Q97WG0 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97WG0 - Uncharacterized protein

UniProt:	Q97WG0	Sequences: MQQLIDKFINVKGRKIHYIESGDGSLVLLFHGARFNARTWVETNTVDSISSIGYKAISVDLPGFGSSEKIEGISLSEFINLFMNSLGIDKAILLGASMGGKAVLEFSLKYTESVSGLVLVGAVGVEEFEVQLSKLNKIPLLLIWGSRDTVSPKRNYKLILDKVKNAKLEIVGKNHACYLDDPNTFNEKIVNFLKGMK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	197 (179)
Sequences:	55407 (40166)
Seq/√Len:	3002.2

ECOLI - YBFF MHPC PLDB RUTD BIOH YFHR MENH YCJY DLHH YJFP FRSA
BACSU - YRAK YBDG YCGS YFHM YUGF YBFK YQJL YISY NAP YDJP RSBQ YBAC YCLE YVAM MENH EST PLBAC YQKD CAH YTMA
HALSA - Q9HPT9 Q9HHP4 Q9HRJ0 Q9HP29 Q9HPY2
SULSO - Q97WG0 PIP Q7LXY9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
20_E	55_K	4.229	1.00
92_I	116_G	3.633	1.00
45_T	186_N	2.710	1.00
62_P	78_F	2.678	1.00
181_D	184_T	2.482	1.00
80_N	106_F	2.398	1.00
121_G	148_D	2.370	1.00
169_E	188_K	2.337	1.00
141_L	192_F	2.264	1.00
90_K	115_S	2.243	1.00
92_I	115_S	2.217	1.00
120_V	185_F	2.154	1.00
171_V	188_K	2.072	1.00
19_I	37_A	2.061	1.00
15_K	68_E	1.952	1.00
146_S	170_I	1.829	1.00
106_F	110_Y	1.816	1.00
80_N	110_Y	1.764	1.00
80_N	113_S	1.742	1.00
100_G	122_A	1.732	1.00
53_G	190_V	1.731	1.00
160_L	166_A	1.720	1.00
17_H	66_S	1.705	1.00
80_N	84_N	1.703	1.00
93_L	103_V	1.683	1.00
173_K	181_D	1.672	1.00
48_S	186_N	1.670	1.00
21_S	58_S	1.654	1.00
26_L	57_I	1.652	1.00
17_H	37_A	1.643	1.00
20_E	57_I	1.633	1.00
84_N	113_S	1.633	1.00
18_Y	82_F	1.629	1.00
26_L	55_K	1.601	1.00
83_M	91_A	1.598	1.00
140_L	163_V	1.566	1.00
153_K	170_I	1.555	1.00
92_I	193_L	1.526	1.00
26_L	88_I	1.479	1.00
105_E	109_K	1.474	1.00
35_F	39_T	1.449	1.00
188_K	191_N	1.431	1.00
31_H	61_L	1.430	1.00
92_I	118_V	1.415	1.00
107_S	117_L	1.405	1.00
30_F	61_L	1.390	1.00
158_L	162_K	1.388	1.00
25_S	92_I	1.385	1.00
141_L	169_E	1.384	1.00
12_K	81_L	1.356	1.00
61_L	102_A	1.356	1.00
54_Y	92_I	1.347	1.00
77_E	109_K	1.345	1.00
76_S	105_E	1.330	1.00
31_H	64_F	1.322	1.00
17_H	60_D	1.299	1.00
73_I	109_K	1.291	1.00
103_V	117_L	1.269	1.00
184_T	188_K	1.242	1.00
48_S	190_V	1.242	1.00
25_S	115_S	1.242	1.00
106_F	114_V	1.240	1.00
110_Y	113_S	1.222	1.00
79_I	106_F	1.210	1.00
59_V	79_I	1.206	1.00
96_A	178_Y	1.186	1.00
187_E	191_N	1.183	1.00
37_A	60_D	1.175	1.00
106_F	113_S	1.165	1.00
119_L	122_A	1.161	1.00
105_E	108_L	1.161	1.00
118_V	189_I	1.161	1.00
14_R	62_P	1.150	1.00
34_R	64_F	1.142	1.00
104_L	119_L	1.142	1.00
48_S	51_S	1.140	1.00
37_A	66_S	1.139	1.00
163_V	166_A	1.137	1.00
29_L	94_L	1.132	1.00
21_S	46_V	1.131	1.00
30_F	79_I	1.122	1.00
144_W	156_Y	1.119	1.00
46_V	58_S	1.116	1.00
30_F	103_V	1.109	1.00
16_I	78_F	1.095	1.00
82_F	86_L	1.090	1.00
22_G	55_K	1.089	1.00
184_T	187_E	1.081	1.00
57_I	82_F	1.075	1.00
153_K	157_K	1.067	1.00
27_V	54_Y	1.064	1.00
39_T	178_Y	1.058	1.00
29_L	56_A	1.037	1.00
34_R	97_S	1.028	1.00
50_S	53_G	1.025	1.00
84_N	110_Y	1.023	1.00
118_V	141_L	1.023	1.00
97_S	175_H	1.020	1.00
94_L	120_V	1.019	1.00
144_W	170_I	1.009	1.00
157_K	161_D	1.006	1.00
160_L	168_L	0.993	1.00
144_W	168_L	0.980	1.00
18_Y	86_L	0.968	1.00
134_K	162_K	0.967	1.00
48_S	183_N	0.960	1.00
21_S	50_S	0.954	1.00
167_K	188_K	0.935	1.00
94_L	189_I	0.933	1.00
171_V	184_T	0.928	1.00
88_I	91_A	0.920	1.00
174_N	180_D	0.920	1.00
24_G	55_K	0.919	1.00
91_A	114_V	0.917	1.00
158_L	161_D	0.916	1.00
144_W	153_K	0.901	1.00
185_F	189_I	0.900	1.00
146_S	172_G	0.897	1.00
141_L	167_K	0.896	1.00
32_G	97_S	0.896	1.00
80_N	109_K	0.896	1.00
116_G	139_P	0.893	1.00
143_I	171_V	0.885	1.00
37_A	58_S	0.884	1.00
30_F	93_L	0.878	1.00
95_G	103_V	0.878	1.00
25_S	90_K	0.875	1.00
14_R	68_E	0.875	1.00
96_A	176_A	0.873	1.00
173_K	177_C	0.863	1.00
157_K	168_L	0.849	1.00
54_Y	193_L	0.845	1.00
169_E	191_N	0.841	1.00
50_S	56_A	0.838	1.00
120_V	178_Y	0.833	1.00
41_V	58_S	0.831	1.00
157_K	160_L	0.830	1.00
183_N	187_E	0.829	1.00
157_K	170_I	0.825	1.00
143_I	188_K	0.825	1.00
30_F	59_V	0.824	1.00
59_V	82_F	0.822	1.00
83_M	88_I	0.817	1.00
76_S	102_A	0.813	1.00
28_L	83_M	0.812	1.00
173_K	180_D	0.802	1.00
28_L	91_A	0.792	1.00
81_L	85_S	0.776	1.00
91_A	113_S	0.770	1.00
33_A	98_M	0.770	1.00
25_S	54_Y	0.766	1.00
74_S	77_E	0.764	1.00
73_I	105_E	0.763	1.00
57_I	86_L	0.760	1.00
47_D	50_S	0.756	1.00
61_L	98_M	0.752	1.00
137_K	164_K	0.749	1.00
29_L	40_W	0.736	1.00
147_R	172_G	0.734	1.00
77_E	81_L	0.733	1.00
16_I	67_S	0.731	1.00
42_E	47_D	0.729	1.00
60_D	65_G	0.725	1.00
26_L	54_Y	0.713	1.00
46_V	56_A	0.711	1.00
27_V	94_L	0.711	1.00
77_E	80_N	0.710	1.00
27_V	56_A	0.710	1.00
142_L	166_A	0.710	1.00
93_L	114_V	0.709	1.00
42_E	45_T	0.709	1.00
19_I	41_V	0.708	1.00
169_E	184_T	0.707	1.00
117_L	140_L	0.705	1.00
96_A	121_G	0.705	1.00
81_L	84_N	0.705	1.00
120_V	177_C	0.701	1.00
76_S	109_K	0.700	1.00
121_G	177_C	0.691	1.00
107_S	114_V	0.690	1.00
38_R	41_V	0.685	1.00
26_L	91_A	0.678	1.00
95_G	100_G	0.675	1.00
75_L	98_M	0.674	1.00
146_S	153_K	0.673	1.00
108_L	135_L	0.666	1.00
116_G	192_F	0.660	1.00
156_Y	168_L	0.659	1.00
155_N	158_L	0.657	1.00
107_S	138_I	0.657	1.00
54_Y	190_V	0.653	1.00
186_N	190_V	0.649	1.00
80_N	83_M	0.649	1.00
101_K	123_V	0.643	1.00
17_H	67_S	0.643	1.00
83_M	106_F	0.640	1.00
31_H	59_V	0.636	1.00
21_S	47_D	0.635	1.00
47_D	51_S	0.634	1.00
116_G	193_L	0.631	1.00
121_G	144_W	0.631	1.00
172_G	181_D	0.625	1.00
27_V	193_L	0.625	1.00
25_S	116_G	0.625	1.00
28_L	79_I	0.623	1.00
61_L	75_L	0.620	1.00
136_N	140_L	0.620	1.00
94_L	118_V	0.620	1.00
45_T	185_F	0.614	1.00
51_S	190_V	0.614	1.00
182_P	186_N	0.613	1.00
37_A	59_V	0.613	1.00
45_T	48_S	0.609	1.00
28_L	93_L	0.603	1.00
121_G	145_G	0.601	1.00
187_E	190_V	0.600	1.00
16_I	62_P	0.600	1.00
96_A	120_V	0.596	1.00
60_D	66_S	0.594	1.00
87_G	90_K	0.592	1.00
93_L	106_F	0.592	1.00
171_V	181_D	0.590	1.00
27_V	92_I	0.586	1.00
154_R	157_K	0.583	1.00
46_V	50_S	0.581	1.00
53_G	56_A	0.581	1.00
114_V	138_I	0.581	1.00
61_L	64_F	0.580	1.00
118_V	192_F	0.577	1.00
118_V	193_L	0.574	1.00
35_F	176_A	0.573	1.00
104_L	124_G	0.572	1.00
95_G	99_G	0.571	1.00
23_D	55_K	0.566	1.00
91_A	115_S	0.565	1.00
42_E	46_V	0.562	1.00
145_G	177_C	0.555	1.00
20_E	86_L	0.554	1.00
57_I	88_I	0.552	1.00
73_I	77_E	0.552	1.00
89_D	113_S	0.550	1.00
41_V	47_D	0.549	1.00
136_N	163_V	0.545	1.00
12_K	77_E	0.543	1.00
143_I	185_F	0.542	1.00
62_P	75_L	0.539	1.00
39_T	96_A	0.538	1.00
76_S	106_F	0.537	1.00
177_C	185_F	0.535	1.00
97_S	176_A	0.535	1.00
34_R	98_M	0.534	1.00
119_L	142_L	0.534	1.00
74_S	78_F	0.533	1.00
19_I	38_R	0.528	1.00
189_I	193_L	0.521	1.00
12_K	74_S	0.518	1.00
148_D	175_H	0.517	1.00
24_G	54_Y	0.517	1.00
19_I	58_S	0.515	1.00
40_W	46_V	0.512	1.00
167_K	191_N	0.512	1.00
78_F	81_L	0.512	1.00
33_A	64_F	0.508	1.00
35_F	179_L	0.505	1.00
156_Y	160_L	0.505	1.00
29_L	49_I	0.503	1.00
116_G	141_L	0.503	1.00
27_V	49_I	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4inzA	1	0.9543	100	0.134	Contact Map
3oosA	1	0.9594	100	0.152	Contact Map
1ehyA	1	0.9594	100	0.152	Contact Map
4lxhA	2	0.9797	100	0.171	Contact Map
2pujA	4	0.9898	100	0.172	Contact Map
3r40A	2	0.9492	100	0.18	Contact Map
2xuaA	2	0.9492	100	0.18	Contact Map
4opmA	2	0.9848	100	0.182	Contact Map
1iupA	2	0.9695	100	0.183	Contact Map
3om8A	4	0.9695	100	0.184	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0129 seconds.