences: MYTLMSKNDRYINPLVLDNSLRSLVSPPNRILSRFVKYLKEDYTVVDLGCGPGFFTTILARIVKTVYAVDPDERAIRRLKEKVQKLSLNNVIPYVAPAQKLEFIKDKSIDFVFSNLMLCCTSDHNGAIKEIKRILKDNGLAYISVTRSFLIKDKMDVSGDEWKKILGQFKIIREGKNLMERWAVVQQIS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	189 (149)
Sequences:	14721 (10988)
Seq/√Len:	900.2

ECOLI - SMTA YJHP UBIG BIOC TAM TEHB UBIE YAFE CMOA CMOB RLMA CFA
BACSU - YCGJ YRHH YXBB MENG YBAJ YODH YRRT YDAC YQEM YXJB
HALSA - Q9HR81 Q9HND6 Q9HR63 Q9HMT2 ARSM Q9HRX3 Q9HQ85 Q9HSK6
SULSO - Q97WT7 Q97X57 Q7LXN7 Q97ZU8 Q97YX4 Q97WH3 Q97XD7 Q97WN4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
44_T	65_T	2.730	1.00
73_E	95_V	2.702	1.00
50_C	68_A	2.631	1.00
130_E	133_R	2.370	1.00
43_Y	111_F	2.286	1.00
67_Y	109_I	2.252	1.00
56_T	66_V	2.247	1.00
104_I	109_I	2.203	1.00
69_V	96_A	2.156	1.00
79_L	93_P	2.132	1.00
46_V	109_I	2.101	1.00
131_I	141_A	2.089	1.00
49_G	117_M	2.057	1.00
40_K	43_Y	2.042	1.00
65_T	92_I	2.004	1.00
112_V	131_I	1.994	1.00
132_K	171_I	1.980	1.00
67_Y	94_Y	1.953	1.00
76_I	93_P	1.947	1.00
73_E	77_R	1.934	1.00
135_L	139_G	1.839	1.00
123_D	126_G	1.811	1.00
110_D	136_K	1.801	1.00
45_V	59_L	1.784	1.00
125_N	129_K	1.773	1.00
76_I	95_V	1.765	1.00
48_L	131_I	1.738	1.00
76_I	80_K	1.732	1.00
61_R	86_L	1.679	1.00
135_L	141_A	1.619	1.00
44_T	136_K	1.609	1.00
44_T	67_Y	1.595	1.00
112_V	135_L	1.594	1.00
48_L	98_A	1.571	1.00
130_E	134_I	1.539	1.00
57_T	83_V	1.538	1.00
117_M	121_T	1.533	1.00
83_V	93_P	1.497	1.00
50_C	56_T	1.491	1.00
94_Y	104_I	1.468	1.00
78_R	81_E	1.464	1.00
71_P	97_P	1.455	1.00
96_A	102_E	1.439	1.00
67_Y	92_I	1.423	1.00
45_V	111_F	1.408	1.00
57_T	82_K	1.351	1.00
121_T	127_A	1.323	1.00
39_L	43_Y	1.323	1.00
70_D	76_I	1.319	1.00
114_S	117_M	1.310	1.00
44_T	109_I	1.302	1.00
106_D	133_R	1.281	1.00
163_K	167_G	1.243	1.00
105_K	108_S	1.235	1.00
60_A	90_N	1.226	1.00
68_A	93_P	1.199	1.00
56_T	68_A	1.196	1.00
119_C	145_V	1.183	1.00
44_T	108_S	1.181	1.00
125_N	168_Q	1.174	1.00
116_L	119_C	1.147	1.00
74_R	77_R	1.107	1.00
164_K	168_Q	1.101	1.00
77_R	80_K	1.092	1.00
57_T	86_L	1.087	1.00
97_P	100_K	1.083	1.00
49_G	114_S	1.073	1.00
72_D	75_A	1.067	1.00
30_R	34_R	1.060	1.00
101_L	134_I	1.059	1.00
98_A	121_T	1.053	1.00
118_L	121_T	1.047	1.00
127_A	131_I	1.044	1.00
67_Y	104_I	1.038	1.00
58_I	61_R	1.022	1.00
116_L	120_C	1.016	1.00
101_L	104_I	1.010	1.00
47_D	50_C	1.009	1.00
46_V	112_V	1.004	1.00
24_L	27_P	1.002	1.00
50_C	79_L	0.990	1.00
29_N	58_I	0.985	1.00
68_A	79_L	0.982	1.00
44_T	110_D	0.975	1.00
158_S	161_E	0.969	1.00
98_A	117_M	0.964	1.00
112_V	134_I	0.964	1.00
59_L	113_F	0.962	1.00
52_P	82_K	0.959	1.00
56_T	91_V	0.957	1.00
53_G	79_L	0.952	1.00
30_R	33_S	0.949	1.00
39_L	42_D	0.945	1.00
120_C	145_V	0.945	1.00
29_N	33_S	0.928	1.00
46_V	134_I	0.926	1.00
159_G	163_K	0.921	1.00
115_N	144_S	0.920	1.00
82_K	85_K	0.913	1.00
126_G	129_K	0.912	1.00
101_L	130_E	0.909	1.00
83_V	91_V	0.905	1.00
55_F	113_F	0.897	1.00
126_G	130_E	0.887	1.00
164_K	167_G	0.867	1.00
52_P	75_A	0.859	1.00
58_I	62_I	0.859	1.00
24_L	28_P	0.847	1.00
69_V	101_L	0.836	1.00
108_S	136_K	0.821	1.00
102_E	130_E	0.821	1.00
99_Q	123_D	0.819	1.00
69_V	94_Y	0.817	1.00
45_V	66_V	0.813	1.00
81_E	85_K	0.812	1.00
116_L	144_S	0.809	1.00
56_T	93_P	0.798	1.00
55_F	115_N	0.793	1.00
81_E	84_Q	0.789	1.00
116_L	146_T	0.785	1.00
82_K	86_L	0.784	1.00
111_F	140_L	0.784	1.00
57_T	88_L	0.783	1.00
77_R	81_E	0.777	1.00
70_D	75_A	0.763	1.00
80_K	93_P	0.762	1.00
33_S	62_I	0.761	1.00
167_G	171_I	0.756	1.00
131_I	135_L	0.755	1.00
128_I	166_L	0.740	1.00
48_L	112_V	0.734	1.00
32_L	35_F	0.717	1.00
43_Y	110_D	0.715	1.00
118_L	128_I	0.714	1.00
124_H	165_I	0.713	1.00
28_P	31_I	0.711	1.00
47_D	120_C	0.708	1.00
57_T	60_A	0.707	1.00
114_S	131_I	0.706	1.00
167_G	173_R	0.704	1.00
159_G	162_W	0.698	1.00
168_Q	171_I	0.696	1.00
99_Q	122_S	0.693	1.00
54_F	58_I	0.689	1.00
42_D	64_K	0.689	1.00
57_T	61_R	0.687	1.00
31_I	142_Y	0.687	1.00
100_K	126_G	0.678	1.00
61_R	88_L	0.674	1.00
45_V	113_F	0.672	1.00
80_K	84_Q	0.671	1.00
124_H	127_A	0.671	1.00
75_A	116_L	0.667	1.00
35_F	142_Y	0.664	1.00
88_L	91_V	0.661	1.00
52_P	78_R	0.660	1.00
109_I	134_I	0.655	1.00
47_D	66_V	0.653	1.00
68_A	91_V	0.651	1.00
31_I	34_R	0.650	1.00
78_R	82_K	0.634	1.00
161_E	167_G	0.629	1.00
106_D	130_E	0.628	1.00
125_N	165_I	0.627	1.00
23_S	27_P	0.623	1.00
99_Q	126_G	0.623	1.00
157_V	161_E	0.620	1.00
125_N	169_F	0.618	1.00
74_R	78_R	0.617	1.00
25_V	29_N	0.616	1.00
53_G	93_P	0.614	1.00
114_S	141_A	0.610	1.00
48_L	69_V	0.606	1.00
156_D	159_G	0.600	1.00
99_Q	127_A	0.598	1.00
160_D	163_K	0.597	1.00
28_P	55_F	0.594	1.00
119_C	146_T	0.592	1.00
28_P	32_L	0.592	1.00
161_E	164_K	0.591	1.00
80_K	83_V	0.591	1.00
50_C	76_I	0.586	1.00
80_K	92_I	0.586	1.00
83_V	87_S	0.584	1.00
166_L	170_K	0.584	1.00
114_S	121_T	0.584	1.00
129_K	133_R	0.583	1.00
166_L	171_I	0.576	1.00
83_V	86_L	0.575	1.00
160_D	167_G	0.575	1.00
73_E	80_K	0.570	1.00
114_S	143_I	0.564	1.00
22_R	26_S	0.560	1.00
118_L	143_I	0.559	1.00
111_F	139_G	0.557	1.00
50_C	93_P	0.546	1.00
36_V	40_K	0.545	1.00
25_V	28_P	0.543	1.00
56_T	60_A	0.539	1.00
102_E	134_I	0.538	1.00
47_D	68_A	0.537	1.00
151_I	154_K	0.533	1.00
63_V	66_V	0.533	1.00
160_D	164_K	0.533	1.00
118_L	124_H	0.530	1.00
107_K	137_D	0.529	1.00
118_L	127_A	0.528	1.00
55_F	59_L	0.527	1.00
35_F	39_L	0.523	1.00
157_V	162_W	0.522	1.00
167_G	172_I	0.521	1.00
155_M	158_S	0.521	1.00
166_L	173_R	0.520	1.00
39_L	111_F	0.517	1.00
54_F	82_K	0.516	1.00
66_V	91_V	0.514	1.00
49_G	121_T	0.510	1.00
104_I	134_I	0.509	1.00
32_L	59_L	0.508	1.00
156_D	161_E	0.508	1.00
26_S	29_N	0.506	1.00
129_K	132_K	0.506	1.00
135_L	171_I	0.506	1.00
96_A	101_L	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1vl5A	1	0.8571	100	0.375	Contact Map
4pneA	2	0.9788	100	0.399	Contact Map
2o57A	2	0.9735	100	0.4	Contact Map
1xxlA	1	0.8624	100	0.402	Contact Map
4htfA	2	0.9524	100	0.408	Contact Map
3sm3A	2	0.8466	100	0.412	Contact Map
3dh0A	1	0.9577	100	0.413	Contact Map
4ineA	2	0.9841	100	0.415	Contact Map
3vc1A	5	0.9841	100	0.416	Contact Map
1ve3A	2	0.9683	100	0.416	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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