GREMLIN Database
Q97WG5 - Peroxiredoxin, bacterioferritin comigratory protein homolog (Bcp-3)
UniProt: Q97WG5 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 149 (140)
Sequences: 12370 (7912)
Seq/√Len: 668.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
28_K118_E3.5271.00
50_T84_K2.8241.00
37_S74_Q2.7481.00
11_E20_K2.5421.00
27_K62_E2.5221.00
7_A99_Y2.5011.00
14_S18_K2.4571.00
117_D123_V2.3681.00
6_E121_K2.2591.00
53_Y57_K2.2411.00
15_T78_A2.1051.00
103_N110_Q2.0871.00
9_D22_S2.0201.00
52_L55_E2.0191.00
117_D121_K1.9271.00
9_D20_K1.8891.00
20_K23_D1.8591.00
14_S19_I1.8191.00
53_Y84_K1.7531.00
46_L83_A1.7211.00
94_T98_L1.7131.00
19_I24_F1.7131.00
12_A88_V1.6921.00
12_A95_I1.6661.00
124_N142_I1.6261.00
68_V93_K1.6171.00
68_V96_S1.5641.00
14_S86_P1.5501.00
61_A143_I1.4601.00
52_L136_A1.4571.00
57_K62_E1.4441.00
38_F81_Y1.3781.00
38_F76_K1.3511.00
24_F64_I1.3241.00
137_D141_E1.3171.00
29_V62_E1.2941.00
75_K79_E1.2921.00
30_I115_I1.2901.00
116_I122_I1.2861.00
50_T85_F1.2331.00
24_F29_V1.2221.00
25_R29_V1.2211.00
96_S109_A1.1971.00
65_G87_I1.1941.00
93_K97_K1.1921.00
28_K61_A1.1781.00
54_D57_K1.1771.00
28_K123_V1.1571.00
3_V124_N1.1541.00
68_V109_A1.1501.00
33_F66_V1.1491.00
29_V64_I1.1441.00
95_I99_Y1.1401.00
47_Q51_E1.1401.00
32_Y46_L1.0951.00
52_L137_D1.0941.00
138_K141_E1.0861.00
126_L142_I1.0721.00
14_S88_V1.0721.00
123_V129_L1.0701.00
13_E71_I1.0681.00
55_E58_K1.0661.00
48_R52_L1.0641.00
30_I113_T1.0521.00
25_R120_G1.0511.00
21_L29_V1.0441.00
101_V112_V1.0431.00
50_T54_D1.0421.00
29_V120_G1.0401.00
104_E107_T1.0331.00
48_R51_E1.0311.00
93_K102_L1.0021.00
10_F99_Y0.9951.00
10_F95_I0.9891.00
76_K79_E0.9841.00
38_F80_K0.9771.00
97_K102_L0.9761.00
47_Q50_T0.9741.00
112_V127_K0.9721.00
115_I142_I0.9721.00
16_L75_K0.9711.00
44_R133_E0.9611.00
30_I61_A0.9511.00
6_E25_R0.9511.00
62_E86_P0.9501.00
72_D76_K0.9451.00
28_K60_N0.9441.00
7_A122_I0.9381.00
22_S25_R0.9221.00
71_I89_A0.9181.00
32_Y45_E0.9171.00
29_V116_I0.9171.00
49_F63_V0.9131.00
115_I124_N0.9011.00
55_E140_L0.8921.00
70_K73_T0.8901.00
105_R108_S0.8891.00
74_Q77_F0.8891.00
59_L143_I0.8821.00
75_K78_A0.8791.00
94_T97_K0.8621.00
43_T81_Y0.8591.00
64_I88_V0.8581.00
45_E113_T0.8541.00
31_L116_I0.8481.00
32_Y85_F0.8471.00
134_E137_D0.8391.00
110_Q128_N0.8361.00
38_F73_T0.8311.00
54_D58_K0.8271.00
7_A116_I0.8241.00
60_N118_E0.8181.00
101_V114_F0.8181.00
19_I64_I0.8141.00
3_V125_I0.8121.00
93_K96_S0.8071.00
78_A87_I0.7981.00
54_D84_K0.7981.00
9_D21_L0.7971.00
28_K115_I0.7931.00
44_R47_Q0.7881.00
71_I75_K0.7881.00
114_F122_I0.7801.00
39_T111_R0.7721.00
97_K107_T0.7691.00
115_I126_L0.7641.00
112_V125_I0.7641.00
72_D75_K0.7601.00
50_T53_Y0.7551.00
30_I49_F0.7541.00
134_E138_K0.7541.00
96_S102_L0.7531.00
114_F125_I0.7401.00
47_Q81_Y0.7401.00
26_G118_E0.7371.00
124_N138_K0.7351.00
7_A21_L0.7321.00
5_E125_I0.7311.00
66_V95_I0.7201.00
15_T75_K0.7131.00
34_Y37_S0.7091.00
21_L24_F0.7061.00
16_L78_A0.7031.00
56_F140_L0.6981.00
13_E91_D0.6951.00
49_F139_S0.6911.00
36_K108_S0.6871.00
90_D93_K0.6851.00
135_H138_K0.6741.00
76_K80_K0.6741.00
95_I98_L0.6711.00
33_F99_Y0.6691.00
45_E49_F0.6681.00
31_L99_Y0.6611.00
110_Q127_K0.6561.00
65_G85_F0.6511.00
55_E59_L0.6501.00
103_N106_G0.6481.00
102_L107_T0.6481.00
35_P39_T0.6481.00
3_V122_I0.6441.00
7_A95_I0.6431.00
8_P98_L0.6431.00
33_F95_I0.6381.00
59_L140_L0.6321.00
15_T86_P0.6311.00
53_Y62_E0.6291.00
24_F62_E0.6251.00
103_N107_T0.6211.00
113_T139_S0.6171.00
126_L139_S0.6131.00
52_L56_F0.6101.00
37_S73_T0.6071.00
33_F101_V0.6061.00
69_D73_T0.6001.00
40_S43_T0.5971.00
64_I86_P0.5941.00
36_K70_K0.5931.00
103_N108_S0.5931.00
108_S130_K0.5921.00
32_Y49_F0.5891.00
73_T76_K0.5871.00
28_K143_I0.5821.00
46_L65_G0.5751.00
32_Y113_T0.5721.00
13_E18_K0.5701.00
34_Y77_F0.5681.00
19_I23_D0.5661.00
69_D74_Q0.5641.00
35_P38_F0.5611.00
70_K91_D0.5581.00
15_T71_I0.5551.00
48_R136_A0.5531.00
22_S120_G0.5501.00
32_Y41_G0.5491.00
36_K69_D0.5471.00
116_I120_G0.5451.00
34_Y65_G0.5441.00
36_K39_T0.5421.00
49_F136_A0.5411.00
9_D25_R0.5371.00
6_E9_D0.5371.00
56_F61_A0.5371.00
30_I139_S0.5341.00
57_K84_K0.5230.99
30_I143_I0.5140.99
46_L85_F0.5140.99
10_F21_L0.5120.99
110_Q130_K0.5050.99
106_G130_K0.5000.99
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2v2gA 2 1 100 0.206 Contact Map
1prxA 2 1 100 0.214 Contact Map
1xccA 2 1 100 0.221 Contact Map
3a2vA 5 1 100 0.222 Contact Map
3w6gA 6 1 100 0.222 Contact Map
1xiyA 1 0.9732 100 0.257 Contact Map
1xvwA 3 0.9933 100 0.263 Contact Map
3tjjA 3 1 100 0.281 Contact Map
4rqxA 3 1 100 0.289 Contact Map
2pn8A 4 1 100 0.29 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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