Q97WR0 - SULSO - GREMLIN Contacts

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Q97WR0 - Uncharacterized protein

UniProt:	Q97WR0	Sequences: MINLIKHVDIVVSHEDCWTSHMPFTAYTINLEVYPHKNYLRSRILIDSMENKVISNLMKTHRSVIKVMKVDRFKGGTYVDFLNKYKGSIAGVLYDKEVLILGNLIEGKDEKWSFVTSSKNLREILTEIESLGKVKRVETTDFNPILYPNLTEWEKKVLTVSYSYGYLDYPRRATADELAKLLGISKVTFLYHLRNAQRKLIAFSIKNILA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	210 (197)
Sequences:	1888 (1506)
Seq/√Len:	107.3

HALSA - O54637 Q9HR58 Q9HSM9 Q9HSR5 Q9HQD9 Q9HPS7 DMSR Q9HQU9
SULSO - Q97WR0 Q97YT8 Q97YL7 Q97Y14 Q97X87 Q97UD7 Q7LXI8 Q97ZB6 Q97UC0 Q97ZX5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
173_A	178_L	4.254	1.00
167_L	197_Q	4.103	1.00
160_V	164_Y	3.804	1.00
93_L	98_V	3.387	1.00
157_V	182_L	3.206	1.00
185_S	188_T	3.006	1.00
164_Y	178_L	3.003	1.00
188_T	192_H	2.965	1.00
162_Y	202_A	2.858	1.00
164_Y	181_L	2.856	1.00
168_D	172_R	2.762	1.00
160_V	178_L	2.698	1.00
98_V	116_T	2.686	1.00
173_A	177_E	2.672	1.00
153_W	192_H	2.656	1.00
174_T	177_E	2.569	1.00
175_A	189_F	2.231	1.00
55_S	79_V	2.144	1.00
169_Y	190_L	2.041	1.00
29_I	32_E	1.987	1.00
11_V	109_D	1.977	1.00
153_W	156_K	1.968	1.00
184_I	189_F	1.959	1.00
44_I	81_F	1.925	1.00
153_W	157_V	1.891	1.00
158_L	201_I	1.889	1.00
175_A	190_L	1.876	1.00
23_P	108_K	1.831	1.00
155_K	159_T	1.824	1.00
117_S	120_N	1.768	1.00
186_K	190_L	1.656	1.00
69_K	79_V	1.638	1.00
29_I	34_Y	1.636	1.00
101_L	115_V	1.597	1.00
178_L	189_F	1.591	1.00
68_M	173_A	1.587	1.00
192_H	195_N	1.553	1.00
201_I	204_S	1.536	1.00
64_V	67_V	1.528	1.00
171_R	194_R	1.512	1.00
147_Y	204_S	1.481	1.00
157_V	192_H	1.451	1.00
175_A	192_H	1.441	1.00
31_L	34_Y	1.418	1.00
192_H	199_K	1.403	1.00
180_K	183_G	1.390	1.00
10_I	114_F	1.385	1.00
162_Y	205_I	1.362	1.00
11_V	137_V	1.357	1.00
30_N	34_Y	1.356	1.00
11_V	135_K	1.343	1.00
66_K	69_K	1.342	1.00
173_A	181_L	1.326	0.99
51_N	77_T	1.296	0.99
191_Y	195_N	1.291	0.99
169_Y	191_Y	1.288	0.99
188_T	191_Y	1.268	0.99
165_G	172_R	1.267	0.99
25_T	28_T	1.228	0.99
77_T	80_D	1.220	0.99
157_V	189_F	1.217	0.99
42_S	83_N	1.217	0.99
177_E	180_K	1.214	0.99
157_V	178_L	1.214	0.99
22_M	61_H	1.197	0.99
158_L	167_L	1.185	0.99
30_N	33_V	1.170	0.99
123_E	126_T	1.145	0.98
164_Y	173_A	1.135	0.98
150_L	196_A	1.134	0.98
185_S	194_R	1.134	0.98
65_I	84_K	1.128	0.98
179_A	189_F	1.128	0.98
167_L	193_L	1.121	0.98
166_Y	175_A	1.119	0.98
17_C	20_S	1.099	0.98
162_Y	167_L	1.096	0.98
157_V	184_I	1.092	0.98
166_Y	171_R	1.091	0.98
54_I	142_F	1.090	0.98
51_N	54_I	1.086	0.98
61_H	64_V	1.074	0.98
187_V	191_Y	1.060	0.97
51_N	55_S	1.054	0.97
153_W	191_Y	1.051	0.97
175_A	186_K	1.036	0.97
115_V	167_L	1.030	0.97
126_T	130_S	1.023	0.97
169_Y	187_V	1.022	0.97
50_E	53_V	1.021	0.97
96_K	127_E	1.020	0.97
176_D	186_K	1.016	0.97
157_V	196_A	1.013	0.97
8_V	11_V	1.010	0.96
45_L	76_G	1.005	0.96
10_I	125_L	0.995	0.96
63_S	101_L	0.991	0.96
100_I	114_F	0.987	0.96
46_I	54_I	0.984	0.96
167_L	175_A	0.983	0.96
198_R	202_A	0.978	0.96
201_I	205_I	0.974	0.96
17_C	23_P	0.959	0.95
90_A	189_F	0.956	0.95
169_Y	192_H	0.953	0.95
200_L	204_S	0.951	0.95
188_T	193_L	0.950	0.95
46_I	77_T	0.945	0.95
69_K	77_T	0.945	0.95
193_L	197_Q	0.944	0.95
178_L	182_L	0.940	0.95
169_Y	194_R	0.936	0.95
182_L	189_F	0.929	0.94
70_V	78_Y	0.916	0.94
20_S	23_P	0.916	0.94
63_S	151_T	0.906	0.94
111_K	137_V	0.902	0.94
29_I	33_V	0.893	0.93
125_L	134_V	0.890	0.93
169_Y	198_R	0.888	0.93
91_G	95_D	0.880	0.93
175_A	188_T	0.878	0.93
97_E	117_S	0.874	0.92
139_T	166_Y	0.872	0.92
98_V	102_G	0.871	0.92
186_K	195_N	0.864	0.92
53_V	56_N	0.852	0.91
8_V	121_L	0.852	0.91
158_L	205_I	0.851	0.91
156_K	159_T	0.847	0.91
188_T	196_A	0.846	0.91
149_N	203_F	0.840	0.91
18_W	22_M	0.839	0.91
120_N	123_E	0.837	0.91
100_I	123_E	0.831	0.90
58_M	196_A	0.831	0.90
31_L	35_P	0.831	0.90
135_K	143_N	0.823	0.90
103_N	167_L	0.819	0.90
159_T	163_S	0.819	0.90
47_D	76_G	0.819	0.90
65_I	68_M	0.818	0.90
84_K	136_R	0.817	0.90
195_N	198_R	0.812	0.89
116_T	135_K	0.811	0.89
129_E	184_I	0.803	0.89
94_Y	178_L	0.802	0.89
200_L	203_F	0.797	0.88
21_H	89_I	0.791	0.88
105_I	110_E	0.789	0.88
160_V	181_L	0.786	0.88
102_G	167_L	0.786	0.88
28_T	46_I	0.785	0.88
195_N	200_L	0.783	0.88
55_S	67_V	0.783	0.88
33_V	167_L	0.783	0.88
122_R	125_L	0.780	0.87
176_D	194_R	0.774	0.87
55_S	58_M	0.769	0.87
10_I	112_W	0.768	0.87
154_E	199_K	0.765	0.86
196_A	201_I	0.760	0.86
88_S	91_G	0.756	0.86
153_W	197_Q	0.742	0.85
23_P	105_I	0.734	0.84
107_G	145_I	0.722	0.83
168_D	198_R	0.720	0.83
50_E	107_G	0.718	0.83
101_L	113_S	0.714	0.82
70_V	105_I	0.710	0.82
169_Y	176_D	0.710	0.82
156_K	160_V	0.709	0.82
83_N	90_A	0.708	0.82
155_K	204_S	0.708	0.82
18_W	21_H	0.707	0.82
26_A	48_S	0.706	0.82
64_V	69_K	0.699	0.81
123_E	172_R	0.698	0.81
160_V	182_L	0.698	0.81
164_Y	189_F	0.693	0.80
92_V	95_D	0.686	0.80
82_L	186_K	0.683	0.79
52_K	55_S	0.681	0.79
14_H	17_C	0.679	0.79
159_T	205_I	0.677	0.79
67_V	70_V	0.677	0.79
52_K	180_K	0.671	0.78
46_I	150_L	0.668	0.78
53_V	57_L	0.664	0.78
10_I	136_R	0.664	0.78
12_V	76_G	0.661	0.77
58_M	195_N	0.648	0.76
99_L	115_V	0.648	0.76
148_P	204_S	0.647	0.76
124_I	191_Y	0.642	0.75
14_H	110_E	0.638	0.75
188_T	195_N	0.637	0.75
41_R	109_D	0.637	0.75
121_L	156_K	0.633	0.74
27_Y	97_E	0.629	0.74
52_K	56_N	0.628	0.74
76_G	200_L	0.627	0.73
98_V	103_N	0.626	0.73
167_L	196_A	0.625	0.73
66_K	131_L	0.624	0.73
24_F	108_K	0.624	0.73
13_S	20_S	0.621	0.73
16_D	184_I	0.620	0.73
78_Y	86_K	0.618	0.72
21_H	24_F	0.618	0.72
160_V	173_A	0.617	0.72
90_A	93_L	0.617	0.72
38_N	180_K	0.615	0.72
75_G	131_L	0.615	0.72
15_E	21_H	0.611	0.71
154_E	192_H	0.609	0.71
76_G	152_E	0.604	0.71
166_Y	193_L	0.604	0.71
87_G	179_A	0.602	0.70
90_A	196_A	0.600	0.70
80_D	184_I	0.599	0.70
39_Y	65_I	0.598	0.70
9_D	18_W	0.598	0.70
12_V	17_C	0.595	0.69
122_R	188_T	0.594	0.69
34_Y	112_W	0.593	0.69
165_G	168_D	0.593	0.69
29_I	35_P	0.592	0.69
182_L	190_L	0.592	0.69
188_T	204_S	0.592	0.69
97_E	127_E	0.591	0.69
175_A	196_A	0.591	0.69
184_I	187_V	0.590	0.69
110_E	188_T	0.587	0.68
135_K	198_R	0.587	0.68
156_K	189_F	0.586	0.68
100_I	147_Y	0.583	0.68
174_T	204_S	0.577	0.67
142_F	195_N	0.577	0.67
14_H	18_W	0.576	0.67
144_P	168_D	0.574	0.67
53_V	180_K	0.572	0.66
38_N	60_T	0.572	0.66
170_P	194_R	0.566	0.66
101_L	174_T	0.564	0.65
43_R	83_N	0.563	0.65
26_A	179_A	0.563	0.65
12_V	26_A	0.561	0.65
129_E	132_G	0.560	0.65
8_V	118_S	0.560	0.65
86_K	126_T	0.559	0.65
14_H	20_S	0.559	0.65
133_K	163_S	0.557	0.64
93_L	114_F	0.554	0.64
42_S	81_F	0.553	0.64
68_M	80_D	0.551	0.64
92_V	127_E	0.551	0.64
137_V	198_R	0.550	0.63
136_R	139_T	0.549	0.63
149_N	202_A	0.547	0.63
71_D	76_G	0.544	0.63
121_L	139_T	0.544	0.63
10_I	108_K	0.543	0.62
127_E	131_L	0.542	0.62
118_S	185_S	0.540	0.62
43_R	157_V	0.539	0.62
103_N	189_F	0.539	0.62
114_F	124_I	0.537	0.62
128_I	132_G	0.536	0.61
165_G	190_L	0.534	0.61
25_T	124_I	0.533	0.61
173_A	189_F	0.533	0.61
15_E	20_S	0.531	0.61
153_W	171_R	0.526	0.60
49_M	117_S	0.525	0.60
46_I	57_L	0.523	0.60
98_V	101_L	0.521	0.59
45_L	101_L	0.517	0.59
102_G	182_L	0.516	0.59
61_H	130_S	0.516	0.59
158_L	197_Q	0.514	0.58
40_L	191_Y	0.513	0.58
162_Y	201_I	0.513	0.58
13_S	199_K	0.509	0.58
155_K	203_F	0.508	0.57
55_S	59_K	0.508	0.57
114_F	117_S	0.506	0.57
47_D	53_V	0.505	0.57
118_S	139_T	0.505	0.57
111_K	179_A	0.504	0.57
30_N	45_L	0.504	0.57
51_N	144_P	0.503	0.57
74_K	124_I	0.501	0.56
110_E	113_S	0.501	0.56
75_G	80_D	0.500	0.56
37_K	52_K	0.500	0.56

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4wszA	2	0.2762	97.7	0.837	Contact Map
1je8A	2	0.281	97.7	0.837	Contact Map
1s7oA	3	0.3429	97.6	0.84	Contact Map
3c57A	2	0.2429	97.5	0.841	Contact Map
1ku3A	1	0.2857	97.5	0.842	Contact Map
1fseA	2	0.2857	97.5	0.842	Contact Map
2o8xA	7	0.2905	97.3	0.847	Contact Map
1xsvA	2	0.3381	97.3	0.847	Contact Map
4g6dA	1	0.2952	97.3	0.848	Contact Map
1x3uA	1	0.3286	97.2	0.85	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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