Q97WG1 - SULSO - GREMLIN Contacts

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Q97WG1 - Sulfide-quinone reductase related protein (Sqr)

UniProt:	Q97WG1	Sequences: MRLRSMTKVLVLGARFGGLSAAYALKRLAGNKAEIKVINNTRFSYFRPALPHVATGVINENDVMVDLTKALPEKRINFQQGTVEKIDASGGLVYYTKPDGDKAEEDYDYLIIALGAHLGTELVKGWDKYGYSVCELDYALKLREKLKDFKGGTIAIGSGLFYQGKSPKPKVPENYVPVADAACEGPIFEMSLMLSGYFKKKGMLNKVKFVVFSPGEYLSDLSTMSRKIVREMYKQMGIELVDNFRIKEIRENEIADEAGKTIKADLTILIPPYTGNPALKNSTPDLIDDGGFVPTDLNMVSINYDNVYAVGDANSLTVPKLGYLAVKTGNIAAQHLATRLGVQVKVDQYYPTIICVADNPFEGFGIAVKDDTWYGGTTSIAAPSPINHIKKELFHKYFIWTKGDMALEKFLASW	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	414 (331)
Sequences:	24857 (17287)
Seq/√Len:	950.2

ECOLI - DHNA STHA RCLA HCAD DLDH GSHR NORW TRXB NIRB AHPF PRET
BACSU - YUMB YJLD YUTJ DLDH1 DLDH2 DLDH3 TRXB DHNA NASB FENR1 YPDA FENR2 NASD CZCO
HALSA - Q9HR27 Q9HP48 DLDH Q9HSN0 P82854
SULSO - Q97WG1 Q97VJ3 Q97WE3 Q97YT2 Q97UV0 Q97VD9 Q97UP4 Q97XZ3 Q97ZB4 Q97U72 Q97Z19 Q97Y24 Q97W27 Q97V69 Q97Z14 FENR Q97VQ4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
40_N	82_T	4.269	1.00
179_A	264_A	3.979	1.00
8_K	34_E	3.403	1.00
296_D	300_V	3.337	1.00
91_G	306_N	3.163	1.00
210_V	241_V	3.129	1.00
208_K	239_E	3.071	1.00
92_L	104_E	2.981	1.00
230_R	234_K	2.845	1.00
21_A	111_I	2.606	1.00
286_L	294_P	2.526	1.00
59_N	62_D	2.518	1.00
94_Y	104_E	2.483	1.00
7_T	36_K	2.438	1.00
124_K	248_E	2.413	1.00
87_D	90_G	2.373	1.00
248_E	255_A	2.370	1.00
10_L	93_V	2.370	1.00
241_V	260_K	2.289	1.00
214_P	245_R	2.279	1.00
88_A	304_Y	2.262	1.00
8_K	36_K	2.258	1.00
119_G	274_T	2.229	1.00
250_R	255_A	2.183	1.00
107_Y	110_L	2.175	1.00
34_E	77_N	2.135	1.00
17_G	310_V	2.094	1.00
92_L	106_D	2.094	1.00
36_K	79_Q	2.080	1.00
109_Y	306_N	2.067	1.00
179_A	212_F	2.047	1.00
10_L	105_E	2.040	1.00
288_D	292_F	2.037	1.00
38_I	105_E	2.024	1.00
117_H	274_T	2.005	1.00
177_P	208_K	2.002	1.00
278_A	281_N	1.984	1.00
8_K	108_D	1.979	1.00
6_M	106_D	1.974	1.00
87_D	92_L	1.968	1.00
255_A	261_T	1.957	1.00
9_V	25_L	1.956	1.00
117_H	276_N	1.954	1.00
216_E	243_N	1.950	1.00
6_M	108_D	1.937	1.00
10_L	38_I	1.913	1.00
7_T	77_N	1.912	1.00
245_R	257_E	1.892	1.00
88_A	307_V	1.888	1.00
210_V	239_E	1.871	1.00
84_E	94_Y	1.837	1.00
59_N	63_V	1.830	1.00
332_A	336_L	1.809	1.00
361_F	366_I	1.765	1.00
217_Y	226_R	1.747	1.00
111_I	336_L	1.744	1.00
247_K	257_E	1.740	1.00
114_L	313_A	1.669	1.00
179_A	254_I	1.647	1.00
188_F	211_V	1.625	1.00
244_F	258_A	1.598	1.00
11_V	22_A	1.583	1.00
223_T	364_F	1.582	1.00
308_Y	335_H	1.571	1.00
10_L	36_K	1.547	1.00
241_V	244_F	1.546	1.00
109_Y	308_Y	1.533	1.00
286_L	303_N	1.522	1.00
12_L	83_V	1.509	1.00
79_Q	103_A	1.483	1.00
9_V	33_A	1.482	1.00
223_T	227_K	1.475	1.00
300_V	305_D	1.470	1.00
85_K	94_Y	1.469	1.00
288_D	315_S	1.467	1.00
247_K	255_A	1.459	1.00
331_I	335_H	1.457	1.00
135_E	138_Y	1.454	1.00
293_V	309_A	1.453	1.00
364_F	368_V	1.430	1.00
111_I	310_V	1.425	1.00
81_G	95_Y	1.424	1.00
95_Y	105_E	1.409	1.00
145_K	207_V	1.409	1.00
363_G	367_A	1.394	1.00
230_R	242_D	1.372	1.00
24_A	334_Q	1.370	1.00
329_G	333_A	1.370	1.00
10_L	107_Y	1.367	1.00
232_M	235_Q	1.341	1.00
109_Y	336_L	1.341	1.00
79_Q	105_E	1.341	1.00
361_F	369_K	1.333	1.00
177_P	210_V	1.323	1.00
12_L	112_I	1.321	1.00
213_S	242_D	1.310	1.00
12_L	114_L	1.310	1.00
288_D	294_P	1.304	1.00
231_E	234_K	1.297	1.00
81_G	99_D	1.294	1.00
178_V	207_V	1.281	1.00
212_F	262_I	1.280	1.00
99_D	103_A	1.276	1.00
87_D	91_G	1.269	1.00
177_P	265_D	1.262	1.00
36_K	105_E	1.239	1.00
9_V	111_I	1.234	1.00
199_K	208_K	1.233	1.00
232_M	236_M	1.232	1.00
217_Y	223_T	1.216	1.00
230_R	240_L	1.212	1.00
256_D	262_I	1.205	1.00
66_D	70_A	1.202	1.00
278_A	282_S	1.200	1.00
183_C	213_S	1.195	1.00
244_F	260_K	1.186	1.00
81_G	98_P	1.186	1.00
68_T	72_P	1.181	1.00
38_I	95_Y	1.179	1.00
43_F	46_F	1.179	1.00
134_C	138_Y	1.177	1.00
231_E	235_Q	1.173	1.00
304_Y	307_V	1.172	1.00
7_T	109_Y	1.164	1.00
14_A	39_N	1.161	1.00
188_F	352_T	1.148	1.00
333_A	337_A	1.145	1.00
112_I	313_A	1.139	1.00
110_L	307_V	1.134	1.00
85_K	110_L	1.120	1.00
241_V	262_I	1.117	1.00
86_I	104_E	1.117	1.00
137_D	140_L	1.116	1.00
131_Y	145_K	1.113	1.00
300_V	306_N	1.112	1.00
86_I	94_Y	1.108	1.00
310_V	332_A	1.106	1.00
298_N	335_H	1.097	1.00
264_A	267_T	1.095	1.00
299_M	314_N	1.094	1.00
67_L	71_L	1.087	1.00
138_Y	141_K	1.087	1.00
183_C	218_L	1.086	1.00
67_L	70_A	1.081	1.00
249_I	267_T	1.080	1.00
227_K	230_R	1.079	1.00
299_M	332_A	1.070	1.00
21_A	329_G	1.066	1.00
134_C	142_L	1.066	1.00
66_D	71_L	1.065	1.00
338_T	343_Q	1.065	1.00
136_L	140_L	1.063	1.00
66_D	69_K	1.063	1.00
365_G	368_V	1.060	1.00
28_L	334_Q	1.056	1.00
250_R	261_T	1.050	1.00
130_G	249_I	1.048	1.00
244_F	256_D	1.046	1.00
11_V	18_G	1.042	1.00
69_K	73_E	1.040	1.00
28_L	337_A	1.032	1.00
17_G	325_A	1.029	1.00
217_Y	230_R	1.023	1.00
309_A	313_A	1.019	1.00
212_F	241_V	1.012	1.00
366_I	371_D	1.009	1.00
181_A	267_T	1.008	1.00
24_A	28_L	0.998	1.00
178_V	266_L	0.998	1.00
136_L	139_A	0.995	1.00
113_A	310_V	0.992	1.00
218_L	242_D	0.988	1.00
60_E	63_V	0.984	1.00
8_K	106_D	0.982	1.00
26_K	76_I	0.981	1.00
178_V	198_F	0.978	1.00
343_Q	346_V	0.977	1.00
18_G	22_A	0.976	1.00
332_A	335_H	0.972	1.00
244_F	257_E	0.972	1.00
295_T	314_N	0.965	1.00
199_K	238_I	0.963	1.00
42_R	80_Q	0.963	1.00
65_V	69_K	0.957	1.00
200_K	236_M	0.956	1.00
14_A	37_V	0.956	1.00
38_I	83_V	0.955	1.00
211_V	240_L	0.952	1.00
6_M	34_E	0.952	1.00
85_K	282_S	0.949	1.00
7_T	79_Q	0.946	1.00
21_A	332_A	0.945	1.00
116_A	273_Y	0.942	1.00
221_L	348_Q	0.940	1.00
122_L	126_W	0.935	1.00
197_Y	201_K	0.934	1.00
295_T	309_A	0.930	1.00
287_I	294_P	0.927	1.00
25_L	333_A	0.927	1.00
294_P	303_N	0.924	1.00
293_V	313_A	0.908	1.00
212_F	244_F	0.908	1.00
64_M	67_L	0.906	1.00
372_T	376_G	0.906	1.00
36_K	77_N	0.904	1.00
21_A	310_V	0.902	1.00
68_T	80_Q	0.898	1.00
318_V	324_L	0.897	1.00
95_Y	99_D	0.894	1.00
227_K	231_E	0.890	1.00
144_E	147_K	0.878	1.00
23_Y	74_K	0.874	1.00
228_I	231_E	0.872	1.00
180_D	187_I	0.870	1.00
17_G	113_A	0.869	1.00
39_N	78_F	0.866	1.00
7_T	34_E	0.862	1.00
181_A	269_L	0.860	1.00
21_A	333_A	0.860	1.00
234_K	239_E	0.856	1.00
22_A	76_I	0.855	1.00
33_A	108_D	0.855	1.00
38_I	79_Q	0.855	1.00
10_L	110_L	0.854	1.00
87_D	94_Y	0.853	1.00
107_Y	306_N	0.851	1.00
24_A	333_A	0.850	1.00
134_C	139_A	0.849	1.00
365_G	369_K	0.848	1.00
140_L	143_R	0.844	1.00
228_I	232_M	0.843	1.00
133_V	139_A	0.840	1.00
212_F	256_D	0.839	1.00
256_D	260_K	0.835	1.00
294_P	302_I	0.835	1.00
142_L	266_L	0.832	1.00
372_T	375_G	0.828	1.00
77_N	103_A	0.826	1.00
217_Y	227_K	0.816	1.00
250_R	253_E	0.815	1.00
188_F	233_Y	0.814	1.00
90_G	104_E	0.810	1.00
210_V	262_I	0.808	1.00
119_G	122_L	0.803	1.00
65_V	70_A	0.802	1.00
348_Q	358_D	0.801	1.00
85_K	93_V	0.801	1.00
187_I	213_S	0.797	1.00
65_V	68_T	0.796	1.00
191_S	211_V	0.791	1.00
179_A	262_I	0.791	1.00
253_E	261_T	0.790	1.00
41_T	50_L	0.788	1.00
277_P	281_N	0.788	1.00
373_W	376_G	0.786	1.00
111_I	332_A	0.785	1.00
117_H	277_P	0.785	1.00
8_K	33_A	0.784	1.00
69_K	72_P	0.781	1.00
24_A	330_N	0.778	1.00
134_C	137_D	0.777	1.00
299_M	331_I	0.772	1.00
124_K	127_D	0.770	1.00
82_T	98_P	0.766	1.00
20_S	329_G	0.761	1.00
37_V	71_L	0.759	1.00
239_E	260_K	0.758	1.00
18_G	113_A	0.755	1.00
95_Y	103_A	0.755	1.00
182_A	187_I	0.754	1.00
221_L	358_D	0.753	1.00
52_H	56_G	0.751	1.00
308_Y	339_R	0.751	1.00
292_F	320_K	0.746	1.00
277_P	287_I	0.745	1.00
123_V	126_W	0.742	1.00
109_Y	339_R	0.740	1.00
256_D	259_G	0.737	1.00
330_N	334_Q	0.734	1.00
24_A	27_R	0.733	1.00
148_D	265_D	0.733	1.00
281_N	284_P	0.732	1.00
25_L	336_L	0.731	1.00
9_V	336_L	0.730	1.00
334_Q	339_R	0.727	1.00
133_V	136_L	0.726	1.00
376_G	379_S	0.724	1.00
300_V	308_Y	0.724	1.00
23_Y	27_R	0.724	1.00
275_G	292_F	0.721	1.00
296_D	302_I	0.717	1.00
11_V	21_A	0.717	1.00
20_S	326_V	0.717	1.00
282_S	304_Y	0.716	1.00
213_S	219_S	0.715	1.00
71_L	76_I	0.715	1.00
181_A	271_P	0.714	1.00
121_E	126_W	0.714	1.00
64_M	68_T	0.712	1.00
309_A	314_N	0.712	1.00
215_G	219_S	0.711	1.00
135_E	140_L	0.711	1.00
181_A	246_I	0.710	1.00
191_S	209_F	0.709	1.00
378_T	381_A	0.708	1.00
285_D	293_V	0.705	1.00
129_Y	251_E	0.704	1.00
366_I	372_T	0.704	1.00
300_V	335_H	0.700	1.00
287_I	293_V	0.699	1.00
25_L	33_A	0.699	1.00
25_L	35_I	0.698	1.00
85_K	281_N	0.698	1.00
132_S	138_Y	0.696	1.00
119_G	271_P	0.691	1.00
20_S	24_A	0.689	1.00
252_N	263_K	0.689	1.00
26_K	75_R	0.686	1.00
71_L	74_K	0.686	1.00
68_T	71_L	0.684	1.00
233_Y	240_L	0.684	1.00
292_F	315_S	0.682	1.00
148_D	177_P	0.682	1.00
310_V	329_G	0.681	1.00
196_G	200_K	0.678	1.00
139_A	143_R	0.675	1.00
126_W	269_L	0.673	1.00
120_T	269_L	0.673	1.00
88_A	107_Y	0.672	1.00
347_D	350_Y	0.672	1.00
216_E	223_T	0.671	1.00
85_K	112_I	0.670	1.00
379_S	382_A	0.669	1.00
33_A	337_A	0.668	1.00
246_I	254_I	0.664	1.00
125_G	248_E	0.663	1.00
210_V	264_A	0.662	1.00
183_C	187_I	0.662	1.00
379_S	383_P	0.660	1.00
300_V	304_Y	0.658	1.00
143_R	146_L	0.658	1.00
334_Q	338_T	0.657	1.00
180_D	191_S	0.656	1.00
85_K	107_Y	0.655	1.00
48_P	51_P	0.652	1.00
233_Y	238_I	0.652	1.00
109_Y	340_L	0.652	1.00
308_Y	336_L	0.651	1.00
135_E	139_A	0.650	1.00
47_R	52_H	0.650	1.00
224_M	376_G	0.647	1.00
178_V	268_I	0.647	1.00
8_K	105_E	0.646	1.00
282_S	287_I	0.646	1.00
7_T	10_L	0.645	1.00
218_L	240_L	0.643	1.00
180_D	268_I	0.639	1.00
140_L	146_L	0.639	1.00
83_V	93_V	0.637	1.00
114_L	278_A	0.637	1.00
43_F	78_F	0.636	1.00
18_G	37_V	0.635	1.00
299_M	335_H	0.633	1.00
297_L	342_V	0.630	1.00
100_G	103_A	0.628	1.00
141_K	145_K	0.628	1.00
34_E	108_D	0.626	1.00
70_A	74_K	0.626	1.00
88_A	285_D	0.622	1.00
373_W	377_T	0.618	1.00
25_L	337_A	0.617	1.00
285_D	304_Y	0.617	1.00
127_D	130_G	0.617	1.00
20_S	330_N	0.616	1.00
377_T	382_A	0.614	1.00
134_C	266_L	0.614	1.00
182_A	186_P	0.614	1.00
191_S	238_I	0.613	1.00
375_G	379_S	0.613	1.00
289_D	294_P	0.612	1.00
52_H	55_T	0.612	1.00
182_A	185_G	0.611	1.00
9_V	333_A	0.610	1.00
324_L	328_T	0.610	1.00
190_M	268_I	0.608	1.00
60_E	140_L	0.607	1.00
339_R	342_V	0.607	1.00
21_A	336_L	0.602	1.00
218_L	226_R	0.601	1.00
110_L	306_N	0.599	1.00
298_N	340_L	0.598	1.00
64_M	71_L	0.595	1.00
284_P	287_I	0.594	1.00
314_N	328_T	0.593	1.00
339_R	345_K	0.593	1.00
177_P	263_K	0.591	1.00
133_V	137_D	0.590	1.00
364_F	367_A	0.587	1.00
325_A	329_G	0.587	1.00
342_V	345_K	0.587	1.00
41_T	137_D	0.586	1.00
218_L	230_R	0.585	1.00
91_G	304_Y	0.584	1.00
18_G	39_N	0.583	1.00
185_G	350_Y	0.583	1.00
38_I	81_G	0.582	1.00
196_G	236_M	0.580	1.00
347_D	351_P	0.580	1.00
137_D	141_K	0.579	1.00
327_K	330_N	0.579	1.00
70_A	73_E	0.579	1.00
226_R	230_R	0.579	1.00
224_M	227_K	0.577	1.00
308_Y	332_A	0.576	1.00
50_L	137_D	0.576	1.00
139_A	198_F	0.575	1.00
120_T	127_D	0.572	1.00
147_K	208_K	0.571	1.00
121_E	125_G	0.571	1.00
89_S	304_Y	0.570	1.00
179_A	210_V	0.570	1.00
120_T	126_W	0.570	1.00
12_L	93_V	0.568	1.00
148_D	208_K	0.566	1.00
131_Y	134_C	0.563	1.00
295_T	299_M	0.560	1.00
312_D	325_A	0.556	1.00
81_G	84_E	0.555	1.00
225_S	228_I	0.555	1.00
121_E	269_L	0.555	1.00
84_E	278_A	0.554	1.00
229_V	356_V	0.554	1.00
367_A	372_T	0.552	1.00
120_T	135_E	0.552	1.00
122_L	127_D	0.548	1.00
19_L	37_V	0.548	1.00
71_L	78_F	0.547	1.00
241_V	256_D	0.547	1.00
133_V	142_L	0.546	1.00
223_T	226_R	0.546	1.00
349_Y	352_T	0.545	1.00
126_W	249_I	0.544	1.00
16_F	326_V	0.544	1.00
338_T	342_V	0.544	1.00
377_T	381_A	0.544	1.00
122_L	125_G	0.543	1.00
314_N	318_V	0.542	1.00
86_I	92_L	0.539	1.00
53_V	140_L	0.539	1.00
26_K	35_I	0.536	1.00
91_G	106_D	0.536	1.00
376_G	383_P	0.535	1.00
341_G	344_V	0.535	1.00
355_C	358_D	0.532	1.00
188_F	218_L	0.531	1.00
55_T	190_M	0.531	1.00
134_C	140_L	0.528	1.00
290_G	315_S	0.527	1.00
37_V	76_I	0.527	1.00
47_R	51_P	0.527	1.00
367_A	370_D	0.527	1.00
33_A	109_Y	0.526	1.00
363_G	366_I	0.526	1.00
327_K	331_I	0.525	1.00
140_L	144_E	0.525	1.00
338_T	341_G	0.525	1.00
216_E	242_D	0.524	1.00
147_K	265_D	0.523	1.00
373_W	378_T	0.522	1.00
187_I	270_I	0.521	1.00
77_N	80_Q	0.521	1.00
38_I	93_V	0.520	1.00
139_A	142_L	0.520	1.00
338_T	345_K	0.519	1.00
378_T	384_S	0.519	1.00
87_D	104_E	0.518	1.00
300_V	339_R	0.516	1.00
380_I	384_S	0.516	1.00
372_T	378_T	0.515	1.00
177_P	264_A	0.512	1.00
136_L	143_R	0.510	1.00
9_V	35_I	0.510	1.00
90_G	306_N	0.510	1.00
58_I	62_D	0.509	1.00
144_E	148_D	0.507	1.00
22_A	35_I	0.507	1.00
249_I	269_L	0.504	1.00
40_N	276_N	0.504	1.00
39_N	80_Q	0.504	1.00
136_L	146_L	0.504	1.00
379_S	384_S	0.502	1.00
310_V	336_L	0.501	1.00
11_V	35_I	0.501	1.00
139_A	146_L	0.500	1.00
142_L	146_L	0.500	1.00
378_T	382_A	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4g6hA	2	0.9686	100	0.299	Contact Map
3sx6A	2	0.9082	100	0.372	Contact Map
3h8lA	2	0.785	100	0.376	Contact Map
3hywA	4	0.8937	100	0.378	Contact Map
4nwzA	2	0.913	100	0.379	Contact Map
3vrdB	1	0.8937	100	0.43	Contact Map
1xhcA	1	0.8188	100	0.44	Contact Map
3icsA	2	0.901	100	0.441	Contact Map
4fx9A	2	0.8865	100	0.444	Contact Map
3kljA	1	0.8116	100	0.446	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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