GREMLIN Database
Q97WP9 - Peroxiredoxin, bacterioferritin comigratory protein homolog (Bcp-1)
UniProt: Q97WP9 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 153 (140)
Sequences: 13517 (8723)
Seq/√Len: 737.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
31_N119_K3.5951.00
12_E20_K2.9771.00
53_R87_P2.9571.00
40_D77_H2.7101.00
15_A19_E2.5681.00
8_A102_Y2.5171.00
12_E22_S2.4801.00
14_I20_K2.4391.00
7_K122_I2.3461.00
118_D124_R2.3361.00
29_K65_V2.3171.00
56_W60_K2.1801.00
10_L24_S2.0321.00
16_D81_K2.0271.00
118_D122_I2.0071.00
55_N58_L1.9971.00
10_L22_S1.8951.00
22_S25_D1.8721.00
56_W87_P1.7931.00
15_A21_I1.7511.00
49_A86_L1.7061.00
21_I26_Y1.7011.00
97_K101_L1.6711.00
13_G91_V1.6701.00
71_S96_K1.6481.00
13_G98_I1.5361.00
71_S99_R1.4981.00
125_H143_A1.4901.00
15_A89_I1.4751.00
33_V116_V1.4411.00
78_K82_E1.3711.00
117_I123_I1.3691.00
64_V144_L1.3671.00
26_Y67_I1.3651.00
55_N137_V1.3491.00
32_I65_V1.3361.00
60_K65_V1.3341.00
41_D84_Y1.3221.00
41_D79_R1.3021.00
31_N124_R1.2871.00
27_I32_I1.2861.00
138_N142_K1.2541.00
26_Y32_I1.2491.00
53_R88_F1.2201.00
4_V125_H1.2031.00
57_D60_K1.1801.00
32_I121_G1.1621.00
36_F69_V1.1611.00
31_N64_V1.1541.00
99_R110_P1.1411.00
127_Y143_A1.1301.00
96_K100_E1.1251.00
53_R57_D1.1211.00
68_G90_L1.1081.00
24_S27_I1.0921.00
35_Y49_A1.0901.00
50_C54_D1.0871.00
51_A55_N1.0821.00
55_N138_N1.0721.00
65_V89_I1.0701.00
32_I67_I1.0591.00
98_I102_Y1.0551.00
71_S110_P1.0521.00
139_E142_K1.0521.00
51_A54_D1.0481.00
33_V114_T1.0471.00
100_E108_I1.0461.00
27_I121_G1.0341.00
15_A91_V1.0191.00
104_A113_I1.0161.00
47_R134_A1.0071.00
75_N79_R0.9981.00
14_I74_I0.9941.00
33_V64_V0.9881.00
46_T84_Y0.9881.00
35_Y48_E0.9821.00
11_F98_I0.9821.00
50_C53_R0.9751.00
23_L32_I0.9581.00
32_I117_I0.9581.00
58_L61_D0.9471.00
79_R82_E0.9421.00
52_F66_V0.9411.00
135_N138_N0.9351.00
113_I128_N0.9321.00
31_N116_V0.9311.00
8_A117_I0.9301.00
116_V143_A0.9251.00
8_A123_I0.9241.00
17_N78_K0.9171.00
58_L141_L0.9091.00
41_D83_K0.9061.00
74_I92_S0.9031.00
31_N63_D0.8811.00
73_D76_S0.8561.00
35_Y88_F0.8561.00
11_F102_Y0.8531.00
80_F84_Y0.8511.00
97_K100_E0.8501.00
63_D119_K0.8471.00
33_V52_F0.8461.00
7_K27_I0.8431.00
10_L23_L0.8421.00
48_E114_T0.8351.00
41_D76_S0.8331.00
116_V125_H0.8301.00
34_L117_I0.8291.00
132_N135_N0.8261.00
68_G88_F0.8261.00
77_H80_F0.8211.00
104_A115_F0.8161.00
78_K81_K0.8071.00
74_I78_K0.8051.00
16_D78_K0.8031.00
42_T112_R0.8011.00
4_V126_I0.7971.00
57_D87_P0.7891.00
67_I91_V0.7841.00
38_P42_T0.7841.00
23_L26_Y0.7821.00
113_I126_I0.7801.00
115_F123_I0.7791.00
62_Y144_L0.7791.00
111_A130_Q0.7791.00
75_N78_K0.7691.00
57_D61_D0.7651.00
53_R56_W0.7641.00
36_F102_Y0.7571.00
47_R50_C0.7521.00
115_F126_I0.7501.00
135_N139_E0.7471.00
116_V127_Y0.7431.00
93_D96_K0.7421.00
96_K99_R0.7421.00
21_I67_I0.7401.00
56_W65_V0.7381.00
39_K72_D0.7371.00
81_K90_L0.7281.00
111_A128_N0.7211.00
124_R130_Q0.7161.00
35_Y114_T0.7141.00
37_Y40_D0.7001.00
11_F23_L0.6981.00
14_I94_P0.6871.00
72_D76_S0.6771.00
6_D126_I0.6751.00
36_F98_I0.6731.00
8_A23_L0.6721.00
50_C84_Y0.6681.00
69_V98_I0.6651.00
125_H139_E0.6621.00
117_I121_G0.6531.00
79_R83_K0.6471.00
17_N81_K0.6431.00
76_S79_R0.6431.00
28_G119_K0.6401.00
31_N144_L0.6401.00
55_N59_L0.6291.00
8_A98_I0.6241.00
34_L102_Y0.6231.00
72_D77_H0.6211.00
127_Y140_A0.6201.00
98_I101_L0.6181.00
136_H139_E0.6161.00
52_F140_A0.6131.00
100_E105_K0.6121.00
114_T140_A0.6111.00
49_A68_G0.6101.00
21_I25_D0.6041.00
4_V123_I0.6011.00
48_E52_F0.6011.00
9_P101_L0.5951.00
16_D74_I0.5911.00
81_K85_K0.5911.00
37_Y80_F0.5881.00
43_P46_T0.5881.00
46_T80_F0.5881.00
37_Y68_G0.5841.00
24_S121_G0.5831.00
25_D28_G0.5811.00
62_Y141_L0.5801.00
26_Y65_V0.5781.00
58_L62_Y0.5721.00
59_L141_L0.5711.00
16_D89_I0.5671.00
70_S77_H0.5661.00
33_V140_A0.5621.00
38_P112_R0.5591.00
67_I89_I0.5591.00
35_Y44_G0.5531.00
49_A88_F0.5521.00
40_D76_S0.5491.00
104_A111_A0.5491.00
106_G109_L0.5411.00
35_Y52_F0.5371.00
96_K108_I0.5351.00
21_I91_V0.5331.00
73_D94_P0.5281.00
99_R104_A0.5261.00
77_H92_S0.5201.00
33_V144_L0.5171.00
60_K63_D0.5131.00
10_L27_I0.5121.00
51_A137_V0.5091.00
130_Q134_A0.5071.00
139_E143_A0.5041.00
59_L64_V0.5031.00
60_K87_P0.5021.00
14_I18_G0.5021.00
39_K109_L0.5000.99
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2v2gA 2 0.9935 100 0.222 Contact Map
1prxA 2 0.9935 100 0.235 Contact Map
3w6gA 6 0.9804 100 0.241 Contact Map
3a2vA 5 0.9869 100 0.242 Contact Map
1xccA 2 0.9935 100 0.244 Contact Map
1xvwA 3 0.9739 100 0.254 Contact Map
1xiyA 1 0.9412 100 0.266 Contact Map
2c0dA 2 0.9804 100 0.271 Contact Map
3tjjA 3 0.9935 100 0.275 Contact Map
2i81A 3 0.9739 100 0.278 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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