GREMLIN Database
Q97WE1 - Uncharacterized protein
UniProt: Q97WE1 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 609 (507)
Sequences: 1223 (993)
Seq/√Len: 44.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
82_L124_C6.1871.00
270_D274_P4.0701.00
274_P278_S3.8111.00
208_F593_I3.6151.00
266_G270_D3.5131.00
195_M528_V3.2981.00
196_L545_A3.1011.00
69_L151_V3.0731.00
271_I274_P2.9781.00
443_D447_S2.9371.00
581_L591_I2.9031.00
298_F302_V2.8971.00
577_G595_A2.7801.00
233_G443_D2.7291.00
270_D273_Y2.7131.00
275_I278_S2.6821.00
272_I278_S2.5921.00
549_I579_A2.5651.00
290_A294_T2.5601.00
514_A538_S2.5501.00
171_R594_K2.5411.00
267_I270_D2.5321.00
278_S282_K2.5121.00
279_W282_K2.4901.00
211_D215_G2.4531.00
533_N583_T2.4111.00
267_I273_Y2.3361.00
266_G272_I2.3201.00
384_L388_F2.2651.00
533_N557_V2.2561.00
265_K268_N2.2551.00
69_L124_C2.2481.00
294_T302_V2.2211.00
268_N273_Y2.2151.00
174_F183_R2.2091.00
69_L82_L2.2061.00
263_I268_N2.1641.00
270_D278_S2.1521.00
270_D275_I2.1351.00
197_I209_I2.1221.00
265_K270_D2.1141.00
208_F551_F2.0990.99
280_V283_Y2.0930.99
268_N271_I2.0910.99
282_K286_G2.0750.99
207_S577_G2.0370.99
493_F513_I2.0260.99
297_Y301_F2.0190.99
268_N274_P2.0120.99
39_K123_R1.9580.99
171_R183_R1.9510.99
384_L387_Q1.9460.99
536_D540_I1.9120.99
487_D515_T1.9120.99
280_V285_D1.9000.99
263_I270_D1.9000.99
263_I266_G1.8820.99
380_N383_D1.8760.99
290_A302_V1.8750.99
202_G521_R1.8730.99
230_D522_R1.8640.99
280_V284_L1.8620.99
273_Y278_S1.8550.99
359_F362_Q1.8200.98
294_T298_F1.8190.98
274_P282_K1.8170.98
267_I271_I1.8060.98
42_E124_C1.8020.98
462_L484_I1.7940.98
290_A297_Y1.7800.98
543_Q557_V1.7790.98
232_T530_A1.7760.98
275_I280_V1.7490.98
299_D303_K1.7380.98
292_S297_Y1.7150.98
543_Q583_T1.7120.98
517_M527_F1.7050.98
230_D489_A1.6970.98
268_N272_I1.6870.98
294_T297_Y1.6750.97
267_I272_I1.6640.97
533_N540_I1.6540.97
490_H534_P1.6490.97
196_L487_D1.6370.97
523_R544_L1.6350.97
266_G273_Y1.6340.97
335_Q343_F1.6330.97
519_L522_R1.6300.97
557_V583_T1.6300.97
276_S280_V1.5970.97
462_L516_M1.5960.97
208_F549_I1.5960.97
204_G489_A1.5790.96
227_F442_F1.5770.96
204_G230_D1.5760.96
145_L589_G1.5720.96
275_I282_K1.5600.96
272_I275_I1.5570.96
304_P311_N1.5490.96
194_H552_R1.5480.96
487_D536_D1.5460.96
232_T551_F1.5260.95
353_H357_P1.5250.95
36_I40_L1.5200.95
287_A290_A1.5200.95
265_K274_P1.5150.95
381_L384_L1.5110.95
519_L557_V1.5020.95
406_I409_G1.5010.95
354_K362_Q1.5000.95
263_I274_P1.4950.95
152_I158_V1.4890.95
290_A296_M1.4880.95
339_Y342_Y1.4860.95
145_L513_I1.4810.95
360_T363_A1.4800.95
278_S283_Y1.4760.95
550_I571_L1.4750.95
290_A295_K1.4390.94
297_Y300_M1.4380.94
336_V339_Y1.4360.94
346_K350_T1.4320.94
483_V528_V1.4280.94
209_I530_A1.4270.94
276_S284_L1.4230.93
293_I296_M1.4190.93
292_S298_F1.4050.93
339_Y343_F1.3940.93
490_H519_L1.3920.93
266_G271_I1.3890.93
532_H544_L1.3860.92
234_D522_R1.3770.92
342_Y348_V1.3770.92
514_A540_I1.3630.92
266_G274_P1.3540.92
419_F422_G1.3530.92
519_L543_Q1.3510.92
270_D282_K1.3480.91
384_L389_N1.3480.91
522_R544_L1.3420.91
145_L493_F1.3410.91
207_S596_P1.3410.91
544_L557_V1.3400.91
549_I581_L1.3380.91
487_D530_A1.3370.91
300_M303_K1.3350.91
275_I279_W1.3310.91
399_H402_T1.3180.90
232_T522_R1.3140.90
279_W284_L1.3070.90
396_V400_K1.3030.90
128_T235_Y1.3010.90
523_R557_V1.2980.90
402_T405_N1.2950.90
336_V340_P1.2880.89
335_Q340_P1.2860.89
533_N544_L1.2760.89
265_K272_I1.2700.89
534_P544_L1.2650.89
336_V342_Y1.2610.88
297_Y302_V1.2570.88
334_S337_T1.2360.87
450_D558_A1.2340.87
297_Y306_L1.2320.87
204_G490_H1.2320.87
426_F430_K1.2310.87
302_V305_I1.2260.87
399_H405_N1.2250.87
430_K433_K1.2250.87
340_P343_F1.2250.87
263_I267_I1.2250.87
443_D526_G1.2200.87
352_L358_Y1.2130.86
306_L313_G1.2090.86
140_G538_S1.2030.86
302_V306_L1.1890.85
290_A293_I1.1840.85
269_V274_P1.1820.85
337_T348_V1.1740.84
418_L423_V1.1730.84
265_K271_I1.1720.84
230_D490_H1.1670.84
230_D235_Y1.1670.84
32_V157_E1.1640.84
345_F348_V1.1580.84
556_E559_E1.1570.84
272_I282_K1.1550.84
268_N278_S1.1530.83
537_L545_A1.1530.83
358_Y361_E1.1500.83
282_K285_D1.1480.83
514_A531_T1.1460.83
285_D292_S1.1460.83
390_E393_L1.1340.82
376_K379_A1.1340.82
531_T583_T1.1320.82
279_W285_D1.1300.82
84_V119_N1.1280.82
336_V341_F1.1260.82
70_G79_F1.1220.82
235_Y522_R1.1210.82
519_L544_L1.1200.82
418_L421_V1.1150.81
533_N543_Q1.1140.81
583_T589_G1.1130.81
416_T419_F1.1120.81
336_V343_F1.1120.81
493_F537_L1.1120.81
341_F345_F1.1110.81
274_P280_V1.1060.81
50_T53_P1.1050.81
204_G235_Y1.1030.81
282_K290_A1.1020.80
519_L532_H1.1000.80
310_N313_G1.0990.80
34_R41_D1.0970.80
373_K376_K1.0970.80
292_S301_F1.0970.80
524_K552_R1.0960.80
267_I278_S1.0960.80
271_I275_I1.0940.80
518_R577_G1.0920.80
268_N275_I1.0890.80
386_D389_N1.0880.80
232_T557_V1.0840.79
204_G531_T1.0830.79
174_F181_K1.0820.79
336_V344_R1.0790.79
175_L184_V1.0670.78
186_T581_L1.0660.78
227_F465_L1.0640.78
232_T533_N1.0630.78
194_H521_R1.0630.78
519_L533_N1.0530.77
271_I282_K1.0530.77
270_D276_S1.0520.77
157_E465_L1.0510.77
173_G581_L1.0480.77
66_G547_T1.0480.77
465_L482_N1.0430.77
199_G536_D1.0390.76
285_D288_K1.0380.76
470_E530_A1.0380.76
69_L240_L1.0360.76
519_L523_R1.0340.76
215_G594_K1.0290.76
231_A580_Y1.0280.76
63_G231_A1.0270.76
70_G158_V1.0240.75
571_L579_A1.0200.75
391_N395_G1.0170.75
381_L387_Q1.0150.75
282_K292_S1.0130.75
232_T519_L1.0130.75
592_K595_A1.0120.74
577_G596_P1.0100.74
230_D531_T1.0080.74
295_K299_D1.0050.74
519_L583_T1.0050.74
540_I554_K1.0010.74
285_D297_Y1.0000.74
490_H533_N0.9990.74
288_K292_S0.9970.73
194_H520_G0.9950.73
426_F429_G0.9930.73
276_S282_K0.9920.73
494_P537_L0.9920.73
275_I284_L0.9920.73
537_L596_P0.9900.73
238_I487_D0.9870.73
141_A523_R0.9860.73
309_L312_K0.9860.73
283_Y286_G0.9810.72
522_R532_H0.9800.72
270_D280_V0.9770.72
346_K349_K0.9750.72
213_I528_V0.9720.71
380_N384_L0.9710.71
214_A597_V0.9650.71
234_D544_L0.9590.70
204_G522_R0.9540.70
361_E371_I0.9510.70
274_P283_Y0.9500.70
281_K284_L0.9500.70
352_L355_L0.9470.69
28_L31_K0.9460.69
264_V272_I0.9460.69
253_V256_F0.9460.69
289_S292_S0.9450.69
145_L234_D0.9340.68
529_F557_V0.9330.68
194_H524_K0.9290.68
343_F347_D0.9280.68
420_D424_E0.9280.68
128_T520_G0.9260.68
288_K294_T0.9230.67
271_I278_S0.9230.67
338_V341_F0.9220.67
231_A547_T0.9210.67
214_A596_P0.9150.67
356_N359_F0.9120.67
159_I173_G0.9120.67
71_A82_L0.9090.66
354_K358_Y0.9090.66
246_D249_V0.9090.66
234_D518_R0.9090.66
126_M576_N0.9070.66
305_I311_N0.9060.66
359_F363_A0.9050.66
392_S395_G0.9050.66
466_F515_T0.9050.66
533_N554_K0.9050.66
269_V273_Y0.9040.66
196_L583_T0.9040.66
270_D286_G0.9040.66
427_P431_I0.9030.66
82_L126_M0.9010.66
544_L583_T0.8990.65
210_K596_P0.8990.65
344_R347_D0.8990.65
206_T230_D0.8960.65
211_D555_S0.8930.65
294_T299_D0.8920.65
151_V162_S0.8920.65
200_T548_K0.8910.65
337_T340_P0.8830.64
427_P430_K0.8830.64
346_K357_P0.8810.64
297_Y305_I0.8800.64
296_M301_F0.8800.64
583_T588_E0.8800.64
267_I274_P0.8800.64
274_P279_W0.8790.64
307_N312_K0.8760.63
70_G154_P0.8760.63
259_L262_A0.8710.63
70_G152_I0.8690.63
262_A266_G0.8690.63
263_I271_I0.8690.63
197_I202_G0.8690.63
275_I285_D0.8680.63
395_G400_K0.8670.63
417_Q421_V0.8650.62
489_A557_V0.8630.62
193_F490_H0.8630.62
194_H202_G0.8610.62
389_N392_S0.8600.62
332_W339_Y0.8570.62
247_K250_M0.8570.62
485_I528_V0.8560.62
351_I355_L0.8520.61
289_S293_I0.8510.61
284_L288_K0.8500.61
295_K298_F0.8500.61
299_D306_L0.8490.61
301_F304_P0.8490.61
189_D531_T0.8490.61
232_T538_S0.8470.61
490_H518_R0.8440.60
187_S190_D0.8430.60
276_S285_D0.8430.60
349_K355_L0.8420.60
207_S454_Q0.8420.60
347_D380_N0.8410.60
198_L550_I0.8400.60
538_S547_T0.8390.60
263_I272_I0.8380.60
288_K299_D0.8380.60
274_P284_L0.8380.60
232_T578_V0.8370.60
285_D293_I0.8350.60
489_A522_R0.8340.60
486_I494_P0.8320.59
72_I152_I0.8300.59
201_T490_H0.8290.59
462_L513_I0.8280.59
335_Q339_Y0.8270.59
529_F583_T0.8270.59
335_Q341_F0.8230.58
490_H522_R0.8220.58
258_Q263_I0.8210.58
304_P308_H0.8190.58
296_M300_M0.8190.58
518_R547_T0.8170.58
339_Y344_R0.8160.58
188_L541_I0.8150.58
191_L201_T0.8130.58
191_L526_G0.8130.58
267_I275_I0.8120.57
69_L228_I0.8120.57
305_I309_L0.8080.57
346_K354_K0.8070.57
431_I435_S0.8050.57
350_T354_K0.8040.57
517_M541_I0.7980.56
557_V589_G0.7950.56
194_H546_N0.7950.56
207_S214_A0.7950.56
66_G78_Y0.7890.55
235_Y489_A0.7880.55
189_D214_A0.7870.55
298_F306_L0.7870.55
352_L359_F0.7840.55
554_K583_T0.7840.55
575_R578_V0.7830.55
84_V161_R0.7830.55
145_L489_A0.7820.55
379_A384_L0.7820.55
228_I279_W0.7820.55
400_K404_E0.7810.55
128_T206_T0.7800.54
203_A540_I0.7790.54
204_G534_P0.7790.54
294_T305_I0.7760.54
210_K583_T0.7760.54
158_V550_I0.7750.54
232_T531_T0.7740.54
344_R348_V0.7730.54
267_I279_W0.7710.54
519_L529_F0.7690.53
383_D387_Q0.7680.53
391_N394_E0.7680.53
353_H360_T0.7670.53
288_K295_K0.7660.53
466_F470_E0.7650.53
531_T540_I0.7630.53
356_N362_Q0.7610.53
388_F391_N0.7610.53
285_D294_T0.7560.52
200_T531_T0.7550.52
418_L422_G0.7510.52
518_R536_D0.7500.52
276_S290_A0.7490.51
396_V404_E0.7490.51
519_L534_P0.7470.51
208_F211_D0.7470.51
540_I583_T0.7460.51
272_I276_S0.7460.51
198_L545_A0.7450.51
350_T363_A0.7440.51
230_D544_L0.7430.51
574_E589_G0.7410.51
213_I228_I0.7410.51
492_F536_D0.7410.51
206_T522_R0.7410.51
210_K533_N0.7390.50
284_L292_S0.7380.50
286_G292_S0.7370.50
518_R522_R0.7370.50
334_S344_R0.7350.50
551_F579_A0.7350.50
230_D534_P0.7340.50
230_D583_T0.7330.50
232_T491_R0.7320.50
272_I280_V0.7310.50
351_I354_K0.7290.50
291_G294_T0.7280.49
232_T583_T0.7270.49
377_D380_N0.7260.49
276_S279_W0.7220.49
397_E402_T0.7220.49
338_V348_V0.7210.49
442_F581_L0.7200.49
491_R519_L0.7190.49
193_F546_N0.7170.48
381_L386_D0.7170.48
277_K283_Y0.7160.48
140_G463_D0.7120.48
128_T522_R0.7110.48
354_K361_E0.7090.48
267_I307_N0.7090.48
394_E397_E0.7070.47
211_D594_K0.7070.47
596_P599_P0.7060.47
66_G528_V0.7060.47
354_K359_F0.7050.47
309_L313_G0.7050.47
491_R518_R0.7050.47
522_R583_T0.7050.47
428_L431_I0.7030.47
378_I381_L0.6990.47
459_Y492_F0.6970.46
198_L551_F0.6960.46
49_V54_N0.6920.46
481_R544_L0.6920.46
335_Q338_V0.6920.46
206_T519_L0.6910.46
518_R531_T0.6910.46
232_T535_N0.6890.46
428_L435_S0.6870.45
531_T585_W0.6870.45
271_I279_W0.6870.45
533_N574_E0.6860.45
284_L290_A0.6860.45
387_Q392_S0.6840.45
206_T210_K0.6830.45
229_L547_T0.6830.45
466_F536_D0.6820.45
344_R349_K0.6820.45
30_G199_G0.6810.45
289_S294_T0.6810.45
356_N361_E0.6800.45
278_S286_G0.6780.45
199_G490_H0.6780.45
340_P344_R0.6760.44
530_A551_F0.6740.44
68_F566_T0.6730.44
285_D290_A0.6730.44
578_V592_K0.6690.44
276_S294_T0.6680.44
233_G552_R0.6680.44
278_S281_K0.6660.43
193_F542_I0.6650.43
266_G278_S0.6650.43
191_L514_A0.6650.43
214_A599_P0.6650.43
487_D510_A0.6650.43
235_Y589_G0.6620.43
92_A95_L0.6610.43
301_F305_I0.6600.43
489_A534_P0.6590.43
200_T540_I0.6580.43
268_N277_K0.6580.43
401_S405_N0.6540.42
520_G531_T0.6540.42
201_T204_G0.6540.42
497_K537_L0.6540.42
128_T533_N0.6540.42
201_T553_I0.6530.42
523_R533_N0.6510.42
333_S337_T0.6500.42
230_D518_R0.6480.42
195_M441_I0.6470.42
529_F544_L0.6470.42
287_A291_G0.6460.42
550_I576_N0.6460.42
353_H362_Q0.6440.41
516_M574_E0.6440.41
384_L430_K0.6430.41
80_V444_L0.6430.41
341_F348_V0.6420.41
387_Q391_N0.6420.41
209_I548_K0.6410.41
234_D553_I0.6400.41
347_D351_I0.6390.41
276_S281_K0.6380.41
224_S583_T0.6380.41
126_M129_K0.6370.41
195_M487_D0.6360.41
274_P292_S0.6360.41
540_I544_L0.6350.41
294_T306_L0.6330.40
274_P277_K0.6330.40
523_R543_Q0.6330.40
126_M142_D0.6320.40
200_T551_F0.6300.40
383_D388_F0.6300.40
65_I187_S0.6290.40
173_G576_N0.6270.40
358_Y363_A0.6260.40
293_I298_F0.6240.40
67_I196_L0.6230.39
198_L549_I0.6220.39
145_L202_G0.6210.39
70_G83_R0.6210.39
196_L515_T0.6210.39
343_F348_V0.6200.39
279_W286_G0.6200.39
440_L593_I0.6180.39
487_D560_A0.6180.39
283_Y410_L0.6180.39
307_N311_N0.6170.39
343_F356_N0.6170.39
291_G295_K0.6170.39
580_Y591_I0.6160.39
254_E258_Q0.6150.39
350_T434_D0.6140.39
429_G433_K0.6130.39
225_K440_L0.6120.38
256_F265_K0.6120.38
409_G456_I0.6110.38
210_K531_T0.6090.38
203_A454_Q0.6090.38
549_I593_I0.6080.38
156_A172_L0.6070.38
534_P571_L0.6060.38
533_N552_R0.6060.38
493_F536_D0.6050.38
447_S535_N0.6050.38
522_R557_V0.6050.38
211_D531_T0.6040.38
427_P435_S0.6040.38
268_N280_V0.6040.38
532_H557_V0.6040.38
340_P345_F0.6030.38
287_A297_Y0.6000.37
49_V57_Y0.6000.37
200_T536_D0.5990.37
155_K158_V0.5990.37
434_D441_I0.5980.37
419_F423_V0.5970.37
541_I549_I0.5970.37
305_I312_K0.5960.37
235_Y490_H0.5950.37
140_G199_G0.5930.37
442_F462_L0.5920.37
57_Y84_V0.5920.37
489_A531_T0.5920.37
198_L553_I0.5910.37
50_T54_N0.5910.37
231_A596_P0.5890.36
82_L493_F0.5870.36
34_R38_N0.5860.36
225_K536_D0.5860.36
449_L458_T0.5860.36
145_L486_I0.5860.36
347_D357_P0.5840.36
356_N360_T0.5830.36
516_M543_Q0.5830.36
540_I552_R0.5820.36
382_D386_D0.5810.36
292_S295_K0.5810.36
397_E400_K0.5810.36
272_I279_W0.5810.36
335_Q344_R0.5800.36
300_M311_N0.5790.36
65_I544_L0.5780.35
205_K488_E0.5780.35
193_F481_R0.5770.35
292_S299_D0.5770.35
457_L461_F0.5740.35
526_G561_L0.5740.35
202_G589_G0.5740.35
552_R574_E0.5740.35
406_I410_L0.5740.35
31_K148_Q0.5730.35
529_F543_Q0.5730.35
338_V347_D0.5720.35
277_K285_D0.5710.35
516_M533_N0.5700.35
263_I273_Y0.5700.35
334_S341_F0.5700.35
282_K287_A0.5690.35
286_G289_S0.5690.35
311_N350_T0.5680.35
302_V310_N0.5680.35
163_L182_V0.5640.34
225_K552_R0.5630.34
142_D159_I0.5620.34
196_L489_A0.5620.34
284_L294_T0.5620.34
348_V357_P0.5610.34
522_R529_F0.5580.34
200_T513_I0.5570.34
232_T544_L0.5570.34
202_G557_V0.5560.34
186_T220_N0.5560.34
234_D519_L0.5560.34
342_Y356_N0.5560.34
243_D457_L0.5550.33
60_P84_V0.5550.33
519_L554_K0.5540.33
257_T260_Y0.5540.33
396_V399_H0.5530.33
514_A533_N0.5520.33
192_N551_F0.5520.33
227_F494_P0.5510.33
286_G293_I0.5490.33
540_I557_V0.5490.33
192_N227_F0.5490.33
199_G487_D0.5490.33
353_H358_Y0.5480.33
297_Y303_K0.5470.33
213_I312_K0.5470.33
417_Q427_P0.5460.33
29_V34_R0.5450.33
201_T235_Y0.5450.33
158_V542_I0.5450.33
263_I302_V0.5450.33
128_T136_S0.5450.33
151_V485_I0.5440.32
213_I485_I0.5440.32
160_E404_E0.5440.32
333_S346_K0.5440.32
123_R411_Y0.5440.32
142_D199_G0.5430.32
232_T584_P0.5420.32
308_H312_K0.5410.32
450_D463_D0.5390.32
335_Q342_Y0.5370.32
458_T466_F0.5370.32
292_S409_G0.5360.32
234_D532_H0.5350.32
196_L519_L0.5340.32
203_A551_F0.5340.32
492_F545_A0.5340.32
200_T523_R0.5330.32
524_K557_V0.5330.32
111_D186_T0.5330.32
396_V402_T0.5330.32
517_M522_R0.5330.32
523_R532_H0.5320.31
378_I386_D0.5310.31
265_K269_V0.5310.31
198_L552_R0.5300.31
534_P583_T0.5300.31
393_L396_V0.5290.31
468_F523_R0.5290.31
466_F520_G0.5290.31
353_H359_F0.5290.31
235_Y487_D0.5290.31
388_F410_L0.5290.31
207_S211_D0.5280.31
249_V363_A0.5280.31
522_R533_N0.5280.31
410_L484_I0.5280.31
577_G594_K0.5280.31
509_V557_V0.5270.31
30_G57_Y0.5270.31
193_F534_P0.5260.31
140_G144_I0.5250.31
336_V345_F0.5250.31
196_L230_D0.5250.31
519_L540_I0.5230.31
296_M302_V0.5230.31
490_H531_T0.5230.31
268_N442_F0.5230.31
531_T546_N0.5210.31
77_L461_F0.5210.31
267_I276_S0.5200.30
344_R350_T0.5200.30
340_P349_K0.5190.30
140_G554_K0.5180.30
229_L580_Y0.5180.30
342_Y345_F0.5170.30
352_L356_N0.5170.30
524_K533_N0.5160.30
522_R531_T0.5160.30
335_Q347_D0.5150.30
339_Y345_F0.5150.30
493_F545_A0.5130.30
355_L359_F0.5130.30
144_I491_R0.5130.30
567_E589_G0.5120.30
299_D304_P0.5120.30
490_H583_T0.5110.30
273_Y276_S0.5110.30
401_S404_E0.5100.30
357_P430_K0.5100.30
136_S492_F0.5100.30
467_E471_R0.5090.30
478_V581_L0.5080.30
36_I41_D0.5070.29
339_Y346_K0.5060.29
285_D302_V0.5060.29
409_G536_D0.5050.29
63_G84_V0.5030.29
453_S484_I0.5010.29
466_F535_N0.5010.29
230_D519_L0.5000.29
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4d2iA 3 0.7406 100 0.507 Contact Map
4ag6A 2 0.5862 100 0.695 Contact Map
1e9rA 3 0.6305 100 0.746 Contact Map
2iusA 1 0.5895 99.7 0.855 Contact Map
2iutA 2 0.6256 99.2 0.891 Contact Map
4lyaA 1 0.4269 99.2 0.893 Contact Map
4nh0A 1 0.4122 99.1 0.898 Contact Map
2r2aA 1 0.2972 98.1 0.925 Contact Map
4kfuA 1 0.3333 97.4 0.936 Contact Map
3qf7A 2 0.514 96.6 0.943 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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