Q97WB6 - SULSO - GREMLIN Contacts

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Q97WB6 - Flagella-related protein H, putative (FlaH)

UniProt:	Q97WB6	Sequences: MEGYTVIIKTGNEDLDRRLSGLPFPALIMIEGDHGTGKSVLSAQFCYGLLIGGKKGYIITTEQTSKDYLKKMKDVKIDLIPFFLKGVLGIAPLNTNKFNWNSRLANKILEIIIDFIKRRKNMDFIIIDSLSIVATFAEIKQILQFMKDARVLVDLGKLILFTVHPDVFNEELKSRITSIVDVYFKLSATSIGGRRIKVLERIKTIGGIQGADAISFDIDPALGIKVVPLSLSRA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	234 (195)
Sequences:	8459 (4869)
Seq/√Len:	348.7

ECOLI - DNAB RECA
BACSU - YORI DNAC RECA
HALSA - Q9HP98 Q9HNX8 RADB GVPD2 Q9HQY2 RADA
SULSO - Q97WB6 Y1861 Q97VZ8 RADA

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
54_K	123_D	3.828	1.00
168_F	171_E	3.769	1.00
55_K	123_D	3.267	1.00
9_K	16_D	3.144	1.00
49_L	124_F	2.783	1.00
46_C	126_I	2.591	1.00
10_T	22_L	2.539	1.00
28_I	182_V	2.502	1.00
24_F	156_G	2.372	1.00
46_C	56_G	2.321	1.00
42_S	162_T	2.294	1.00
185_K	202_I	2.283	1.00
27_L	150_R	2.206	1.00
11_G	16_D	2.202	1.00
29_M	180_V	2.134	1.00
42_S	126_I	2.076	1.00
26_A	67_D	2.039	1.00
112_I	125_I	2.029	1.00
146_M	179_I	2.006	1.00
57_Y	115_F	1.914	1.00
24_F	123_D	1.900	1.00
117_K	155_L	1.851	1.00
15_L	184_F	1.847	1.00
43_A	72_M	1.827	1.00
116_I	125_I	1.722	1.00
14_D	17_R	1.718	1.00
48_G	52_G	1.715	1.00
19_L	182_V	1.715	1.00
125_I	159_I	1.684	1.00
32_G	186_L	1.682	1.00
78_D	81_P	1.662	1.00
115_F	118_R	1.619	1.00
153_V	159_I	1.614	1.00
204_T	207_G	1.587	1.00
48_G	51_I	1.561	1.00
35_G	206_G	1.560	1.00
46_C	58_I	1.558	1.00
152_L	155_L	1.543	1.00
55_K	120_K	1.531	1.00
47_Y	51_I	1.516	1.00
114_D	118_R	1.469	1.00
182_V	204_T	1.457	1.00
119_R	122_M	1.451	1.00
124_F	160_L	1.432	1.00
10_T	16_D	1.413	1.00
125_I	157_K	1.410	1.00
115_F	119_R	1.400	1.00
6_V	24_F	1.398	1.00
49_L	54_K	1.377	1.00
18_R	210_G	1.370	1.00
15_L	19_L	1.368	1.00
190_S	195_R	1.358	1.00
41_L	45_F	1.354	1.00
57_Y	122_M	1.329	1.00
126_I	160_L	1.326	1.00
47_Y	75_V	1.309	1.00
18_R	201_R	1.306	1.00
13_E	17_R	1.290	1.00
32_G	36_T	1.283	1.00
124_F	158_L	1.260	1.00
36_T	191_I	1.251	1.00
64_T	67_D	1.248	1.00
146_M	161_F	1.245	1.00
27_L	146_M	1.224	1.00
116_I	122_M	1.221	1.00
184_F	199_L	1.214	1.00
22_L	160_L	1.201	1.00
35_G	203_K	1.194	1.00
105_A	148_D	1.194	1.00
198_V	213_A	1.165	1.00
43_A	68_Y	1.149	1.00
54_K	124_F	1.137	1.00
50_L	88_L	1.120	1.00
137_A	140_K	1.118	1.00
131_S	163_V	1.117	1.00
186_L	199_L	1.109	1.00
172_L	175_R	1.102	1.00
6_V	23_P	1.096	1.00
49_L	56_G	1.074	1.00
60_T	68_Y	1.072	1.00
63_Q	205_I	1.067	1.00
65_S	69_L	1.067	1.00
61_T	132_I	1.064	1.00
164_H	178_S	1.059	1.00
69_L	73_K	1.052	1.00
116_I	120_K	1.048	1.00
22_L	45_F	1.047	1.00
25_P	156_G	1.044	1.00
45_F	49_L	1.044	1.00
12_N	44_Q	1.043	1.00
24_F	54_K	1.040	1.00
36_T	192_G	1.036	1.00
89_G	92_P	1.031	1.00
204_T	208_I	1.031	1.00
28_I	158_L	1.025	1.00
89_G	119_R	1.017	1.00
152_L	157_K	1.014	1.00
58_I	126_I	1.009	1.00
148_D	151_V	1.008	1.00
112_I	155_L	1.007	1.00
120_K	123_D	1.001	1.00
50_L	56_G	0.992	1.00
39_S	68_Y	0.990	1.00
108_I	133_V	0.984	1.00
43_A	58_I	0.983	1.00
138_E	141_Q	0.982	1.00
108_I	136_F	0.977	1.00
30_I	160_L	0.976	1.00
57_Y	125_I	0.972	1.00
139_I	143_L	0.971	1.00
86_G	92_P	0.969	1.00
130_L	176_I	0.966	1.00
59_I	125_I	0.964	1.00
41_L	199_L	0.958	1.00
46_C	50_L	0.953	1.00
23_P	26_A	0.952	1.00
147_K	151_V	0.951	1.00
27_L	161_F	0.948	1.00
81_P	85_K	0.942	1.00
180_V	183_Y	0.938	1.00
62_E	164_H	0.935	1.00
40_V	71_K	0.934	1.00
18_R	214_I	0.931	1.00
138_E	173_K	0.928	1.00
187_S	200_E	0.928	1.00
127_I	149_A	0.912	1.00
12_N	16_D	0.910	1.00
33_D	36_T	0.906	1.00
172_L	178_S	0.906	1.00
111_I	114_D	0.900	1.00
23_P	204_T	0.899	1.00
5_T	66_K	0.892	1.00
116_I	156_G	0.881	1.00
112_I	116_I	0.877	1.00
45_F	124_F	0.877	1.00
27_L	149_A	0.868	1.00
79_L	82_F	0.857	1.00
198_V	211_A	0.854	1.00
15_L	201_R	0.851	1.00
7_I	207_G	0.848	1.00
31_E	185_K	0.848	1.00
44_Q	48_G	0.842	1.00
113_I	152_L	0.841	1.00
55_K	87_V	0.838	1.00
129_S	162_T	0.835	1.00
113_I	148_D	0.830	1.00
42_S	58_I	0.823	1.00
186_L	197_K	0.822	1.00
32_G	38_K	0.819	1.00
166_D	169_N	0.818	1.00
45_F	48_G	0.816	1.00
144_Q	148_D	0.814	1.00
30_I	184_F	0.814	1.00
39_S	43_A	0.804	1.00
22_L	124_F	0.804	1.00
35_G	209_Q	0.802	1.00
177_T	183_Y	0.802	1.00
71_K	206_G	0.798	1.00
200_E	211_A	0.792	1.00
56_G	124_F	0.792	1.00
56_G	126_I	0.790	1.00
86_G	89_G	0.790	1.00
76_K	79_L	0.786	1.00
87_V	92_P	0.784	1.00
152_L	159_I	0.784	1.00
150_R	153_V	0.783	1.00
184_F	201_R	0.778	1.00
62_E	205_I	0.777	1.00
57_Y	112_I	0.774	1.00
108_I	111_I	0.770	1.00
22_L	158_L	0.770	1.00
26_A	206_G	0.757	1.00
196_I	215_S	0.757	1.00
106_N	111_I	0.753	1.00
18_R	204_T	0.752	1.00
143_L	147_K	0.746	1.00
120_K	155_L	0.739	1.00
22_L	28_I	0.737	1.00
106_N	148_D	0.732	0.99
109_L	148_D	0.730	0.99
28_I	184_F	0.730	0.99
42_S	160_L	0.729	0.99
30_I	41_L	0.728	0.99
44_Q	47_Y	0.728	0.99
27_L	159_I	0.712	0.99
25_P	64_T	0.712	0.99
29_M	176_I	0.710	0.99
12_N	214_I	0.708	0.99
55_K	119_R	0.708	0.99
78_D	82_F	0.708	0.99
77_I	82_F	0.701	0.99
34_H	180_V	0.700	0.99
16_D	48_G	0.695	0.99
42_S	45_F	0.695	0.99
116_I	119_R	0.695	0.99
151_V	154_D	0.692	0.99
108_I	112_I	0.692	0.99
55_K	122_M	0.685	0.99
9_K	15_L	0.685	0.99
20_S	23_P	0.682	0.99
123_D	158_L	0.682	0.99
45_F	160_L	0.679	0.99
60_T	163_V	0.676	0.99
67_D	206_G	0.676	0.99
50_L	82_F	0.675	0.99
41_L	186_L	0.673	0.99
189_T	198_V	0.671	0.99
14_D	214_I	0.669	0.99
31_E	202_I	0.669	0.99
74_D	82_F	0.666	0.99
19_L	184_F	0.665	0.99
12_N	48_G	0.664	0.99
36_T	197_K	0.659	0.99
8_I	49_L	0.654	0.99
111_I	115_F	0.649	0.99
197_K	211_A	0.647	0.99
116_I	152_L	0.647	0.99
33_D	170_E	0.642	0.99
109_L	145_F	0.641	0.99
187_S	192_G	0.641	0.99
188_A	197_K	0.635	0.99
59_I	112_I	0.634	0.99
19_L	22_L	0.633	0.99
38_K	128_D	0.633	0.99
137_A	141_Q	0.632	0.99
70_K	73_K	0.629	0.98
44_Q	75_V	0.629	0.98
202_I	209_Q	0.629	0.98
86_G	90_I	0.626	0.98
40_V	44_Q	0.626	0.98
112_I	115_F	0.626	0.98
47_Y	78_D	0.625	0.98
10_T	15_L	0.621	0.98
24_F	158_L	0.620	0.98
144_Q	147_K	0.620	0.98
188_A	192_G	0.618	0.98
164_H	167_V	0.616	0.98
26_A	181_D	0.602	0.98
146_M	176_I	0.599	0.98
116_I	123_D	0.598	0.98
113_I	116_I	0.598	0.98
187_S	198_V	0.595	0.98
196_I	213_A	0.593	0.98
190_S	197_K	0.588	0.98
29_M	183_Y	0.588	0.98
7_I	23_P	0.588	0.98
31_E	165_P	0.587	0.98
192_G	195_R	0.586	0.98
142_I	147_K	0.577	0.97
77_I	81_P	0.576	0.97
210_G	214_I	0.575	0.97
136_F	144_Q	0.575	0.97
26_A	182_V	0.569	0.97
113_I	155_L	0.568	0.97
149_A	161_F	0.568	0.97
54_K	158_L	0.563	0.97
14_D	18_R	0.559	0.97
47_Y	77_I	0.558	0.97
7_I	204_T	0.551	0.96
130_L	145_F	0.550	0.96
108_I	116_I	0.550	0.96
127_I	133_V	0.549	0.96
11_G	48_G	0.546	0.96
29_M	161_F	0.539	0.96
189_T	196_I	0.537	0.96
11_G	45_F	0.536	0.96
40_V	75_V	0.536	0.96
112_I	122_M	0.534	0.96
189_T	192_G	0.533	0.96
208_I	211_A	0.532	0.96
8_I	158_L	0.530	0.96
20_S	208_I	0.529	0.96
8_I	54_K	0.527	0.95
47_Y	72_M	0.526	0.95
173_K	178_S	0.520	0.95
150_R	161_F	0.520	0.95
62_E	143_L	0.519	0.95
149_A	159_I	0.519	0.95
15_L	199_L	0.519	0.95
133_V	145_F	0.517	0.95
165_P	175_R	0.516	0.95
9_K	52_G	0.515	0.95
129_S	164_H	0.514	0.95
67_D	71_K	0.513	0.95
32_G	37_G	0.508	0.95
104_L	107_K	0.507	0.94
23_P	182_V	0.507	0.94
38_K	164_H	0.507	0.94
88_L	92_P	0.505	0.94
167_V	177_T	0.504	0.94
43_A	60_T	0.502	0.94
64_T	154_D	0.500	0.94

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3bs4A	1	0.9231	100	0.278	Contact Map
2dr3A	3	0.9701	100	0.346	Contact Map
3bgwA	3	0.9658	100	0.359	Contact Map
4nmnA	3	0.9615	100	0.382	Contact Map
2q6tA	1	0.9316	100	0.382	Contact Map
2cvhA	1	0.8761	100	0.394	Contact Map
1n0wA	1	0.8291	100	0.412	Contact Map
2w0mA	1	0.9103	100	0.418	Contact Map
2z43A	1	0.8547	100	0.427	Contact Map
3ldaA	1	0.8632	100	0.428	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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