Q97WP2 - SULSO - GREMLIN Contacts

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Q97WP2 - Uncharacterized protein

UniProt:	Q97WP2	Sequences: MSQNSLAYFYISSIKLTNRWWSSSREERRSAINEIESVESQFRNNLISLKRYISLRNDSDIIYWVTSSDTSKLLEFKYTLLSKIRDLGYESLSLFSVYRSSPYTRGNFDINKVLSLEPLRYFVAYPMKKDVEWYLLPFEEREKIMKEHIETARTHPKNKGIRSYTTYSFGVGDYEFVVVYEIPEIENWVEVVEALREVKARKWITKEEPILVGELRGLDLFLI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	223 (208)
Sequences:	773 (439)
Seq/√Len:	30.4

BACSU - YWFI
HALSA - Y2021
SULSO - Q97WP2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
119_L	183_P	5.340	1.00
9_F	166_T	4.074	1.00
157_K	187_N	3.674	1.00
143_K	199_K	3.129	1.00
151_T	198_V	3.069	1.00
146_K	150_E	3.030	1.00
69_D	72_K	2.968	1.00
61_I	88_G	2.885	1.00
80_L	88_G	2.682	1.00
71_S	120_R	2.384	0.99
42_F	76_F	2.300	0.99
140_E	143_K	2.256	0.99
121_Y	214_E	2.220	0.99
135_L	202_K	2.217	0.99
70_T	95_F	2.213	0.99
41_Q	79_T	2.198	0.98
35_I	84_I	2.197	0.98
17_T	89_Y	2.116	0.98
194_A	197_E	2.086	0.98
110_I	114_L	2.033	0.97
129_K	145_M	1.877	0.96
173_D	209_P	1.863	0.96
35_I	38_V	1.834	0.95
123_V	170_G	1.829	0.95
111_N	115_S	1.822	0.95
168_S	172_G	1.774	0.94
144_I	204_I	1.769	0.94
192_V	205_T	1.757	0.94
185_I	212_V	1.740	0.94
176_F	210_I	1.726	0.93
75_E	79_T	1.724	0.93
33_N	37_S	1.691	0.93
97_V	186_E	1.690	0.93
38_V	42_F	1.688	0.93
144_I	200_A	1.646	0.92
143_K	147_E	1.638	0.92
112_K	115_S	1.637	0.92
154_T	194_A	1.615	0.91
131_V	208_E	1.612	0.91
36_E	40_S	1.595	0.90
156_P	194_A	1.555	0.89
8_Y	186_E	1.548	0.89
20_W	31_A	1.532	0.89
153_R	156_P	1.516	0.88
161_I	191_V	1.510	0.88
142_E	146_K	1.507	0.88
147_E	199_K	1.493	0.87
120_R	214_E	1.486	0.87
11_I	96_S	1.451	0.86
143_K	146_K	1.446	0.85
45_N	75_E	1.427	0.85
198_V	204_I	1.421	0.84
136_L	195_L	1.415	0.84
170_G	195_L	1.401	0.84
142_E	153_R	1.391	0.83
116_L	162_R	1.391	0.83
70_T	185_I	1.385	0.83
36_E	218_L	1.376	0.82
62_I	122_F	1.370	0.82
130_D	205_T	1.368	0.82
29_R	33_N	1.342	0.81
80_L	85_R	1.340	0.81
94_L	168_S	1.331	0.80
15_K	89_Y	1.323	0.80
18_N	22_S	1.316	0.79
131_V	205_T	1.311	0.79
34_E	83_K	1.295	0.78
71_S	121_Y	1.263	0.77
217_G	220_L	1.253	0.76
94_L	172_G	1.241	0.75
187_N	190_E	1.239	0.75
137_P	143_K	1.235	0.75
147_E	151_T	1.218	0.74
139_E	142_E	1.210	0.73
144_I	147_E	1.206	0.73
151_T	194_A	1.179	0.71
41_Q	44_N	1.172	0.71
96_S	177_V	1.164	0.70
75_E	217_G	1.163	0.70
130_D	203_W	1.152	0.70
109_D	112_K	1.147	0.69
49_L	63_Y	1.146	0.69
147_E	198_V	1.142	0.69
38_V	80_L	1.139	0.69
18_N	21_W	1.128	0.68
155_H	194_A	1.117	0.67
39_E	218_L	1.117	0.67
145_M	171_V	1.114	0.67
111_N	114_L	1.113	0.67
101_S	129_K	1.112	0.67
123_V	168_S	1.108	0.67
42_F	83_K	1.107	0.66
109_D	114_L	1.107	0.66
70_T	171_V	1.103	0.66
51_R	83_K	1.100	0.66
137_P	140_E	1.090	0.65
171_V	185_I	1.089	0.65
31_A	87_L	1.085	0.65
149_I	210_I	1.052	0.62
110_I	113_V	1.042	0.62
94_L	177_V	1.038	0.61
94_L	211_L	1.035	0.61
193_E	197_E	1.028	0.61
55_L	168_S	1.015	0.60
150_E	153_R	1.009	0.59
35_I	69_D	1.002	0.59
9_F	61_I	0.988	0.58
125_Y	196_R	0.978	0.57
96_S	167_Y	0.976	0.57
110_I	115_S	0.975	0.57
35_I	63_Y	0.974	0.56
39_E	51_R	0.965	0.56
31_A	78_Y	0.965	0.56
179_V	188_W	0.964	0.56
43_R	118_P	0.960	0.55
149_I	176_F	0.958	0.55
98_Y	164_Y	0.951	0.55
97_V	171_V	0.950	0.55
10_Y	77_K	0.949	0.54
64_W	164_Y	0.944	0.54
161_I	164_Y	0.931	0.53
188_W	191_V	0.928	0.53
42_F	63_Y	0.925	0.53
41_Q	61_I	0.912	0.52
38_V	41_Q	0.911	0.51
10_Y	95_F	0.909	0.51
152_A	188_W	0.896	0.50
144_I	195_L	0.891	0.50
31_A	34_E	0.883	0.49
32_I	36_E	0.881	0.49
103_Y	129_K	0.879	0.49
77_K	90_E	0.871	0.48
156_P	182_I	0.859	0.47
101_S	138_F	0.856	0.47
13_S	62_I	0.852	0.47
211_L	214_E	0.852	0.47
57_N	90_E	0.849	0.46
36_E	219_D	0.834	0.45
41_Q	86_D	0.830	0.45
12_S	93_S	0.829	0.45
55_L	95_F	0.828	0.45
124_A	180_Y	0.824	0.44
31_A	88_G	0.821	0.44
125_Y	134_Y	0.816	0.44
125_Y	175_E	0.813	0.44
65_V	76_F	0.803	0.43
164_Y	181_E	0.802	0.43
157_K	182_I	0.791	0.42
17_T	61_I	0.780	0.41
35_I	39_E	0.780	0.41
168_S	197_E	0.778	0.41
37_S	40_S	0.771	0.40
26_E	72_K	0.769	0.40
63_Y	76_F	0.769	0.40
103_Y	145_M	0.762	0.40
93_S	123_V	0.759	0.39
147_E	169_F	0.756	0.39
9_F	64_W	0.754	0.39
53_I	78_Y	0.753	0.39
108_F	112_K	0.753	0.39
73_L	82_S	0.752	0.39
62_I	128_K	0.750	0.39
149_I	213_G	0.747	0.39
71_S	214_E	0.745	0.38
53_I	63_Y	0.741	0.38
169_F	193_E	0.740	0.38
68_S	80_L	0.738	0.38
9_F	215_L	0.735	0.38
175_E	196_R	0.734	0.38
22_S	26_E	0.733	0.37
54_S	85_R	0.730	0.37
38_V	218_L	0.729	0.37
131_V	201_R	0.729	0.37
37_S	79_T	0.729	0.37
62_I	185_I	0.728	0.37
108_F	111_N	0.726	0.37
131_V	202_K	0.725	0.37
9_F	65_V	0.725	0.37
178_V	192_V	0.724	0.37
99_R	189_V	0.721	0.37
17_T	31_A	0.721	0.37
199_K	202_K	0.719	0.36
189_V	207_E	0.715	0.36
10_Y	90_E	0.713	0.36
145_M	193_E	0.708	0.36
174_Y	211_L	0.708	0.36
38_V	79_T	0.706	0.35
83_K	161_I	0.706	0.35
99_R	190_E	0.705	0.35
49_L	65_V	0.701	0.35
75_E	220_L	0.700	0.35
134_Y	196_R	0.690	0.34
27_E	107_N	0.688	0.34
34_E	45_N	0.688	0.34
40_S	44_N	0.687	0.34
6_L	12_S	0.686	0.34
120_R	217_G	0.685	0.34
90_E	155_H	0.684	0.34
163_S	207_E	0.680	0.34
140_E	199_K	0.674	0.33
101_S	145_M	0.673	0.33
74_L	169_F	0.673	0.33
55_L	74_L	0.672	0.33
16_L	78_Y	0.668	0.33
163_S	178_V	0.667	0.33
109_D	113_V	0.665	0.33
10_Y	73_L	0.664	0.32
30_S	154_T	0.663	0.32
150_E	154_T	0.659	0.32
152_A	180_Y	0.659	0.32
153_R	194_A	0.658	0.32
190_E	195_L	0.647	0.31
42_F	218_L	0.646	0.31
51_R	63_Y	0.645	0.31
6_L	10_Y	0.642	0.31
120_R	183_P	0.640	0.31
31_A	184_E	0.637	0.31
122_F	143_K	0.636	0.31
130_D	204_I	0.635	0.30
64_W	74_L	0.633	0.30
36_E	217_G	0.632	0.30
34_E	86_D	0.631	0.30
19_R	87_L	0.625	0.30
191_V	198_V	0.625	0.30
91_S	211_L	0.624	0.30
9_F	137_P	0.621	0.30
153_R	167_Y	0.621	0.30
16_L	80_L	0.620	0.29
41_Q	75_E	0.620	0.29
162_R	191_V	0.619	0.29
107_N	110_I	0.617	0.29
11_I	179_V	0.617	0.29
182_I	187_N	0.616	0.29
58_D	195_L	0.615	0.29
108_F	115_S	0.615	0.29
121_Y	197_E	0.613	0.29
21_W	31_A	0.612	0.29
40_S	215_L	0.606	0.29
151_T	156_P	0.604	0.28
19_R	41_Q	0.603	0.28
33_N	36_E	0.601	0.28
156_P	179_V	0.601	0.28
13_S	91_S	0.601	0.28
43_R	143_K	0.596	0.28
61_I	80_L	0.595	0.28
17_T	44_N	0.591	0.28
135_L	140_E	0.590	0.27
32_I	51_R	0.590	0.27
193_E	207_E	0.586	0.27
108_F	113_V	0.586	0.27
16_L	88_G	0.586	0.27
144_I	169_F	0.583	0.27
44_N	220_L	0.583	0.27
26_E	36_E	0.574	0.26
19_R	122_F	0.574	0.26
53_I	88_G	0.573	0.26
11_I	195_L	0.573	0.26
96_S	138_F	0.572	0.26
124_A	202_K	0.567	0.26
34_E	84_I	0.564	0.26
101_S	147_E	0.564	0.26
9_F	119_L	0.560	0.26
35_I	51_R	0.558	0.25
167_Y	177_V	0.558	0.25
11_I	117_E	0.556	0.25
121_Y	188_W	0.555	0.25
163_S	180_Y	0.554	0.25
47_I	72_K	0.553	0.25
181_E	209_P	0.553	0.25
9_F	194_A	0.553	0.25
145_M	163_S	0.551	0.25
51_R	139_E	0.550	0.25
31_A	168_S	0.550	0.25
83_K	218_L	0.549	0.25
48_S	200_A	0.547	0.25
101_S	193_E	0.545	0.25
26_E	41_Q	0.542	0.25
161_I	205_T	0.540	0.24
132_E	212_V	0.540	0.24
73_L	95_F	0.538	0.24
31_A	115_S	0.538	0.24
70_T	121_Y	0.537	0.24
108_F	169_F	0.536	0.24
15_K	30_S	0.536	0.24
156_P	195_L	0.534	0.24
130_D	206_K	0.534	0.24
140_E	182_I	0.534	0.24
57_N	91_S	0.530	0.24
76_F	120_R	0.530	0.24
75_E	78_Y	0.529	0.24
125_Y	148_H	0.529	0.24
104_T	146_K	0.528	0.24
14_I	85_R	0.526	0.24
102_P	188_W	0.526	0.24
19_R	31_A	0.526	0.24
78_Y	214_E	0.524	0.23
124_A	177_V	0.521	0.23
176_F	195_L	0.520	0.23
14_I	161_I	0.515	0.23
139_E	143_K	0.515	0.23
102_P	203_W	0.512	0.23
50_K	64_W	0.512	0.23
165_T	193_E	0.511	0.23
102_P	200_A	0.510	0.23
114_L	144_I	0.505	0.22
175_E	200_A	0.505	0.22
191_V	195_L	0.504	0.22
44_N	219_D	0.504	0.22
34_E	82_S	0.502	0.22
181_E	185_I	0.502	0.22
104_T	109_D	0.500	0.22
154_T	168_S	0.500	0.22

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3dtzA	3	0.9776	100	0.104	Contact Map
1t0tV	5	0.9821	100	0.128	Contact Map
1vdhA	3	0.991	100	0.129	Contact Map
4wwsA	3	0.9865	100	0.132	Contact Map
3nn1A	3	0.9776	100	0.151	Contact Map
2vxhA	3	0.9372	100	0.184	Contact Map
3qpiA	1	0.6951	100	0.454	Contact Map
4un1B	1	0.417	21.9	0.962	Contact Map
2csfA	1	0.4215	21	0.963	Contact Map
2zbcA	6	0.3587	18.6	0.964	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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