Q97WP9 - SULSO - GREMLIN Contacts

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Q97WP9 - Peroxiredoxin, bacterioferritin comigratory protein homolog (Bcp-1)

UniProt:	Q97WP9	Sequences: MVKVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGCTREACAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKEEEIS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	153 (140)
Sequences:	13517 (8723)
Seq/√Len:	737.2

ECOLI - AHPC BCP TPX DSBE
BACSU - BCP TPX AHPC YKUU YKUV RESA STOA YNEN
HALSA - Q9HQE6 Q9HP28 Q9HN00 Q9HRG4
SULSO - Q97WP9 Q97VL0 Q97WG5 TDXH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
31_N	119_K	3.595	1.00
12_E	20_K	2.977	1.00
53_R	87_P	2.957	1.00
40_D	77_H	2.710	1.00
15_A	19_E	2.568	1.00
8_A	102_Y	2.517	1.00
12_E	22_S	2.480	1.00
14_I	20_K	2.439	1.00
7_K	122_I	2.346	1.00
118_D	124_R	2.336	1.00
29_K	65_V	2.317	1.00
56_W	60_K	2.180	1.00
10_L	24_S	2.032	1.00
16_D	81_K	2.027	1.00
118_D	122_I	2.007	1.00
55_N	58_L	1.997	1.00
10_L	22_S	1.895	1.00
22_S	25_D	1.872	1.00
56_W	87_P	1.793	1.00
15_A	21_I	1.751	1.00
49_A	86_L	1.706	1.00
21_I	26_Y	1.701	1.00
97_K	101_L	1.671	1.00
13_G	91_V	1.670	1.00
71_S	96_K	1.648	1.00
13_G	98_I	1.536	1.00
71_S	99_R	1.498	1.00
125_H	143_A	1.490	1.00
15_A	89_I	1.475	1.00
33_V	116_V	1.441	1.00
78_K	82_E	1.371	1.00
117_I	123_I	1.369	1.00
64_V	144_L	1.367	1.00
26_Y	67_I	1.365	1.00
55_N	137_V	1.349	1.00
32_I	65_V	1.336	1.00
60_K	65_V	1.334	1.00
41_D	84_Y	1.322	1.00
41_D	79_R	1.302	1.00
31_N	124_R	1.287	1.00
27_I	32_I	1.286	1.00
138_N	142_K	1.254	1.00
26_Y	32_I	1.249	1.00
53_R	88_F	1.220	1.00
4_V	125_H	1.203	1.00
57_D	60_K	1.180	1.00
32_I	121_G	1.162	1.00
36_F	69_V	1.161	1.00
31_N	64_V	1.154	1.00
99_R	110_P	1.141	1.00
127_Y	143_A	1.130	1.00
96_K	100_E	1.125	1.00
53_R	57_D	1.121	1.00
68_G	90_L	1.108	1.00
24_S	27_I	1.092	1.00
35_Y	49_A	1.090	1.00
50_C	54_D	1.087	1.00
51_A	55_N	1.082	1.00
55_N	138_N	1.072	1.00
65_V	89_I	1.070	1.00
32_I	67_I	1.059	1.00
98_I	102_Y	1.055	1.00
71_S	110_P	1.052	1.00
139_E	142_K	1.052	1.00
51_A	54_D	1.048	1.00
33_V	114_T	1.047	1.00
100_E	108_I	1.046	1.00
27_I	121_G	1.034	1.00
15_A	91_V	1.019	1.00
104_A	113_I	1.016	1.00
47_R	134_A	1.007	1.00
75_N	79_R	0.998	1.00
14_I	74_I	0.994	1.00
33_V	64_V	0.988	1.00
46_T	84_Y	0.988	1.00
35_Y	48_E	0.982	1.00
11_F	98_I	0.982	1.00
50_C	53_R	0.975	1.00
23_L	32_I	0.958	1.00
32_I	117_I	0.958	1.00
58_L	61_D	0.947	1.00
79_R	82_E	0.942	1.00
52_F	66_V	0.941	1.00
135_N	138_N	0.935	1.00
113_I	128_N	0.932	1.00
31_N	116_V	0.931	1.00
8_A	117_I	0.930	1.00
116_V	143_A	0.925	1.00
8_A	123_I	0.924	1.00
17_N	78_K	0.917	1.00
58_L	141_L	0.909	1.00
41_D	83_K	0.906	1.00
74_I	92_S	0.903	1.00
31_N	63_D	0.881	1.00
73_D	76_S	0.856	1.00
35_Y	88_F	0.856	1.00
11_F	102_Y	0.853	1.00
80_F	84_Y	0.851	1.00
97_K	100_E	0.850	1.00
63_D	119_K	0.847	1.00
33_V	52_F	0.846	1.00
7_K	27_I	0.843	1.00
10_L	23_L	0.842	1.00
48_E	114_T	0.835	1.00
41_D	76_S	0.833	1.00
116_V	125_H	0.830	1.00
34_L	117_I	0.829	1.00
132_N	135_N	0.826	1.00
68_G	88_F	0.826	1.00
77_H	80_F	0.821	1.00
104_A	115_F	0.816	1.00
78_K	81_K	0.807	1.00
74_I	78_K	0.805	1.00
16_D	78_K	0.803	1.00
42_T	112_R	0.801	1.00
4_V	126_I	0.797	1.00
57_D	87_P	0.789	1.00
67_I	91_V	0.784	1.00
38_P	42_T	0.784	1.00
23_L	26_Y	0.782	1.00
113_I	126_I	0.780	1.00
115_F	123_I	0.779	1.00
62_Y	144_L	0.779	1.00
111_A	130_Q	0.779	1.00
75_N	78_K	0.769	1.00
57_D	61_D	0.765	1.00
53_R	56_W	0.764	1.00
36_F	102_Y	0.757	1.00
47_R	50_C	0.752	1.00
115_F	126_I	0.750	1.00
135_N	139_E	0.747	1.00
116_V	127_Y	0.743	1.00
93_D	96_K	0.742	1.00
96_K	99_R	0.742	1.00
21_I	67_I	0.740	1.00
56_W	65_V	0.738	1.00
39_K	72_D	0.737	1.00
81_K	90_L	0.728	1.00
111_A	128_N	0.721	1.00
124_R	130_Q	0.716	1.00
35_Y	114_T	0.714	1.00
37_Y	40_D	0.700	1.00
11_F	23_L	0.698	1.00
14_I	94_P	0.687	1.00
72_D	76_S	0.677	1.00
6_D	126_I	0.675	1.00
36_F	98_I	0.673	1.00
8_A	23_L	0.672	1.00
50_C	84_Y	0.668	1.00
69_V	98_I	0.665	1.00
125_H	139_E	0.662	1.00
117_I	121_G	0.653	1.00
79_R	83_K	0.647	1.00
17_N	81_K	0.643	1.00
76_S	79_R	0.643	1.00
28_G	119_K	0.640	1.00
31_N	144_L	0.640	1.00
55_N	59_L	0.629	1.00
8_A	98_I	0.624	1.00
34_L	102_Y	0.623	1.00
72_D	77_H	0.621	1.00
127_Y	140_A	0.620	1.00
98_I	101_L	0.618	1.00
136_H	139_E	0.616	1.00
52_F	140_A	0.613	1.00
100_E	105_K	0.612	1.00
114_T	140_A	0.611	1.00
49_A	68_G	0.610	1.00
21_I	25_D	0.604	1.00
4_V	123_I	0.601	1.00
48_E	52_F	0.601	1.00
9_P	101_L	0.595	1.00
16_D	74_I	0.591	1.00
81_K	85_K	0.591	1.00
37_Y	80_F	0.588	1.00
43_P	46_T	0.588	1.00
46_T	80_F	0.588	1.00
37_Y	68_G	0.584	1.00
24_S	121_G	0.583	1.00
25_D	28_G	0.581	1.00
62_Y	141_L	0.580	1.00
26_Y	65_V	0.578	1.00
58_L	62_Y	0.572	1.00
59_L	141_L	0.571	1.00
16_D	89_I	0.567	1.00
70_S	77_H	0.566	1.00
33_V	140_A	0.562	1.00
38_P	112_R	0.559	1.00
67_I	89_I	0.559	1.00
35_Y	44_G	0.553	1.00
49_A	88_F	0.552	1.00
40_D	76_S	0.549	1.00
104_A	111_A	0.549	1.00
106_G	109_L	0.541	1.00
35_Y	52_F	0.537	1.00
96_K	108_I	0.535	1.00
21_I	91_V	0.533	1.00
73_D	94_P	0.528	1.00
99_R	104_A	0.526	1.00
77_H	92_S	0.520	1.00
33_V	144_L	0.517	1.00
60_K	63_D	0.513	1.00
10_L	27_I	0.512	1.00
51_A	137_V	0.509	1.00
130_Q	134_A	0.507	1.00
139_E	143_A	0.504	1.00
59_L	64_V	0.503	1.00
60_K	87_P	0.502	1.00
14_I	18_G	0.502	1.00
39_K	109_L	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2v2gA	2	0.9935	100	0.222	Contact Map
1prxA	2	0.9935	100	0.235	Contact Map
3w6gA	6	0.9804	100	0.241	Contact Map
3a2vA	5	0.9869	100	0.242	Contact Map
1xccA	2	0.9935	100	0.244	Contact Map
1xvwA	3	0.9739	100	0.254	Contact Map
1xiyA	1	0.9412	100	0.266	Contact Map
2c0dA	2	0.9804	100	0.271	Contact Map
3tjjA	3	0.9935	100	0.275	Contact Map
2i81A	3	0.9739	100	0.278	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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