Q97WQ1 - SULSO - GREMLIN Contacts

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Q97WQ1 - Indolepyruvate ferredoxin oxidoreductase beta subunit (IorB)

UniProt:	Q97WQ1	Sequences: MAWVNILIAGVGGQGIITAGKIIAEAGNYSNTKVLIAETHGLAQRGGGVNVHVRIGDVNSPLIPLGKADYLVGLEAIEVLRNLNYASRKHTTIVVNNYVVRPVLPKVKLLTLQEIFDKLKGCKVYVIDANQIAIKAGNIKAANAAMLGFLYSLGAFEGLINEESFIKALKYESNIKAFKIAQAIKINGIDINGI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	194 (167)
Sequences:	3433 (2298)
Seq/√Len:	177.8

HALSA - Q9HRZ5 Q9HQJ9
SULSO - Q97WQ1 Q97YU7 Q97V76 Q97V21 Q7LX70

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
161_N	179_K	3.787	1.00
131_Q	135_K	3.661	1.00
30_S	159_L	3.175	1.00
86_A	91_T	3.172	1.00
179_K	183_A	3.009	1.00
128_D	131_Q	2.877	1.00
92_T	123_K	2.855	1.00
172_E	176_K	2.638	1.00
161_N	175_I	2.629	1.00
152_S	182_Q	2.271	1.00
132_I	184_I	2.252	1.00
87_S	90_H	2.211	1.00
135_K	180_I	2.209	1.00
29_Y	162_E	2.208	1.00
69_D	87_S	2.205	1.00
141_A	173_S	2.118	1.00
27_G	55_I	2.108	1.00
73_G	79_V	2.101	1.00
180_I	183_A	2.084	1.00
70_Y	150_L	2.047	1.00
151_Y	182_Q	2.039	1.00
5_N	54_R	1.989	1.00
132_I	180_I	1.827	1.00
72_V	150_L	1.733	1.00
87_S	91_T	1.724	1.00
176_K	180_I	1.687	1.00
166_I	170_K	1.675	1.00
4_V	70_Y	1.673	1.00
24_A	36_I	1.640	1.00
136_A	141_A	1.572	1.00
176_K	179_K	1.570	1.00
96_N	130_N	1.566	1.00
168_A	172_E	1.555	1.00
32_T	55_I	1.540	1.00
132_I	135_K	1.535	1.00
149_F	185_K	1.533	1.00
175_I	179_K	1.528	1.00
97_N	128_D	1.518	1.00
145_A	177_A	1.514	1.00
151_Y	160_I	1.512	1.00
86_A	93_I	1.502	1.00
151_Y	178_F	1.500	1.00
129_A	146_M	1.499	1.00
95_V	126_V	1.476	1.00
97_N	126_V	1.476	1.00
71_L	93_I	1.475	1.00
132_I	145_A	1.446	1.00
7_L	85_Y	1.419	1.00
158_G	161_N	1.409	1.00
173_S	176_K	1.407	1.00
134_I	139_I	1.360	1.00
98_Y	128_D	1.307	1.00
154_G	157_E	1.303	1.00
98_Y	131_Q	1.289	1.00
172_E	175_I	1.286	1.00
63_I	68_A	1.252	1.00
125_Y	153_L	1.246	1.00
10_G	16_I	1.225	1.00
76_A	99_V	1.218	1.00
94_V	153_L	1.209	1.00
128_D	184_I	1.195	1.00
11_V	75_E	1.189	1.00
8_I	72_V	1.176	1.00
152_S	185_K	1.169	1.00
127_I	149_F	1.168	1.00
22_I	144_A	1.163	1.00
58_V	61_P	1.131	1.00
7_L	52_H	1.129	1.00
8_I	16_I	1.122	1.00
133_A	145_A	1.112	1.00
180_I	184_I	1.110	1.00
125_Y	149_F	1.089	1.00
6_I	23_I	1.088	1.00
158_G	162_E	1.075	1.00
75_E	78_E	1.054	1.00
136_A	145_A	1.051	1.00
177_A	181_A	1.050	1.00
8_I	53_V	1.046	1.00
171_Y	175_I	1.020	0.99
166_I	171_Y	1.009	0.99
152_S	186_I	1.005	0.99
164_S	167_K	1.000	0.99
168_A	171_Y	0.995	0.99
8_I	23_I	0.994	0.99
69_D	90_H	0.988	0.99
163_E	166_I	0.986	0.99
18_T	166_I	0.985	0.99
136_A	180_I	0.982	0.99
167_K	171_Y	0.971	0.99
148_G	181_A	0.969	0.99
73_G	95_V	0.967	0.99
119_L	122_C	0.966	0.99
19_A	74_L	0.963	0.99
138_N	141_A	0.959	0.99
92_T	125_Y	0.957	0.99
145_A	181_A	0.947	0.99
29_Y	164_S	0.912	0.99
178_F	182_Q	0.895	0.99
169_L	172_E	0.890	0.98
131_Q	134_I	0.888	0.98
129_A	142_A	0.866	0.98
165_F	172_E	0.857	0.98
20_G	51_V	0.856	0.98
19_A	147_L	0.851	0.98
150_L	154_G	0.848	0.98
12_G	41_G	0.843	0.98
26_A	159_L	0.841	0.98
68_A	71_L	0.830	0.98
163_E	175_I	0.827	0.98
14_Q	45_R	0.810	0.97
74_L	142_A	0.808	0.97
30_S	157_E	0.808	0.97
95_V	124_V	0.806	0.97
32_T	57_D	0.804	0.97
76_A	80_L	0.801	0.97
89_K	121_G	0.801	0.97
127_I	132_I	0.791	0.97
74_L	146_M	0.786	0.97
94_V	129_A	0.783	0.97
83_L	93_I	0.782	0.97
170_K	173_S	0.780	0.97
130_N	142_A	0.779	0.96
80_L	102_P	0.778	0.96
71_L	86_A	0.776	0.96
6_I	70_Y	0.774	0.96
7_L	63_I	0.771	0.96
136_A	173_S	0.766	0.96
145_A	180_I	0.765	0.96
28_N	34_V	0.757	0.96
159_L	162_E	0.755	0.96
70_Y	92_T	0.755	0.96
119_L	124_V	0.754	0.96
151_Y	156_F	0.754	0.96
44_Q	47_G	0.749	0.96
16_I	74_L	0.748	0.96
163_E	167_K	0.747	0.96
141_A	177_A	0.746	0.96
90_H	121_G	0.741	0.95
48_G	82_N	0.738	0.95
167_K	170_K	0.738	0.95
149_F	153_L	0.735	0.95
148_G	177_A	0.730	0.95
52_H	63_I	0.729	0.95
7_L	68_A	0.729	0.95
48_G	78_E	0.729	0.95
38_E	43_A	0.722	0.95
33_K	58_V	0.713	0.94
68_A	85_Y	0.709	0.94
50_N	82_N	0.708	0.94
162_E	165_F	0.694	0.93
21_K	36_I	0.693	0.93
39_T	50_N	0.692	0.93
149_F	184_I	0.691	0.93
43_A	46_G	0.690	0.93
26_A	30_S	0.689	0.93
138_N	173_S	0.687	0.93
26_A	157_E	0.686	0.93
118_K	121_G	0.675	0.92
39_T	62_L	0.675	0.92
163_E	172_E	0.669	0.92
41_G	44_Q	0.669	0.92
17_I	42_L	0.665	0.92
17_I	49_V	0.662	0.92
96_N	142_A	0.658	0.92
64_P	67_K	0.658	0.92
145_A	149_F	0.651	0.91
151_Y	155_A	0.649	0.91
48_G	77_I	0.642	0.91
163_E	171_Y	0.640	0.90
20_G	36_I	0.639	0.90
144_A	178_F	0.632	0.90
98_Y	130_N	0.629	0.90
67_K	87_S	0.628	0.90
38_E	44_Q	0.625	0.89
96_N	128_D	0.625	0.89
7_L	50_N	0.625	0.89
5_N	68_A	0.619	0.89
25_E	28_N	0.618	0.89
75_E	81_R	0.617	0.89
12_G	49_V	0.617	0.89
39_T	42_L	0.614	0.88
35_L	54_R	0.613	0.88
169_L	173_S	0.612	0.88
25_E	29_Y	0.606	0.88
130_N	134_I	0.605	0.88
5_N	67_K	0.605	0.88
29_Y	159_L	0.601	0.87
92_T	131_Q	0.600	0.87
22_I	92_T	0.598	0.87
129_A	148_G	0.595	0.87
40_H	46_G	0.594	0.87
133_A	142_A	0.594	0.87
84_N	89_K	0.589	0.86
32_T	154_G	0.588	0.86
38_E	49_V	0.586	0.86
38_E	42_L	0.584	0.86
125_Y	185_K	0.581	0.86
35_L	58_V	0.581	0.86
38_E	51_V	0.579	0.85
9_A	73_G	0.577	0.85
17_I	38_E	0.569	0.84
129_A	133_A	0.565	0.84
141_A	144_A	0.564	0.84
4_V	55_I	0.564	0.84
19_A	72_V	0.563	0.84
21_K	24_A	0.563	0.84
76_A	102_P	0.562	0.84
118_K	122_C	0.559	0.83
72_V	146_M	0.557	0.83
160_I	178_F	0.555	0.83
9_A	78_E	0.552	0.83
36_I	51_V	0.549	0.82
11_V	44_Q	0.549	0.82
93_I	122_C	0.546	0.82
103_V	126_V	0.546	0.82
9_A	82_N	0.542	0.81
27_G	32_T	0.540	0.81
129_A	149_F	0.539	0.81
133_A	141_A	0.533	0.80
36_I	52_H	0.533	0.80
17_I	60_S	0.533	0.80
54_R	58_V	0.532	0.80
123_K	153_L	0.525	0.79
152_S	155_A	0.524	0.79
48_G	75_E	0.524	0.79
83_L	119_L	0.524	0.79
11_V	78_E	0.523	0.79
52_H	85_Y	0.522	0.79
99_V	128_D	0.521	0.79
26_A	160_I	0.518	0.79
12_G	43_A	0.517	0.78
18_T	22_I	0.517	0.78
100_V	103_V	0.516	0.78
35_L	61_P	0.516	0.78
79_V	104_L	0.515	0.78
8_I	74_L	0.514	0.78
71_L	82_N	0.513	0.78
10_G	13_G	0.512	0.78
142_A	146_M	0.511	0.78
164_S	168_A	0.511	0.78
79_V	93_I	0.511	0.78
96_N	129_A	0.511	0.78
76_A	97_N	0.510	0.77
18_T	62_L	0.507	0.77
44_Q	49_V	0.507	0.77
71_L	91_T	0.506	0.77
33_K	56_G	0.505	0.77
37_A	62_L	0.504	0.77
132_I	136_A	0.503	0.76
52_H	64_P	0.500	0.76

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3g2eA	4	0.9175	100	0.221	Contact Map
3on3A	2	0.8711	100	0.245	Contact Map
2raaA	1	0.8814	100	0.26	Contact Map
2c42A	2	0.9845	100	0.323	Contact Map
5c4iB	1	0.9175	100	0.38	Contact Map
2eklA	2	0.8247	76.4	0.912	Contact Map
3gvxA	2	0.8247	75.4	0.913	Contact Map
2zydA	2	0.8814	68.6	0.917	Contact Map
4gwgA	2	0.9124	66.7	0.918	Contact Map
4xybA	2	0.8608	65.8	0.918	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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