GREMLIN Database
Q97WQ1 - Indolepyruvate ferredoxin oxidoreductase beta subunit (IorB)
UniProt: Q97WQ1 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 194 (167)
Sequences: 3433 (2298)
Seq/√Len: 177.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
161_N179_K3.7871.00
131_Q135_K3.6611.00
30_S159_L3.1751.00
86_A91_T3.1721.00
179_K183_A3.0091.00
128_D131_Q2.8771.00
92_T123_K2.8551.00
172_E176_K2.6381.00
161_N175_I2.6291.00
152_S182_Q2.2711.00
132_I184_I2.2521.00
87_S90_H2.2111.00
135_K180_I2.2091.00
29_Y162_E2.2081.00
69_D87_S2.2051.00
141_A173_S2.1181.00
27_G55_I2.1081.00
73_G79_V2.1011.00
180_I183_A2.0841.00
70_Y150_L2.0471.00
151_Y182_Q2.0391.00
5_N54_R1.9891.00
132_I180_I1.8271.00
72_V150_L1.7331.00
87_S91_T1.7241.00
176_K180_I1.6871.00
166_I170_K1.6751.00
4_V70_Y1.6731.00
24_A36_I1.6401.00
136_A141_A1.5721.00
176_K179_K1.5701.00
96_N130_N1.5661.00
168_A172_E1.5551.00
32_T55_I1.5401.00
132_I135_K1.5351.00
149_F185_K1.5331.00
175_I179_K1.5281.00
97_N128_D1.5181.00
145_A177_A1.5141.00
151_Y160_I1.5121.00
86_A93_I1.5021.00
151_Y178_F1.5001.00
129_A146_M1.4991.00
95_V126_V1.4761.00
97_N126_V1.4761.00
71_L93_I1.4751.00
132_I145_A1.4461.00
7_L85_Y1.4191.00
158_G161_N1.4091.00
173_S176_K1.4071.00
134_I139_I1.3601.00
98_Y128_D1.3071.00
154_G157_E1.3031.00
98_Y131_Q1.2891.00
172_E175_I1.2861.00
63_I68_A1.2521.00
125_Y153_L1.2461.00
10_G16_I1.2251.00
76_A99_V1.2181.00
94_V153_L1.2091.00
128_D184_I1.1951.00
11_V75_E1.1891.00
8_I72_V1.1761.00
152_S185_K1.1691.00
127_I149_F1.1681.00
22_I144_A1.1631.00
58_V61_P1.1311.00
7_L52_H1.1291.00
8_I16_I1.1221.00
133_A145_A1.1121.00
180_I184_I1.1101.00
125_Y149_F1.0891.00
6_I23_I1.0881.00
158_G162_E1.0751.00
75_E78_E1.0541.00
136_A145_A1.0511.00
177_A181_A1.0501.00
8_I53_V1.0461.00
171_Y175_I1.0200.99
166_I171_Y1.0090.99
152_S186_I1.0050.99
164_S167_K1.0000.99
168_A171_Y0.9950.99
8_I23_I0.9940.99
69_D90_H0.9880.99
163_E166_I0.9860.99
18_T166_I0.9850.99
136_A180_I0.9820.99
167_K171_Y0.9710.99
148_G181_A0.9690.99
73_G95_V0.9670.99
119_L122_C0.9660.99
19_A74_L0.9630.99
138_N141_A0.9590.99
92_T125_Y0.9570.99
145_A181_A0.9470.99
29_Y164_S0.9120.99
178_F182_Q0.8950.99
169_L172_E0.8900.98
131_Q134_I0.8880.98
129_A142_A0.8660.98
165_F172_E0.8570.98
20_G51_V0.8560.98
19_A147_L0.8510.98
150_L154_G0.8480.98
12_G41_G0.8430.98
26_A159_L0.8410.98
68_A71_L0.8300.98
163_E175_I0.8270.98
14_Q45_R0.8100.97
74_L142_A0.8080.97
30_S157_E0.8080.97
95_V124_V0.8060.97
32_T57_D0.8040.97
76_A80_L0.8010.97
89_K121_G0.8010.97
127_I132_I0.7910.97
74_L146_M0.7860.97
94_V129_A0.7830.97
83_L93_I0.7820.97
170_K173_S0.7800.97
130_N142_A0.7790.96
80_L102_P0.7780.96
71_L86_A0.7760.96
6_I70_Y0.7740.96
7_L63_I0.7710.96
136_A173_S0.7660.96
145_A180_I0.7650.96
28_N34_V0.7570.96
159_L162_E0.7550.96
70_Y92_T0.7550.96
119_L124_V0.7540.96
151_Y156_F0.7540.96
44_Q47_G0.7490.96
16_I74_L0.7480.96
163_E167_K0.7470.96
141_A177_A0.7460.96
90_H121_G0.7410.95
48_G82_N0.7380.95
167_K170_K0.7380.95
149_F153_L0.7350.95
148_G177_A0.7300.95
52_H63_I0.7290.95
7_L68_A0.7290.95
48_G78_E0.7290.95
38_E43_A0.7220.95
33_K58_V0.7130.94
68_A85_Y0.7090.94
50_N82_N0.7080.94
162_E165_F0.6940.93
21_K36_I0.6930.93
39_T50_N0.6920.93
149_F184_I0.6910.93
43_A46_G0.6900.93
26_A30_S0.6890.93
138_N173_S0.6870.93
26_A157_E0.6860.93
118_K121_G0.6750.92
39_T62_L0.6750.92
163_E172_E0.6690.92
41_G44_Q0.6690.92
17_I42_L0.6650.92
17_I49_V0.6620.92
96_N142_A0.6580.92
64_P67_K0.6580.92
145_A149_F0.6510.91
151_Y155_A0.6490.91
48_G77_I0.6420.91
163_E171_Y0.6400.90
20_G36_I0.6390.90
144_A178_F0.6320.90
98_Y130_N0.6290.90
67_K87_S0.6280.90
38_E44_Q0.6250.89
96_N128_D0.6250.89
7_L50_N0.6250.89
5_N68_A0.6190.89
25_E28_N0.6180.89
75_E81_R0.6170.89
12_G49_V0.6170.89
39_T42_L0.6140.88
35_L54_R0.6130.88
169_L173_S0.6120.88
25_E29_Y0.6060.88
130_N134_I0.6050.88
5_N67_K0.6050.88
29_Y159_L0.6010.87
92_T131_Q0.6000.87
22_I92_T0.5980.87
129_A148_G0.5950.87
40_H46_G0.5940.87
133_A142_A0.5940.87
84_N89_K0.5890.86
32_T154_G0.5880.86
38_E49_V0.5860.86
38_E42_L0.5840.86
125_Y185_K0.5810.86
35_L58_V0.5810.86
38_E51_V0.5790.85
9_A73_G0.5770.85
17_I38_E0.5690.84
129_A133_A0.5650.84
141_A144_A0.5640.84
4_V55_I0.5640.84
19_A72_V0.5630.84
21_K24_A0.5630.84
76_A102_P0.5620.84
118_K122_C0.5590.83
72_V146_M0.5570.83
160_I178_F0.5550.83
9_A78_E0.5520.83
36_I51_V0.5490.82
11_V44_Q0.5490.82
93_I122_C0.5460.82
103_V126_V0.5460.82
9_A82_N0.5420.81
27_G32_T0.5400.81
129_A149_F0.5390.81
133_A141_A0.5330.80
36_I52_H0.5330.80
17_I60_S0.5330.80
54_R58_V0.5320.80
123_K153_L0.5250.79
152_S155_A0.5240.79
48_G75_E0.5240.79
83_L119_L0.5240.79
11_V78_E0.5230.79
52_H85_Y0.5220.79
99_V128_D0.5210.79
26_A160_I0.5180.79
12_G43_A0.5170.78
18_T22_I0.5170.78
100_V103_V0.5160.78
35_L61_P0.5160.78
79_V104_L0.5150.78
8_I74_L0.5140.78
71_L82_N0.5130.78
10_G13_G0.5120.78
142_A146_M0.5110.78
164_S168_A0.5110.78
79_V93_I0.5110.78
96_N129_A0.5110.78
76_A97_N0.5100.77
18_T62_L0.5070.77
44_Q49_V0.5070.77
71_L91_T0.5060.77
33_K56_G0.5050.77
37_A62_L0.5040.77
132_I136_A0.5030.76
52_H64_P0.5000.76
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3g2eA 4 0.9175 100 0.221 Contact Map
3on3A 2 0.8711 100 0.245 Contact Map
2raaA 1 0.8814 100 0.26 Contact Map
2c42A 2 0.9845 100 0.323 Contact Map
5c4iB 1 0.9175 100 0.38 Contact Map
2eklA 2 0.8247 76.4 0.912 Contact Map
3gvxA 2 0.8247 75.4 0.913 Contact Map
2zydA 2 0.8814 68.6 0.917 Contact Map
4gwgA 2 0.9124 66.7 0.918 Contact Map
4xybA 2 0.8608 65.8 0.918 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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