Q97WK7 - SULSO - GREMLIN Contacts

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Q97WK7 - Uncharacterized protein

UniProt:	Q97WK7	Sequences: MEYYNLILYLLVFGADMLIILQTYNEIKMWKTVKGNFVGKVSIIVPIKGIDTRLERNIESLLSQDYPYPYEVIYVVEKGDEVENILKKYNVKIVYSDFNCDSCSGKIRAQISGLLRASNDIIVFADSDTWYPRYWLRNLISPLDKYDTTTTFSWPFPSRITLSNLIRAGFWTLGFESQSLQSSRFLWGGSMALRREFFDNEVLDELSKEWCDDCTLTRIIKRRGGKIGFVMSAIPLNVYDENSLISWSSRQIITILAYSPRGARAYLVAGTFFALILIYSLVYLNIVTFTPYILWIVKNVIRGVKYPKQALIASLMTILAIPYALFLLVFNWNRREVYWRGKRYIVKPLREK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	352 (323)
Sequences:	11333 (9163)
Seq/√Len:	509.8

ECOLI - YAIP PGAC ARNC BCSA GTRB
BACSU - YDAM CSBB YKCC YKOT
HALSA - Q9HSB1 Q9HQQ6 Q9HQP3
SULSO - Q97WK7 Q97W52 Q7LXY2 Q97UK7 Q97TY0 Q97YM4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
51_D	81_E	4.303	1.00
195_R	199_D	4.201	1.00
65_D	137_R	4.009	1.00
42_S	119_N	3.360	1.00
161_T	164_N	3.080	1.00
123_V	192_A	2.727	1.00
75_V	113_G	2.674	1.00
42_S	71_E	2.620	1.00
197_F	225_G	2.549	1.00
81_E	84_N	2.532	1.00
83_E	87_K	2.512	1.00
121_I	143_L	2.491	1.00
174_G	177_S	2.464	1.00
150_T	153_S	2.444	1.00
138_N	232_S	2.401	1.00
121_I	140_I	2.386	1.00
55_E	88_K	2.329	1.00
164_N	167_R	2.177	1.00
161_T	165_L	2.150	1.00
41_V	140_I	2.126	1.00
163_S	167_R	2.102	1.00
40_K	119_N	2.094	1.00
44_I	75_V	2.077	1.00
84_N	88_K	2.060	1.00
40_K	120_D	2.046	1.00
200_N	223_R	2.034	1.00
71_E	119_N	2.034	1.00
142_P	230_V	2.032	1.00
318_I	322_P	2.029	1.00
160_I	164_N	2.022	1.00
149_T	152_F	2.015	1.00
160_I	163_S	1.995	1.00
42_S	117_A	1.979	1.00
215_T	219_I	1.971	1.00
254_T	258_Y	1.968	1.00
139_L	192_A	1.956	1.00
143_L	192_A	1.955	1.00
163_S	166_I	1.955	1.00
121_I	192_A	1.923	1.00
134_Y	138_N	1.917	1.00
149_T	154_W	1.908	1.00
41_V	136_L	1.864	1.00
42_S	73_I	1.851	1.00
106_K	110_Q	1.839	1.00
55_E	59_E	1.796	1.00
60_S	131_Y	1.770	1.00
40_K	118_S	1.767	1.00
324_A	327_L	1.761	1.00
196_E	200_N	1.756	1.00
267_L	270_G	1.715	1.00
170_F	173_L	1.703	1.00
186_L	191_M	1.699	1.00
295_W	299_N	1.688	1.00
74_Y	86_L	1.662	1.00
270_G	273_F	1.642	1.00
49_G	78_K	1.641	1.00
59_E	89_Y	1.613	1.00
123_V	136_L	1.613	1.00
65_D	134_Y	1.598	1.00
150_T	157_P	1.582	1.00
50_I	127_S	1.571	1.00
161_T	166_I	1.562	1.00
91_V	94_V	1.557	1.00
248_S	251_Q	1.552	1.00
200_N	225_G	1.547	1.00
71_E	94_V	1.544	1.00
55_E	85_I	1.537	1.00
152_F	157_P	1.526	1.00
254_T	257_A	1.525	1.00
330_F	334_R	1.512	1.00
66_Y	140_I	1.511	1.00
169_G	172_T	1.505	1.00
247_W	251_Q	1.503	1.00
47_I	82_V	1.502	1.00
164_N	168_A	1.497	1.00
117_A	195_R	1.485	1.00
149_T	153_S	1.484	1.00
320_A	324_A	1.449	1.00
315_L	318_I	1.445	1.00
135_W	190_S	1.432	1.00
150_T	154_W	1.431	1.00
160_I	165_L	1.428	1.00
114_L	122_I	1.413	1.00
151_T	157_P	1.399	1.00
163_S	168_A	1.396	1.00
247_W	250_R	1.396	1.00
150_T	155_P	1.395	1.00
169_G	173_L	1.382	1.00
86_L	95_Y	1.376	1.00
45_V	61_L	1.374	1.00
91_V	96_S	1.361	1.00
125_A	131_Y	1.361	1.00
71_E	118_S	1.348	1.00
153_S	157_P	1.319	1.00
197_F	220_I	1.318	1.00
321_I	324_A	1.313	1.00
91_V	95_Y	1.311	1.00
38_V	67_P	1.301	1.00
112_S	116_R	1.287	1.00
138_N	141_S	1.279	1.00
60_S	130_W	1.274	1.00
113_G	117_A	1.273	1.00
58_I	89_Y	1.264	1.00
321_I	325_L	1.257	1.00
328_L	331_N	1.256	1.00
328_L	334_R	1.253	1.00
63_S	133_R	1.245	1.00
131_Y	135_W	1.228	1.00
295_W	302_R	1.227	1.00
318_I	321_I	1.217	1.00
145_K	226_K	1.213	1.00
65_D	133_R	1.212	1.00
244_L	248_S	1.210	1.00
147_D	226_K	1.208	1.00
295_W	298_K	1.206	1.00
49_G	79_G	1.182	1.00
171_W	174_G	1.181	1.00
170_F	174_G	1.170	1.00
169_G	174_G	1.168	1.00
318_I	323_Y	1.162	1.00
270_G	274_A	1.162	1.00
291_P	295_W	1.158	1.00
76_V	83_E	1.148	1.00
267_L	271_T	1.141	1.00
84_N	87_K	1.137	1.00
267_L	273_F	1.134	1.00
59_E	63_S	1.133	1.00
254_T	260_P	1.130	1.00
317_T	324_A	1.126	1.00
56_R	59_E	1.118	1.00
244_L	247_W	1.110	1.00
75_V	109_A	1.098	1.00
318_I	324_A	1.093	1.00
39_G	140_I	1.081	1.00
110_Q	124_F	1.068	1.00
265_A	274_A	1.057	1.00
17_M	25_N	1.053	1.00
48_K	103_C	1.049	1.00
317_T	320_A	1.048	1.00
22_Q	26_E	1.047	1.00
56_R	130_W	1.047	1.00
40_K	71_E	1.047	1.00
151_T	155_P	1.044	1.00
151_T	154_W	1.042	1.00
152_F	156_F	1.039	1.00
70_Y	136_L	1.031	1.00
85_I	89_Y	1.024	1.00
38_V	137_R	1.022	1.00
121_I	194_R	1.017	1.00
266_Y	270_G	1.016	1.00
122_I	195_R	1.016	1.00
43_I	123_V	1.015	1.00
264_R	270_G	1.015	1.00
114_L	198_F	1.014	1.00
12_V	15_A	1.013	1.00
161_T	168_A	1.010	1.00
162_L	166_I	1.008	1.00
150_T	158_S	1.001	1.00
265_A	269_A	1.000	1.00
66_Y	70_Y	0.998	1.00
148_T	228_G	0.997	1.00
77_E	105_G	0.995	1.00
152_F	155_P	0.995	1.00
237_N	240_D	0.990	1.00
317_T	321_I	0.985	1.00
44_I	113_G	0.984	1.00
319_L	322_P	0.981	1.00
212_D	215_T	0.980	1.00
149_T	155_P	0.973	1.00
196_E	199_D	0.969	1.00
122_I	198_F	0.965	1.00
290_T	294_L	0.959	1.00
265_A	270_G	0.957	1.00
94_V	116_R	0.954	1.00
85_I	88_K	0.947	1.00
160_I	166_I	0.946	1.00
317_T	322_P	0.945	1.00
15_A	18_L	0.944	1.00
159_R	163_S	0.943	1.00
194_R	225_G	0.940	1.00
310_A	313_A	0.939	1.00
120_D	196_E	0.938	1.00
174_G	178_Q	0.931	1.00
220_I	225_G	0.931	1.00
22_Q	25_N	0.930	1.00
42_S	195_R	0.929	1.00
15_A	19_I	0.927	1.00
320_A	327_L	0.925	1.00
100_C	103_C	0.925	1.00
278_I	281_L	0.923	1.00
150_T	156_F	0.918	1.00
269_A	273_F	0.917	1.00
323_Y	326_F	0.915	1.00
47_I	54_L	0.912	1.00
112_S	115_L	0.911	1.00
81_E	85_I	0.911	1.00
244_L	251_Q	0.906	1.00
54_L	74_Y	0.902	1.00
13_F	16_D	0.901	1.00
73_I	113_G	0.900	1.00
39_G	66_Y	0.900	1.00
82_V	86_L	0.900	1.00
264_R	267_L	0.899	1.00
320_A	323_Y	0.898	1.00
322_P	326_F	0.898	1.00
296_I	300_V	0.895	1.00
162_L	167_R	0.890	1.00
274_A	278_I	0.889	1.00
14_G	22_Q	0.888	1.00
274_A	277_L	0.881	1.00
238_V	241_E	0.874	1.00
110_Q	203_L	0.874	1.00
106_K	109_A	0.873	1.00
16_D	20_I	0.870	1.00
253_I	258_Y	0.868	1.00
315_L	319_L	0.865	1.00
71_E	92_K	0.864	1.00
293_I	297_V	0.861	1.00
318_I	325_L	0.861	1.00
255_I	258_Y	0.860	1.00
19_I	22_Q	0.854	1.00
299_N	302_R	0.853	1.00
294_L	298_K	0.849	1.00
159_R	164_N	0.847	1.00
292_Y	295_W	0.845	1.00
162_L	165_L	0.842	1.00
288_T	295_W	0.836	1.00
289_F	293_I	0.834	1.00
161_T	167_R	0.833	1.00
160_I	167_R	0.832	1.00
235_P	239_Y	0.832	1.00
311_L	315_L	0.832	1.00
155_P	158_S	0.828	1.00
171_W	175_F	0.825	1.00
54_L	82_V	0.822	1.00
129_T	235_P	0.817	1.00
24_Y	27_I	0.816	1.00
151_T	156_F	0.814	1.00
35_G	38_V	0.812	1.00
86_L	89_Y	0.807	1.00
296_I	299_N	0.803	1.00
270_G	278_I	0.800	1.00
323_Y	327_L	0.800	1.00
151_T	158_S	0.799	1.00
313_A	318_I	0.798	1.00
243_S	247_W	0.798	1.00
49_G	80_D	0.796	1.00
109_A	113_G	0.795	1.00
154_W	157_P	0.795	1.00
16_D	19_I	0.794	1.00
321_I	327_L	0.793	1.00
322_P	327_L	0.789	1.00
143_L	194_R	0.785	1.00
149_T	157_P	0.783	1.00
104_S	108_R	0.782	1.00
271_T	274_A	0.782	1.00
304_V	308_K	0.782	1.00
268_V	271_T	0.779	1.00
119_N	195_R	0.777	1.00
194_R	197_F	0.777	1.00
265_A	268_V	0.774	1.00
149_T	156_F	0.770	1.00
266_Y	269_A	0.770	1.00
71_E	117_A	0.766	1.00
73_I	117_A	0.765	1.00
263_A	270_G	0.765	1.00
47_I	127_S	0.764	1.00
310_A	314_S	0.764	1.00
134_Y	137_R	0.763	1.00
61_L	131_Y	0.759	1.00
310_A	320_A	0.759	1.00
320_A	325_L	0.756	1.00
322_P	325_L	0.754	1.00
111_I	115_L	0.753	1.00
123_V	135_W	0.753	1.00
45_V	57_N	0.753	1.00
310_A	321_I	0.752	1.00
255_I	259_S	0.752	1.00
277_L	280_S	0.751	1.00
303_G	306_Y	0.749	1.00
172_T	177_S	0.749	1.00
83_E	86_L	0.748	1.00
292_Y	296_I	0.747	1.00
50_I	53_R	0.746	1.00
43_I	136_L	0.745	1.00
153_S	156_F	0.743	1.00
142_P	228_G	0.741	1.00
328_L	332_W	0.740	1.00
190_S	235_P	0.739	1.00
106_K	188_G	0.736	1.00
51_D	85_I	0.734	1.00
47_I	74_Y	0.732	1.00
266_Y	274_A	0.732	1.00
298_K	302_R	0.732	1.00
264_R	269_A	0.731	1.00
329_V	333_N	0.730	1.00
16_D	25_N	0.730	1.00
315_L	321_I	0.729	1.00
14_G	18_L	0.728	1.00
313_A	316_M	0.726	1.00
254_T	259_S	0.725	1.00
316_M	320_A	0.718	1.00
313_A	319_L	0.716	1.00
313_A	317_T	0.714	1.00
263_A	267_L	0.713	1.00
102_S	105_G	0.709	1.00
288_T	292_Y	0.709	1.00
107_I	111_I	0.708	1.00
316_M	319_L	0.707	1.00
217_T	227_I	0.706	1.00
13_F	17_M	0.701	1.00
61_L	72_V	0.701	1.00
253_I	257_A	0.698	1.00
57_N	60_S	0.698	1.00
277_L	281_L	0.697	1.00
263_A	266_Y	0.696	1.00
298_K	301_I	0.695	1.00
314_S	318_I	0.695	1.00
54_L	86_L	0.695	1.00
266_Y	273_F	0.694	1.00
193_L	220_I	0.693	1.00
310_A	315_L	0.689	1.00
114_L	117_A	0.689	1.00
304_V	307_P	0.686	1.00
315_L	320_A	0.685	1.00
64_Q	136_L	0.682	1.00
331_N	334_R	0.681	1.00
215_T	218_R	0.678	1.00
268_V	273_F	0.676	1.00
267_L	274_A	0.676	1.00
40_K	69_P	0.676	1.00
313_A	320_A	0.675	1.00
288_T	299_N	0.672	1.00
178_Q	182_S	0.672	1.00
34_K	37_F	0.668	1.00
178_Q	181_Q	0.668	1.00
317_T	327_L	0.665	1.00
206_L	209_E	0.664	1.00
83_E	95_Y	0.664	1.00
18_L	26_E	0.663	1.00
242_N	246_S	0.660	1.00
82_V	85_I	0.660	1.00
266_Y	271_T	0.659	1.00
57_N	61_L	0.659	1.00
129_T	237_N	0.658	1.00
22_Q	29_M	0.656	1.00
78_K	82_V	0.656	1.00
293_I	296_I	0.656	1.00
270_G	276_I	0.655	1.00
321_I	326_F	0.654	1.00
271_T	275_L	0.654	1.00
264_R	274_A	0.653	1.00
316_M	321_I	0.652	1.00
314_S	321_I	0.650	1.00
162_L	168_A	0.650	1.00
12_V	16_D	0.649	1.00
178_Q	183_S	0.649	1.00
64_Q	131_Y	0.646	1.00
57_N	62_L	0.645	1.00
319_L	323_Y	0.643	1.00
235_P	238_V	0.642	1.00
107_I	212_D	0.642	1.00
13_F	22_Q	0.641	1.00
69_P	119_N	0.641	1.00
16_D	23_T	0.640	1.00
13_F	18_L	0.636	1.00
212_D	217_T	0.635	1.00
237_N	241_E	0.633	1.00
171_W	177_S	0.633	1.00
179_S	183_S	0.632	1.00
313_A	321_I	0.631	1.00
48_K	340_R	0.630	1.00
262_G	265_A	0.629	1.00
257_A	260_P	0.629	1.00
64_Q	137_R	0.628	1.00
27_I	31_K	0.627	1.00
219_I	222_R	0.626	1.00
292_Y	299_N	0.625	1.00
154_W	158_S	0.624	1.00
317_T	323_Y	0.624	1.00
111_I	114_L	0.621	1.00
160_I	168_A	0.618	1.00
42_S	118_S	0.617	1.00
245_I	249_S	0.615	1.00
49_G	76_V	0.614	1.00
23_T	26_E	0.614	1.00
93_I	96_S	0.613	1.00
25_N	28_K	0.613	1.00
159_R	166_I	0.611	1.00
297_V	301_I	0.610	1.00
262_G	267_L	0.610	1.00
90_N	93_I	0.609	1.00
15_A	26_E	0.609	1.00
198_F	203_L	0.607	1.00
26_E	30_W	0.606	1.00
16_D	22_Q	0.606	1.00
212_D	218_R	0.605	1.00
139_L	233_A	0.604	0.99
165_L	168_A	0.603	0.99
129_T	189_G	0.602	0.99
55_E	89_Y	0.602	0.99
312_I	315_L	0.598	0.99
262_G	270_G	0.596	0.99
262_G	266_Y	0.595	0.99
117_A	122_I	0.595	0.99
269_A	274_A	0.592	0.99
277_L	284_L	0.592	0.99
291_P	299_N	0.592	0.99
18_L	22_Q	0.589	0.99
14_G	17_M	0.589	0.99
316_M	324_A	0.588	0.99
211_C	214_C	0.588	0.99
43_I	70_Y	0.587	0.99
15_A	22_Q	0.586	0.99
92_K	95_Y	0.585	0.99
22_Q	27_I	0.585	0.99
153_S	158_S	0.584	0.99
18_L	21_L	0.583	0.99
330_F	333_N	0.581	0.99
316_M	327_L	0.581	0.99
139_L	143_L	0.579	0.99
234_I	240_D	0.578	0.99
45_V	74_Y	0.577	0.99
294_L	302_R	0.576	0.99
16_D	26_E	0.576	0.99
175_F	178_Q	0.575	0.99
317_T	325_L	0.573	0.99
212_D	220_I	0.567	0.99
249_S	252_I	0.565	0.99
315_L	322_P	0.562	0.99
43_I	61_L	0.562	0.99
280_S	283_Y	0.561	0.99
310_A	316_M	0.559	0.99
21_L	25_N	0.558	0.99
26_E	29_M	0.556	0.99
23_T	28_K	0.554	0.99
288_T	291_P	0.553	0.99
19_I	23_T	0.552	0.99
230_V	233_A	0.550	0.99
57_N	125_A	0.549	0.99
24_Y	28_K	0.549	0.99
273_F	278_I	0.548	0.99
45_V	72_V	0.547	0.99
263_A	274_A	0.546	0.99
263_A	278_I	0.546	0.99
124_F	191_M	0.546	0.99
44_I	124_F	0.545	0.99
120_D	194_R	0.545	0.99
179_S	182_S	0.544	0.99
25_N	31_K	0.543	0.99
257_A	261_R	0.543	0.99
265_A	271_T	0.541	0.99
132_P	236_L	0.540	0.99
131_Y	190_S	0.538	0.99
270_G	277_L	0.537	0.99
38_V	66_Y	0.537	0.99
292_Y	298_K	0.534	0.99
171_W	176_E	0.533	0.99
236_L	240_D	0.529	0.99
264_R	271_T	0.529	0.99
62_L	90_N	0.528	0.99
96_S	112_S	0.525	0.99
110_Q	113_G	0.523	0.99
106_K	126_D	0.523	0.99
278_I	282_V	0.522	0.99
43_I	64_Q	0.522	0.99
17_M	22_Q	0.521	0.99
189_G	247_W	0.521	0.99
318_I	327_L	0.521	0.99
291_P	294_L	0.520	0.98
303_G	308_K	0.519	0.98
262_G	268_V	0.517	0.98
139_L	190_S	0.516	0.98
23_T	27_I	0.516	0.98
173_L	177_S	0.510	0.98
290_T	293_I	0.508	0.98
106_K	212_D	0.508	0.98
289_F	292_Y	0.508	0.98
40_K	70_Y	0.507	0.98
253_I	256_L	0.504	0.98
125_A	190_S	0.502	0.98
319_L	324_A	0.501	0.98
17_M	26_E	0.501	0.98
159_R	167_R	0.500	0.98

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4p02A	1	0.9886	100	0.391	Contact Map
3bcvA	2	0.4972	100	0.538	Contact Map
2z86A	2	0.7841	100	0.539	Contact Map
3l7iA	4	0.0682	100	0.547	Contact Map
5ajoA	1	0.9773	100	0.547	Contact Map
2d7iA	1	0.9403	100	0.548	Contact Map
1xhbA	1	0.9034	100	0.55	Contact Map
1qg8A	1	0.6165	100	0.552	Contact Map
4fixA	3	0.9574	100	0.56	Contact Map
2bo4A	4	0.8182	100	0.564	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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