Q97WQ5 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97WQ5 - Uncharacterized protein

UniProt:	Q97WQ5	Sequences: MVTPLKEEELSKHYIISYKPNAKYAYTAGQAQSKYLLGLKEGKIYGRKCNKCGRIHVPPKMYCEECFRPTDEWVEVKDEGIVMTAVASFISWTRAKLEEPEIVGVIRLLPSNDRDFVYPGIFHRICASYEQVKSMEIIGKRVKAVWRPKEERKGSIEDIQCFKVI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	165 (140)
Sequences:	488 (284)
Seq/√Len:	24.0

HALSA - Q9HRI9
SULSO - Q97WQ5 Q97WQ4 Q97UW9 Q7LXW3 Q97VJ8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
143_K	163_K	4.992	1.00
49_C	52_C	4.317	1.00
49_C	63_C	4.217	1.00
52_C	63_C	3.976	1.00
52_C	66_C	3.854	1.00
44_I	57_V	3.454	1.00
82_V	104_G	3.143	1.00
42_G	152_R	2.996	1.00
43_K	75_E	2.752	0.99
78_D	144_A	2.716	0.99
38_G	45_Y	2.666	0.99
28_A	36_L	2.354	0.98
79_E	143_K	2.212	0.97
63_C	66_C	2.205	0.97
106_I	144_A	2.110	0.96
49_C	66_C	2.083	0.95
125_I	132_V	2.073	0.95
108_L	162_F	2.038	0.95
145_V	161_C	2.035	0.95
83_M	107_R	1.992	0.94
140_K	164_V	1.935	0.93
82_V	142_V	1.903	0.93
80_G	142_V	1.843	0.91
34_K	73_W	1.641	0.86
46_G	57_V	1.630	0.85
154_G	158_D	1.539	0.82
108_L	112_N	1.536	0.81
145_V	163_K	1.507	0.80
128_S	131_Q	1.501	0.80
45_Y	75_E	1.492	0.80
34_K	37_L	1.486	0.79
152_R	158_D	1.475	0.79
33_S	37_L	1.356	0.73
77_K	108_L	1.344	0.72
94_R	126_C	1.327	0.71
41_E	133_K	1.282	0.68
34_K	143_K	1.280	0.68
124_R	127_A	1.212	0.64
47_R	73_W	1.160	0.60
15_I	23_K	1.155	0.60
99_E	126_C	1.134	0.58
104_G	142_V	1.126	0.58
126_C	161_C	1.117	0.57
46_G	112_N	1.113	0.57
34_K	38_G	1.084	0.55
48_K	141_R	1.060	0.53
60_K	87_A	1.059	0.53
120_G	124_R	1.058	0.53
44_I	108_L	1.056	0.53
76_V	108_L	1.043	0.52
52_C	68_R	1.029	0.51
110_P	141_R	0.994	0.49
38_G	43_K	0.990	0.48
63_C	103_V	0.981	0.48
108_L	144_A	0.981	0.48
45_Y	73_W	0.977	0.47
59_P	73_W	0.976	0.47
42_G	147_R	0.975	0.47
28_A	33_S	0.972	0.47
30_Q	72_E	0.962	0.46
37_L	143_K	0.942	0.45
36_L	155_S	0.937	0.45
47_R	68_R	0.932	0.44
46_G	74_V	0.925	0.44
106_I	132_V	0.922	0.44
145_V	160_Q	0.911	0.43
129_Y	164_V	0.906	0.42
26_Y	101_E	0.903	0.42
42_G	59_P	0.901	0.42
35_Y	73_W	0.895	0.42
68_R	71_D	0.890	0.41
92_W	99_E	0.887	0.41
147_R	151_E	0.887	0.41
57_V	76_V	0.886	0.41
55_I	110_P	0.881	0.41
42_G	151_E	0.879	0.41
92_W	101_E	0.879	0.41
67_F	144_A	0.874	0.40
18_Y	122_F	0.861	0.39
29_G	96_K	0.851	0.39
12_K	54_R	0.837	0.38
47_R	63_C	0.836	0.38
132_V	140_K	0.836	0.38
48_K	99_E	0.836	0.38
123_H	162_F	0.835	0.38
37_L	41_E	0.833	0.37
108_L	119_P	0.832	0.37
47_R	70_T	0.831	0.37
69_P	125_I	0.830	0.37
147_R	152_R	0.829	0.37
140_K	150_E	0.813	0.36
61_M	70_T	0.812	0.36
32_Q	146_W	0.802	0.35
53_G	68_R	0.801	0.35
24_Y	68_R	0.800	0.35
61_M	104_G	0.797	0.35
13_H	145_V	0.783	0.34
38_G	161_C	0.781	0.34
33_S	39_L	0.777	0.34
64_E	88_S	0.777	0.34
32_Q	36_L	0.769	0.33
20_P	27_T	0.761	0.33
29_G	158_D	0.757	0.33
71_D	156_I	0.752	0.32
89_F	145_V	0.746	0.32
79_E	144_A	0.737	0.31
48_K	74_V	0.722	0.30
63_C	68_R	0.722	0.30
95_A	141_R	0.718	0.30
83_M	140_K	0.718	0.30
106_I	125_I	0.717	0.30
48_K	53_G	0.716	0.30
120_G	123_H	0.715	0.30
65_E	87_A	0.709	0.30
127_A	131_Q	0.706	0.29
80_G	111_S	0.696	0.29
45_Y	153_K	0.696	0.29
13_H	38_G	0.694	0.29
41_E	152_R	0.694	0.29
14_Y	17_S	0.689	0.28
121_I	147_R	0.689	0.28
74_V	111_S	0.688	0.28
147_R	158_D	0.686	0.28
106_I	123_H	0.681	0.28
35_Y	103_V	0.678	0.28
59_P	88_S	0.676	0.28
84_T	129_Y	0.674	0.28
32_Q	56_H	0.673	0.28
55_I	74_V	0.672	0.27
81_I	141_R	0.666	0.27
42_G	131_Q	0.665	0.27
36_L	47_R	0.662	0.27
99_E	161_C	0.660	0.27
87_A	102_I	0.660	0.27
123_H	127_A	0.658	0.27
126_C	130_E	0.657	0.27
81_I	108_L	0.653	0.26
35_Y	38_G	0.652	0.26
45_Y	88_S	0.651	0.26
36_L	93_T	0.650	0.26
35_Y	156_I	0.647	0.26
44_I	76_V	0.647	0.26
38_G	77_K	0.638	0.26
31_A	61_M	0.634	0.25
67_F	147_R	0.633	0.25
31_A	77_K	0.629	0.25
28_A	121_I	0.626	0.25
31_A	93_T	0.623	0.25
91_S	95_A	0.620	0.25
35_Y	90_I	0.619	0.25
156_I	159_I	0.613	0.24
70_T	147_R	0.610	0.24
12_K	75_E	0.606	0.24
86_V	103_V	0.602	0.24
85_A	102_I	0.597	0.23
58_P	154_G	0.595	0.23
55_I	112_N	0.593	0.23
16_I	22_A	0.592	0.23
55_I	111_S	0.592	0.23
44_I	106_I	0.587	0.23
92_W	95_A	0.586	0.23
133_K	140_K	0.585	0.23
59_P	62_Y	0.583	0.23
38_G	41_E	0.579	0.23
32_Q	122_F	0.577	0.22
79_E	83_M	0.576	0.22
38_G	146_W	0.574	0.22
96_K	101_E	0.574	0.22
22_A	60_K	0.574	0.22
69_P	131_Q	0.574	0.22
58_P	159_I	0.572	0.22
22_A	101_E	0.567	0.22
49_C	60_K	0.567	0.22
26_Y	32_Q	0.565	0.22
19_K	133_K	0.562	0.22
55_I	141_R	0.561	0.22
119_P	123_H	0.559	0.22
101_E	124_R	0.558	0.22
43_K	161_C	0.553	0.21
78_D	132_V	0.550	0.21
14_Y	21_N	0.547	0.21
153_K	161_C	0.547	0.21
38_G	88_S	0.547	0.21
92_W	103_V	0.546	0.21
52_C	138_I	0.543	0.21
24_Y	42_G	0.542	0.21
28_A	133_K	0.539	0.21
154_G	157_E	0.539	0.21
41_E	128_S	0.538	0.21
82_V	132_V	0.537	0.21
72_E	131_Q	0.536	0.20
72_E	130_E	0.536	0.20
129_Y	132_V	0.535	0.20
106_I	162_F	0.532	0.20
102_I	127_A	0.529	0.20
47_R	56_H	0.527	0.20
123_H	144_A	0.527	0.20
28_A	32_Q	0.527	0.20
91_S	100_P	0.526	0.20
79_E	107_R	0.524	0.20
80_G	107_R	0.520	0.20
84_T	92_W	0.520	0.20
43_K	155_S	0.512	0.19
98_E	125_I	0.511	0.19
43_K	51_K	0.510	0.19
81_I	110_P	0.507	0.19
55_I	87_A	0.506	0.19
45_Y	81_I	0.504	0.19
31_A	71_D	0.500	0.19
88_S	140_K	0.500	0.19

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3irbA	3	0.8182	100	0.463	Contact Map
1lkoA	3	0.4848	88.4	0.907	Contact Map
3pwfA	4	0.3636	86.2	0.91	Contact Map
1s24A	1	0.2182	79.5	0.916	Contact Map
1yuzA	2	0.3636	77	0.918	Contact Map
2lcqA	1	0.4606	76.5	0.919	Contact Map
4d02A	2	0.103	72.6	0.921	Contact Map
1yk4A	1	0.2	68.4	0.923	Contact Map
2v3bB	1	0.2061	65.1	0.925	Contact Map
2kn9A	1	0.3636	61.9	0.927	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0067 seconds.