GREMLIN Database
Q97WB6 - Flagella-related protein H, putative (FlaH)
UniProt: Q97WB6 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 234 (195)
Sequences: 8459 (4869)
Seq/√Len: 348.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
54_K123_D3.8281.00
168_F171_E3.7691.00
55_K123_D3.2671.00
9_K16_D3.1441.00
49_L124_F2.7831.00
46_C126_I2.5911.00
10_T22_L2.5391.00
28_I182_V2.5021.00
24_F156_G2.3721.00
46_C56_G2.3211.00
42_S162_T2.2941.00
185_K202_I2.2831.00
27_L150_R2.2061.00
11_G16_D2.2021.00
29_M180_V2.1341.00
42_S126_I2.0761.00
26_A67_D2.0391.00
112_I125_I2.0291.00
146_M179_I2.0061.00
57_Y115_F1.9141.00
24_F123_D1.9001.00
117_K155_L1.8511.00
15_L184_F1.8471.00
43_A72_M1.8271.00
116_I125_I1.7221.00
14_D17_R1.7181.00
48_G52_G1.7151.00
19_L182_V1.7151.00
125_I159_I1.6841.00
32_G186_L1.6821.00
78_D81_P1.6621.00
115_F118_R1.6191.00
153_V159_I1.6141.00
204_T207_G1.5871.00
48_G51_I1.5611.00
35_G206_G1.5601.00
46_C58_I1.5581.00
152_L155_L1.5431.00
55_K120_K1.5311.00
47_Y51_I1.5161.00
114_D118_R1.4691.00
182_V204_T1.4571.00
119_R122_M1.4511.00
124_F160_L1.4321.00
10_T16_D1.4131.00
125_I157_K1.4101.00
115_F119_R1.4001.00
6_V24_F1.3981.00
49_L54_K1.3771.00
18_R210_G1.3701.00
15_L19_L1.3681.00
190_S195_R1.3581.00
41_L45_F1.3541.00
57_Y122_M1.3291.00
126_I160_L1.3261.00
47_Y75_V1.3091.00
18_R201_R1.3061.00
13_E17_R1.2901.00
32_G36_T1.2831.00
124_F158_L1.2601.00
36_T191_I1.2511.00
64_T67_D1.2481.00
146_M161_F1.2451.00
27_L146_M1.2241.00
116_I122_M1.2211.00
184_F199_L1.2141.00
22_L160_L1.2011.00
35_G203_K1.1941.00
105_A148_D1.1941.00
198_V213_A1.1651.00
43_A68_Y1.1491.00
54_K124_F1.1371.00
50_L88_L1.1201.00
137_A140_K1.1181.00
131_S163_V1.1171.00
186_L199_L1.1091.00
172_L175_R1.1021.00
6_V23_P1.0961.00
49_L56_G1.0741.00
60_T68_Y1.0721.00
63_Q205_I1.0671.00
65_S69_L1.0671.00
61_T132_I1.0641.00
164_H178_S1.0591.00
69_L73_K1.0521.00
116_I120_K1.0481.00
22_L45_F1.0471.00
25_P156_G1.0441.00
45_F49_L1.0441.00
12_N44_Q1.0431.00
24_F54_K1.0401.00
36_T192_G1.0361.00
89_G92_P1.0311.00
204_T208_I1.0311.00
28_I158_L1.0251.00
89_G119_R1.0171.00
152_L157_K1.0141.00
58_I126_I1.0091.00
148_D151_V1.0081.00
112_I155_L1.0071.00
120_K123_D1.0011.00
50_L56_G0.9921.00
39_S68_Y0.9901.00
108_I133_V0.9841.00
43_A58_I0.9831.00
138_E141_Q0.9821.00
108_I136_F0.9771.00
30_I160_L0.9761.00
57_Y125_I0.9721.00
139_I143_L0.9711.00
86_G92_P0.9691.00
130_L176_I0.9661.00
59_I125_I0.9641.00
41_L199_L0.9581.00
46_C50_L0.9531.00
23_P26_A0.9521.00
147_K151_V0.9511.00
27_L161_F0.9481.00
81_P85_K0.9421.00
180_V183_Y0.9381.00
62_E164_H0.9351.00
40_V71_K0.9341.00
18_R214_I0.9311.00
138_E173_K0.9281.00
187_S200_E0.9281.00
127_I149_A0.9121.00
12_N16_D0.9101.00
33_D36_T0.9061.00
172_L178_S0.9061.00
111_I114_D0.9001.00
23_P204_T0.8991.00
5_T66_K0.8921.00
116_I156_G0.8811.00
112_I116_I0.8771.00
45_F124_F0.8771.00
27_L149_A0.8681.00
79_L82_F0.8571.00
198_V211_A0.8541.00
15_L201_R0.8511.00
7_I207_G0.8481.00
31_E185_K0.8481.00
44_Q48_G0.8421.00
113_I152_L0.8411.00
55_K87_V0.8381.00
129_S162_T0.8351.00
113_I148_D0.8301.00
42_S58_I0.8231.00
186_L197_K0.8221.00
32_G38_K0.8191.00
166_D169_N0.8181.00
45_F48_G0.8161.00
144_Q148_D0.8141.00
30_I184_F0.8141.00
39_S43_A0.8041.00
22_L124_F0.8041.00
35_G209_Q0.8021.00
177_T183_Y0.8021.00
71_K206_G0.7981.00
200_E211_A0.7921.00
56_G124_F0.7921.00
56_G126_I0.7901.00
86_G89_G0.7901.00
76_K79_L0.7861.00
87_V92_P0.7841.00
152_L159_I0.7841.00
150_R153_V0.7831.00
184_F201_R0.7781.00
62_E205_I0.7771.00
57_Y112_I0.7741.00
108_I111_I0.7701.00
22_L158_L0.7701.00
26_A206_G0.7571.00
196_I215_S0.7571.00
106_N111_I0.7531.00
18_R204_T0.7521.00
143_L147_K0.7461.00
120_K155_L0.7391.00
22_L28_I0.7371.00
106_N148_D0.7320.99
109_L148_D0.7300.99
28_I184_F0.7300.99
42_S160_L0.7290.99
30_I41_L0.7280.99
44_Q47_Y0.7280.99
27_L159_I0.7120.99
25_P64_T0.7120.99
29_M176_I0.7100.99
12_N214_I0.7080.99
55_K119_R0.7080.99
78_D82_F0.7080.99
77_I82_F0.7010.99
34_H180_V0.7000.99
16_D48_G0.6950.99
42_S45_F0.6950.99
116_I119_R0.6950.99
151_V154_D0.6920.99
108_I112_I0.6920.99
55_K122_M0.6850.99
9_K15_L0.6850.99
20_S23_P0.6820.99
123_D158_L0.6820.99
45_F160_L0.6790.99
60_T163_V0.6760.99
67_D206_G0.6760.99
50_L82_F0.6750.99
41_L186_L0.6730.99
189_T198_V0.6710.99
14_D214_I0.6690.99
31_E202_I0.6690.99
74_D82_F0.6660.99
19_L184_F0.6650.99
12_N48_G0.6640.99
36_T197_K0.6590.99
8_I49_L0.6540.99
111_I115_F0.6490.99
197_K211_A0.6470.99
116_I152_L0.6470.99
33_D170_E0.6420.99
109_L145_F0.6410.99
187_S192_G0.6410.99
188_A197_K0.6350.99
59_I112_I0.6340.99
19_L22_L0.6330.99
38_K128_D0.6330.99
137_A141_Q0.6320.99
70_K73_K0.6290.98
44_Q75_V0.6290.98
202_I209_Q0.6290.98
86_G90_I0.6260.98
40_V44_Q0.6260.98
112_I115_F0.6260.98
47_Y78_D0.6250.98
10_T15_L0.6210.98
24_F158_L0.6200.98
144_Q147_K0.6200.98
188_A192_G0.6180.98
164_H167_V0.6160.98
26_A181_D0.6020.98
146_M176_I0.5990.98
116_I123_D0.5980.98
113_I116_I0.5980.98
187_S198_V0.5950.98
196_I213_A0.5930.98
190_S197_K0.5880.98
29_M183_Y0.5880.98
7_I23_P0.5880.98
31_E165_P0.5870.98
192_G195_R0.5860.98
142_I147_K0.5770.97
77_I81_P0.5760.97
210_G214_I0.5750.97
136_F144_Q0.5750.97
26_A182_V0.5690.97
113_I155_L0.5680.97
149_A161_F0.5680.97
54_K158_L0.5630.97
14_D18_R0.5590.97
47_Y77_I0.5580.97
7_I204_T0.5510.96
130_L145_F0.5500.96
108_I116_I0.5500.96
127_I133_V0.5490.96
11_G48_G0.5460.96
29_M161_F0.5390.96
189_T196_I0.5370.96
11_G45_F0.5360.96
40_V75_V0.5360.96
112_I122_M0.5340.96
189_T192_G0.5330.96
208_I211_A0.5320.96
8_I158_L0.5300.96
20_S208_I0.5290.96
8_I54_K0.5270.95
47_Y72_M0.5260.95
173_K178_S0.5200.95
150_R161_F0.5200.95
62_E143_L0.5190.95
149_A159_I0.5190.95
15_L199_L0.5190.95
133_V145_F0.5170.95
165_P175_R0.5160.95
9_K52_G0.5150.95
129_S164_H0.5140.95
67_D71_K0.5130.95
32_G37_G0.5080.95
104_L107_K0.5070.94
23_P182_V0.5070.94
38_K164_H0.5070.94
88_L92_P0.5050.94
167_V177_T0.5040.94
43_A60_T0.5020.94
64_T154_D0.5000.94
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3bs4A 1 0.9231 100 0.278 Contact Map
2dr3A 3 0.9701 100 0.346 Contact Map
3bgwA 3 0.9658 100 0.359 Contact Map
4nmnA 3 0.9615 100 0.382 Contact Map
2q6tA 1 0.9316 100 0.382 Contact Map
2cvhA 1 0.8761 100 0.394 Contact Map
1n0wA 1 0.8291 100 0.412 Contact Map
2w0mA 1 0.9103 100 0.418 Contact Map
2z43A 1 0.8547 100 0.427 Contact Map
3ldaA 1 0.8632 100 0.428 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0082 seconds.