Q97WT3 - SULSO - GREMLIN Contacts

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Q97WT3 - Uncharacterized protein

UniProt:	Q97WT3	Sequences: MNTLVDQIISWIIVLYGSAVPALFVIFLIGITGLREITRYETGNTFLYKLNPVTKVVLTIVVMTVAATTIWWIGAILTLVLLLSYLTLNDGVRKFGYAFFLALSTILGGTWSIAPYTPPSTLQLAFPSVKQFTVIWTFPSYFQVMGYEQQLTLEALIYGLQTTFRVAPVLLSALLFITTTTGSDIFRMFTKIKIPIAITFSVLVGIRMIPRIFELLDTSVKMQYIRGLGYSRPKIVSSLLIVYAIFEAIIPTMVYLFRGAKNLAISADTRGFRAYPSRTSLVELKFTRVDYYGTAIIAALIIIAIVANLLGFGRTIPYVGL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	321 (250)
Sequences:	3126 (2524)
Seq/√Len:	159.6

BACSU - ECFT YKOC
HALSA - Q9HPH6
SULSO - Q97WT3 Q97X61

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
286_F	291_Y	5.806	1.00
136_W	151_L	3.798	1.00
55_K	180_T	3.672	1.00
133_T	154_E	3.650	1.00
215_L	259_G	3.527	1.00
134_V	152_T	3.399	1.00
54_T	286_F	3.382	1.00
52_P	284_L	3.171	1.00
133_T	153_L	3.030	1.00
45_T	48_Y	2.991	1.00
50_L	293_G	2.991	1.00
134_V	137_T	2.813	1.00
140_S	149_Q	2.768	1.00
58_L	297_I	2.630	1.00
135_I	156_L	2.572	1.00
79_L	168_P	2.452	1.00
234_K	237_S	2.440	1.00
50_L	54_T	2.400	1.00
44_N	49_K	2.390	1.00
217_D	221_K	2.349	1.00
291_Y	295_A	2.325	1.00
55_K	179_T	2.294	1.00
85_Y	175_L	2.279	1.00
54_T	294_T	2.210	1.00
94_K	98_A	2.200	1.00
189_F	194_I	2.152	1.00
302_I	306_V	2.121	1.00
219_S	223_Q	2.108	1.00
134_V	150_Q	2.062	1.00
193_K	196_I	2.038	1.00
137_T	150_Q	1.964	1.00
288_R	292_Y	1.937	1.00
274_A	277_S	1.916	1.00
220_V	224_Y	1.892	1.00
115_P	159_G	1.724	1.00
60_I	64_T	1.715	1.00
156_L	160_L	1.696	1.00
47_L	89_N	1.678	1.00
47_L	85_Y	1.674	1.00
131_Q	154_E	1.654	1.00
208_M	263_L	1.653	1.00
286_F	294_T	1.643	1.00
115_P	151_L	1.623	1.00
194_I	198_I	1.621	1.00
292_Y	296_I	1.599	1.00
59_T	176_F	1.584	1.00
219_S	252_T	1.576	1.00
212_I	256_L	1.566	1.00
157_I	160_L	1.544	1.00
139_P	149_Q	1.486	1.00
233_P	238_S	1.485	1.00
136_W	139_P	1.466	1.00
46_F	88_L	1.427	1.00
221_K	224_Y	1.408	1.00
66_A	78_T	1.400	1.00
131_Q	134_V	1.398	1.00
236_V	243_Y	1.395	1.00
200_F	204_V	1.381	1.00
231_S	238_S	1.377	1.00
187_R	190_T	1.372	1.00
140_S	150_Q	1.370	1.00
136_W	140_S	1.365	1.00
98_A	101_L	1.359	1.00
233_P	237_S	1.339	1.00
137_T	140_S	1.337	1.00
189_F	193_K	1.318	1.00
176_F	185_I	1.317	1.00
287_T	290_D	1.313	1.00
153_L	157_I	1.296	1.00
49_K	289_V	1.293	1.00
61_V	301_I	1.285	1.00
62_V	172_S	1.282	1.00
111_W	163_T	1.276	1.00
223_Q	251_P	1.276	1.00
135_I	151_L	1.247	1.00
206_I	210_P	1.236	1.00
265_I	268_D	1.223	1.00
158_Y	162_T	1.223	1.00
164_F	168_P	1.209	1.00
200_F	272_F	1.203	1.00
75_A	168_P	1.198	1.00
105_T	109_G	1.189	1.00
43_G	46_F	1.186	1.00
216_L	220_V	1.181	1.00
72_W	76_I	1.169	1.00
96_G	171_L	1.167	1.00
50_L	289_V	1.163	1.00
289_V	292_Y	1.150	1.00
201_S	205_G	1.148	1.00
43_G	90_D	1.142	1.00
73_I	76_I	1.135	1.00
103_L	107_L	1.133	1.00
72_W	161_Q	1.132	1.00
210_P	251_P	1.126	1.00
135_I	138_F	1.125	1.00
157_I	161_Q	1.115	1.00
197_A	212_I	1.112	1.00
199_T	210_P	1.110	1.00
212_I	216_L	1.100	1.00
59_T	172_S	1.097	1.00
234_K	238_S	1.091	0.99
296_I	299_A	1.084	0.99
135_I	152_T	1.083	0.99
87_T	90_D	1.073	0.99
135_I	153_L	1.068	0.99
82_L	172_S	1.063	0.99
210_P	264_A	1.061	0.99
103_L	106_I	1.056	0.99
267_A	272_F	1.046	0.99
187_R	191_K	1.046	0.99
192_I	195_P	1.030	0.99
295_A	302_I	1.019	0.99
92_V	95_F	1.010	0.99
73_I	77_L	1.007	0.99
43_G	48_Y	1.002	0.99
100_F	103_L	1.000	0.99
233_P	244_A	0.991	0.99
65_V	300_L	0.983	0.99
65_V	301_I	0.978	0.99
38_T	41_E	0.978	0.99
135_I	154_E	0.977	0.99
71_W	74_G	0.975	0.99
46_F	289_V	0.971	0.99
205_G	258_R	0.961	0.99
110_T	114_A	0.960	0.99
288_R	291_Y	0.953	0.99
128_S	131_Q	0.953	0.99
162_T	209_I	0.947	0.99
237_S	243_Y	0.946	0.99
212_I	263_L	0.944	0.99
65_V	74_G	0.942	0.98
155_A	159_G	0.939	0.98
72_W	157_I	0.933	0.98
160_L	163_T	0.931	0.98
101_L	105_T	0.926	0.98
186_F	189_F	0.926	0.98
105_T	108_G	0.923	0.98
159_G	189_F	0.921	0.98
66_A	168_P	0.911	0.98
133_T	137_T	0.911	0.98
54_T	293_G	0.904	0.98
291_Y	294_T	0.903	0.98
66_A	172_S	0.896	0.98
154_E	158_Y	0.895	0.98
62_V	66_A	0.893	0.98
53_V	188_M	0.892	0.98
303_I	306_V	0.892	0.98
128_S	152_T	0.891	0.98
227_G	251_P	0.889	0.98
197_A	272_F	0.886	0.98
252_T	267_A	0.885	0.98
223_Q	244_A	0.885	0.98
53_V	284_L	0.885	0.98
173_A	199_T	0.875	0.98
296_I	300_L	0.871	0.97
211_R	263_L	0.870	0.97
83_L	87_T	0.870	0.97
64_T	67_A	0.861	0.97
286_F	290_D	0.854	0.97
102_A	105_T	0.846	0.97
54_T	291_Y	0.844	0.97
96_G	175_L	0.843	0.97
97_Y	101_L	0.840	0.97
207_R	263_L	0.836	0.97
259_G	262_N	0.829	0.97
104_S	167_A	0.829	0.97
65_V	69_T	0.821	0.96
94_K	101_L	0.817	0.96
215_L	218_T	0.815	0.96
218_T	262_N	0.814	0.96
220_V	248_A	0.810	0.96
197_A	274_A	0.809	0.96
287_T	291_Y	0.808	0.96
190_T	193_K	0.805	0.96
131_Q	152_T	0.802	0.96
182_G	212_I	0.801	0.96
297_I	301_I	0.801	0.96
58_L	85_Y	0.798	0.96
293_G	297_I	0.797	0.96
87_T	93_R	0.794	0.96
113_I	126_F	0.793	0.96
80_V	83_L	0.792	0.96
295_A	298_A	0.791	0.96
207_R	252_T	0.788	0.95
303_I	307_A	0.788	0.95
59_T	163_T	0.787	0.95
78_T	300_L	0.784	0.95
285_K	288_R	0.784	0.95
51_N	284_L	0.779	0.95
84_S	88_L	0.779	0.95
292_Y	302_I	0.771	0.95
138_F	149_Q	0.763	0.95
149_Q	155_A	0.755	0.94
106_I	166_V	0.755	0.94
87_T	303_I	0.754	0.94
213_F	296_I	0.750	0.94
298_A	301_I	0.747	0.94
139_P	150_Q	0.746	0.94
223_Q	247_E	0.745	0.94
47_L	50_L	0.743	0.94
78_T	168_P	0.736	0.94
58_L	293_G	0.735	0.93
102_A	113_I	0.735	0.93
69_T	74_G	0.734	0.93
237_S	244_A	0.729	0.93
189_F	196_I	0.729	0.93
302_I	305_I	0.726	0.93
138_F	150_Q	0.725	0.93
183_S	188_M	0.722	0.93
295_A	306_V	0.722	0.93
153_L	158_Y	0.720	0.93
50_L	290_D	0.720	0.93
185_I	252_T	0.719	0.93
182_G	210_P	0.716	0.93
271_G	274_A	0.714	0.92
165_R	216_L	0.710	0.92
199_T	264_A	0.705	0.92
216_L	252_T	0.702	0.92
288_R	302_I	0.698	0.92
77_L	80_V	0.697	0.92
69_T	107_L	0.694	0.91
44_N	90_D	0.692	0.91
57_V	294_T	0.691	0.91
168_P	172_S	0.690	0.91
154_E	157_I	0.688	0.91
84_S	87_T	0.684	0.91
53_V	290_D	0.682	0.91
182_G	185_I	0.681	0.91
39_R	214_E	0.681	0.91
47_L	88_L	0.677	0.90
257_F	264_A	0.676	0.90
190_T	196_I	0.672	0.90
198_I	248_A	0.672	0.90
85_Y	138_F	0.671	0.90
45_T	49_K	0.670	0.90
103_L	205_G	0.670	0.90
79_L	83_L	0.667	0.90
201_S	259_G	0.665	0.90
255_Y	268_D	0.664	0.90
87_T	288_R	0.662	0.89
177_I	272_F	0.661	0.89
77_L	303_I	0.660	0.89
69_T	304_A	0.658	0.89
41_E	92_V	0.657	0.89
184_D	280_S	0.656	0.89
94_K	97_Y	0.654	0.89
77_L	256_L	0.649	0.88
76_I	288_R	0.649	0.88
93_R	97_Y	0.648	0.88
107_L	110_T	0.648	0.88
298_A	302_I	0.648	0.88
131_Q	136_W	0.646	0.88
46_F	78_T	0.645	0.88
62_V	82_L	0.637	0.88
62_V	297_I	0.636	0.87
197_A	200_F	0.634	0.87
85_Y	307_A	0.634	0.87
175_L	180_T	0.632	0.87
253_M	257_F	0.631	0.87
229_G	257_F	0.631	0.87
114_A	159_G	0.630	0.87
114_A	162_T	0.628	0.87
74_G	308_N	0.626	0.87
80_V	87_T	0.626	0.87
218_T	259_G	0.624	0.86
208_M	211_R	0.624	0.86
86_L	96_G	0.622	0.86
84_S	96_G	0.621	0.86
138_F	160_L	0.619	0.86
39_R	265_I	0.618	0.86
172_S	175_L	0.616	0.86
188_M	272_F	0.615	0.86
186_F	190_T	0.614	0.86
250_I	258_R	0.611	0.85
259_G	267_A	0.610	0.85
225_I	269_T	0.610	0.85
63_M	181_T	0.609	0.85
132_F	136_W	0.608	0.85
190_T	204_V	0.607	0.85
79_L	164_F	0.607	0.85
258_R	263_L	0.606	0.85
184_D	187_R	0.604	0.85
93_R	303_I	0.604	0.85
246_F	249_I	0.603	0.85
57_V	95_F	0.603	0.85
70_I	75_A	0.603	0.85
204_V	263_L	0.602	0.84
51_N	188_M	0.599	0.84
79_L	172_S	0.598	0.84
46_F	288_R	0.597	0.84
291_Y	296_I	0.596	0.84
106_I	110_T	0.596	0.84
199_T	203_L	0.596	0.84
78_T	299_A	0.596	0.84
114_A	155_A	0.596	0.84
67_A	263_L	0.594	0.84
46_F	83_L	0.594	0.84
96_G	200_F	0.591	0.83
59_T	173_A	0.588	0.83
134_V	138_F	0.588	0.83
127_P	131_Q	0.587	0.83
131_Q	153_L	0.586	0.83
210_P	227_G	0.583	0.83
57_V	306_V	0.582	0.82
210_P	215_L	0.582	0.82
57_V	185_I	0.581	0.82
87_T	306_V	0.580	0.82
212_I	259_G	0.578	0.82
99_F	178_T	0.576	0.82
193_K	199_T	0.576	0.82
208_M	259_G	0.574	0.82
204_V	267_A	0.574	0.82
109_G	113_I	0.571	0.81
214_E	217_D	0.568	0.81
155_A	265_I	0.567	0.81
65_V	306_V	0.566	0.81
203_L	282_V	0.564	0.80
134_V	140_S	0.564	0.80
289_V	306_V	0.562	0.80
218_T	222_M	0.561	0.80
106_I	113_I	0.561	0.80
63_M	233_P	0.557	0.80
157_I	292_Y	0.557	0.80
254_V	257_F	0.557	0.80
205_G	267_A	0.555	0.79
181_T	184_D	0.553	0.79
271_G	281_L	0.553	0.79
300_L	304_A	0.552	0.79
56_V	196_I	0.548	0.79
116_Y	151_L	0.545	0.78
166_V	200_F	0.545	0.78
289_V	303_I	0.541	0.78
273_R	280_S	0.539	0.77
132_F	152_T	0.537	0.77
245_I	257_F	0.537	0.77
47_L	170_L	0.536	0.77
224_Y	248_A	0.536	0.77
208_M	264_A	0.536	0.77
65_V	193_K	0.535	0.77
161_Q	165_R	0.534	0.77
136_W	153_L	0.531	0.76
266_S	279_T	0.531	0.76
284_L	290_D	0.530	0.76
68_T	305_I	0.529	0.76
228_L	269_T	0.529	0.76
231_S	236_V	0.527	0.76
207_R	211_R	0.526	0.76
91_G	178_T	0.526	0.76
238_S	244_A	0.523	0.75
267_A	270_R	0.523	0.75
211_R	259_G	0.522	0.75
200_F	255_Y	0.521	0.75
90_D	288_R	0.521	0.75
136_W	149_Q	0.519	0.75
293_G	296_I	0.518	0.75
66_A	81_L	0.518	0.75
223_Q	248_A	0.518	0.75
84_S	157_I	0.517	0.74
278_R	290_D	0.516	0.74
161_Q	256_L	0.513	0.74
55_K	226_R	0.513	0.74
160_L	288_R	0.513	0.74
187_R	224_Y	0.513	0.74
137_T	285_K	0.513	0.74
49_K	296_I	0.511	0.74
182_G	206_I	0.510	0.73
84_S	288_R	0.506	0.73
76_I	80_V	0.505	0.73
105_T	115_P	0.505	0.73
103_L	114_A	0.504	0.73
41_E	91_G	0.504	0.73
162_T	271_G	0.503	0.72
82_L	171_L	0.502	0.72
76_I	236_V	0.501	0.72
46_F	296_I	0.500	0.72

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4huqT	1	0.7383	100	0.348	Contact Map
1rh5C	1	0.0997	15.1	0.961	Contact Map
2l0eA	1	0.0966	10.9	0.964	Contact Map
2mc7A	1	0.0935	4.3	0.97	Contact Map
3hd7A	1	0.2523	3.1	0.972	Contact Map
1lbjA	1	0.0654	2.6	0.973	Contact Map
3p0bA	1	0.1776	2.3	0.974	Contact Map
3dinD	1	0.1433	2.2	0.974	Contact Map
3dl8C	1	0.0872	2.1	0.974	Contact Map
2b5dX	3	0.1869	2	0.975	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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