Q97WA2 - SULSO - GREMLIN Contacts

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Q97WA2 - Uncharacterized protein

UniProt:	Q97WA2	Sequences: MIRINVVGFKGGSGKSTISYHLARQLSEYYNVVLVDKTYSGTISRIYNINNNIFSFLKGRNELFYINKNNLSVINMSFLNEDDLNGIDFNAFKYLYSKLTKDSDIVIVDHSSIPHDFATEIELKAFMENFRNFAYNTVLVLSGDEIPIKKYLNYTVLLNDFVKNYAEKILGISLPTDVKFLKIVAVIINKILKGQESKLEEFIRGDEILQRSARFIIPYYLSLTQRHFKDIDPPKEISDITRYILDFLREPTSIL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	255 (213)
Sequences:	5762 (3679)
Seq/√Len:	252.0

ECOLI - MRP BCSQ MIND
BACSU - SALA SOJ MIND YLXH
HALSA - Q9HQJ7 Q9HQY5 Q9HHZ7 Q9HNF1 Q9HHU2 O51991 O51969 O54573
SULSO - Q97WA2 Q97VX7 Q97YM8 Q97ZW4 Q981B3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
19_S	107_I	4.464	1.00
30_Y	105_I	3.658	1.00
193_K	200_E	3.202	1.00
33_V	103_S	3.128	1.00
29_Y	242_R	2.805	1.00
19_S	34_L	2.692	1.00
73_V	78_F	2.465	1.00
72_S	101_K	2.428	1.00
26_L	107_I	2.355	1.00
213_A	216_I	2.342	1.00
28_E	238_S	2.289	1.00
47_Y	73_V	2.237	1.00
18_I	237_I	2.192	1.00
20_Y	47_Y	2.105	1.00
64_F	67_N	2.076	1.00
20_Y	43_I	2.028	1.00
201_E	205_G	2.012	1.00
44_S	77_S	2.010	1.00
192_L	199_L	2.000	1.00
16_S	46_I	1.971	1.00
49_I	73_V	1.921	1.00
94_Y	98_K	1.918	1.00
26_L	105_I	1.867	1.00
229_K	234_P	1.864	1.00
20_Y	46_I	1.843	1.00
199_L	203_I	1.810	1.00
199_L	202_F	1.758	1.00
194_G	199_L	1.720	1.00
33_V	106_V	1.719	1.00
193_K	196_E	1.716	1.00
222_S	225_Q	1.709	1.00
72_S	103_S	1.708	1.00
40_S	115_H	1.677	1.00
215_F	240_I	1.640	1.00
197_S	200_E	1.626	1.00
74_I	78_F	1.617	1.00
6_V	107_I	1.616	1.00
156_V	159_N	1.611	1.00
42_T	150_K	1.598	1.00
23_A	107_I	1.587	1.00
231_I	234_P	1.580	1.00
195_Q	200_E	1.559	1.00
139_L	151_Y	1.541	1.00
152_L	208_I	1.530	1.00
7_V	110_H	1.524	1.00
46_I	146_I	1.519	1.00
190_K	219_Y	1.499	1.00
141_L	147_P	1.474	1.00
235_K	238_S	1.474	1.00
239_D	243_Y	1.468	1.00
53_I	56_F	1.467	1.00
91_A	95_L	1.455	1.00
232_D	235_K	1.454	1.00
139_L	155_T	1.451	1.00
35_V	106_V	1.442	1.00
200_E	203_I	1.435	1.00
202_F	205_G	1.412	1.00
18_I	140_V	1.395	1.00
239_D	242_R	1.375	1.00
18_I	187_I	1.371	1.00
85_N	156_V	1.368	1.00
45_R	149_K	1.354	1.00
57_L	60_R	1.350	1.00
25_Q	29_Y	1.336	1.00
37_K	108_V	1.326	1.00
24_R	28_E	1.321	1.00
17_T	223_L	1.301	1.00
7_V	154_Y	1.299	1.00
25_Q	241_T	1.283	1.00
29_Y	238_S	1.275	1.00
193_K	202_F	1.274	1.00
221_L	224_T	1.253	1.00
237_I	241_T	1.251	1.00
4_I	184_V	1.243	1.00
31_N	102_D	1.221	1.00
234_P	241_T	1.216	1.00
226_R	229_K	1.210	1.00
218_P	236_E	1.205	1.00
93_K	97_S	1.203	1.00
187_I	240_I	1.192	1.00
35_V	108_V	1.182	1.00
235_K	239_D	1.175	1.00
18_I	22_L	1.171	1.00
74_I	99_L	1.168	1.00
226_R	230_D	1.155	1.00
5_N	110_H	1.155	1.00
103_S	106_V	1.144	1.00
62_E	65_Y	1.140	1.00
110_H	118_A	1.137	1.00
55_S	60_R	1.134	1.00
49_I	78_F	1.126	1.00
88_D	91_A	1.126	1.00
63_L	68_K	1.124	1.00
136_N	182_K	1.121	1.00
53_I	74_I	1.121	1.00
16_S	43_I	1.113	1.00
227_H	230_D	1.100	1.00
199_L	205_G	1.094	1.00
206_D	213_A	1.092	1.00
185_A	212_S	1.091	1.00
65_Y	68_K	1.087	1.00
55_S	58_K	1.078	1.00
76_M	79_L	1.075	1.00
236_E	239_D	1.063	1.00
34_L	43_I	1.058	1.00
137_T	158_L	1.051	1.00
201_E	204_R	1.033	1.00
52_N	56_F	1.031	1.00
222_S	228_F	1.030	1.00
5_N	133_F	1.019	1.00
124_K	127_M	1.018	1.00
234_P	237_I	1.018	1.00
199_L	204_R	1.014	1.00
24_R	71_L	1.010	1.00
230_D	235_K	0.999	1.00
47_Y	71_L	0.998	1.00
56_F	59_G	0.995	1.00
52_N	55_S	0.992	1.00
86_G	89_F	0.990	1.00
198_K	202_F	0.984	1.00
200_E	204_R	0.974	1.00
24_R	69_N	0.968	1.00
27_S	71_L	0.967	1.00
228_F	231_I	0.962	1.00
56_F	60_R	0.954	1.00
26_L	32_V	0.950	1.00
90_N	93_K	0.939	1.00
95_L	99_L	0.926	1.00
233_P	236_E	0.924	1.00
76_M	80_N	0.923	1.00
198_K	203_I	0.921	1.00
227_H	234_P	0.919	1.00
228_F	234_P	0.916	1.00
234_P	238_S	0.908	1.00
77_S	80_N	0.908	1.00
63_L	66_I	0.906	1.00
196_E	200_E	0.905	1.00
192_L	201_E	0.902	1.00
92_F	95_L	0.902	1.00
81_E	84_L	0.896	1.00
191_I	216_I	0.893	1.00
235_K	241_T	0.879	1.00
227_H	233_P	0.875	1.00
215_F	220_Y	0.873	1.00
136_N	184_V	0.873	1.00
31_N	104_D	0.871	1.00
85_N	89_F	0.870	1.00
53_I	58_K	0.869	1.00
43_I	73_V	0.869	1.00
233_P	237_I	0.860	0.99
230_D	234_P	0.859	0.99
74_I	79_L	0.856	0.99
23_A	34_L	0.851	0.99
84_L	160_D	0.850	0.99
229_K	241_T	0.847	0.99
206_D	215_F	0.845	0.99
238_S	241_T	0.844	0.99
52_N	58_K	0.841	0.99
62_E	67_N	0.841	0.99
60_R	65_Y	0.837	0.99
149_K	153_N	0.837	0.99
221_L	225_Q	0.830	0.99
214_R	220_Y	0.829	0.99
238_S	242_R	0.827	0.99
128_E	132_N	0.822	0.99
87_I	157_L	0.814	0.99
51_N	54_F	0.812	0.99
27_S	70_N	0.807	0.99
229_K	235_K	0.797	0.99
227_H	241_T	0.796	0.99
34_L	73_V	0.792	0.99
16_S	42_T	0.791	0.99
126_F	161_F	0.791	0.99
85_N	88_D	0.784	0.99
59_G	64_F	0.784	0.99
53_I	57_L	0.782	0.99
206_D	214_R	0.782	0.99
232_D	236_E	0.782	0.99
54_F	58_K	0.774	0.99
220_Y	224_T	0.767	0.99
188_I	191_I	0.766	0.99
92_F	117_F	0.766	0.99
231_I	236_E	0.763	0.99
230_D	241_T	0.763	0.99
83_D	86_G	0.760	0.99
60_R	68_K	0.757	0.99
209_L	212_S	0.756	0.99
59_G	63_L	0.752	0.99
51_N	66_I	0.744	0.98
84_L	156_V	0.741	0.98
21_H	24_R	0.739	0.98
49_I	66_I	0.738	0.98
78_F	81_E	0.730	0.98
228_F	241_T	0.726	0.98
228_F	235_K	0.720	0.98
59_G	62_E	0.718	0.98
5_N	137_T	0.718	0.98
77_S	81_E	0.717	0.98
152_L	209_L	0.710	0.98
209_L	215_F	0.707	0.98
69_N	72_S	0.706	0.98
138_V	240_I	0.704	0.98
141_L	186_V	0.704	0.98
70_N	73_V	0.703	0.98
45_R	50_N	0.700	0.98
136_N	185_A	0.700	0.98
27_S	69_N	0.695	0.98
212_S	243_Y	0.687	0.97
70_N	74_I	0.682	0.97
227_H	231_I	0.681	0.97
217_I	236_E	0.676	0.97
75_N	79_L	0.674	0.97
220_Y	233_P	0.657	0.97
133_F	136_N	0.656	0.97
21_H	25_Q	0.652	0.97
52_N	57_L	0.651	0.96
142_S	190_K	0.649	0.96
240_I	243_Y	0.648	0.96
60_R	63_L	0.639	0.96
5_N	108_V	0.639	0.96
138_V	214_R	0.638	0.96
25_Q	28_E	0.637	0.96
7_V	158_L	0.636	0.96
83_D	89_F	0.635	0.96
149_K	156_V	0.633	0.96
60_R	66_I	0.631	0.96
75_N	78_F	0.630	0.96
237_I	240_I	0.628	0.96
207_E	210_Q	0.626	0.96
66_I	72_S	0.624	0.96
124_K	128_E	0.623	0.95
73_V	77_S	0.619	0.95
50_N	82_D	0.618	0.95
206_D	212_S	0.618	0.95
70_N	75_N	0.616	0.95
22_L	138_V	0.616	0.95
4_I	105_I	0.616	0.95
138_V	187_I	0.614	0.95
63_L	74_I	0.610	0.95
22_L	241_T	0.610	0.95
80_N	86_G	0.609	0.95
212_S	215_F	0.607	0.95
110_H	154_Y	0.607	0.95
9_F	154_Y	0.604	0.95
137_T	181_L	0.603	0.95
145_E	149_K	0.602	0.95
70_N	79_L	0.602	0.95
63_L	67_N	0.601	0.95
118_A	154_Y	0.601	0.95
125_A	128_E	0.599	0.94
226_R	234_P	0.592	0.94
19_S	43_I	0.590	0.94
223_L	233_P	0.588	0.94
226_R	231_I	0.588	0.94
51_N	55_S	0.584	0.94
198_K	201_E	0.582	0.94
64_F	68_K	0.582	0.94
55_S	59_G	0.581	0.94
186_V	211_R	0.580	0.93
145_E	152_L	0.580	0.93
34_L	47_Y	0.580	0.93
238_S	243_Y	0.574	0.93
228_F	233_P	0.574	0.93
161_F	180_F	0.574	0.93
231_I	237_I	0.573	0.93
142_S	150_K	0.573	0.93
45_R	145_E	0.573	0.93
83_D	152_L	0.572	0.93
11_G	14_G	0.572	0.93
67_N	72_S	0.572	0.93
212_S	225_Q	0.571	0.93
18_I	217_I	0.569	0.93
212_S	220_Y	0.567	0.93
155_T	209_L	0.566	0.93
213_A	220_Y	0.564	0.92
44_S	75_N	0.564	0.92
58_K	100_T	0.562	0.92
227_H	237_I	0.560	0.92
215_F	221_L	0.560	0.92
147_P	150_K	0.556	0.92
41_G	114_P	0.555	0.92
37_K	92_F	0.554	0.92
145_E	148_I	0.553	0.92
6_V	22_L	0.553	0.92
25_Q	238_S	0.551	0.92
237_I	243_Y	0.551	0.92
37_K	110_H	0.549	0.91
20_Y	73_V	0.548	0.91
64_F	69_N	0.547	0.91
93_K	128_E	0.544	0.91
236_E	240_I	0.543	0.91
227_H	232_D	0.539	0.91
137_T	150_K	0.536	0.90
24_R	47_Y	0.535	0.90
57_L	100_T	0.535	0.90
155_T	183_I	0.531	0.90
73_V	81_E	0.529	0.90
118_A	158_L	0.528	0.90
214_R	225_Q	0.526	0.90
76_M	82_D	0.526	0.90
209_L	220_Y	0.526	0.90
17_T	46_I	0.524	0.89
186_V	206_D	0.522	0.89
233_P	241_T	0.522	0.89
8_G	113_I	0.520	0.89
215_F	224_T	0.516	0.89
27_S	32_V	0.515	0.89
231_I	241_T	0.515	0.89
236_E	241_T	0.514	0.89
11_G	15_K	0.513	0.89
207_E	220_Y	0.512	0.88
42_T	117_F	0.512	0.88
73_V	76_M	0.511	0.88
4_I	138_V	0.508	0.88
59_G	65_Y	0.507	0.88
192_L	216_I	0.507	0.88
12_G	15_K	0.505	0.88
71_L	75_N	0.505	0.88
7_V	139_L	0.500	0.87
42_T	151_Y	0.500	0.87

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
5aunB	2	0.8235	100	0.506	Contact Map
3pg5A	2	0.8824	100	0.511	Contact Map
4rz3A	2	0.8588	100	0.514	Contact Map
4v03A	2	0.8431	100	0.522	Contact Map
3kjhA	2	0.8471	100	0.524	Contact Map
1g3qA	1	0.8549	100	0.525	Contact Map
1hyqA	1	0.8431	100	0.526	Contact Map
4pfsA	1	0.8824	100	0.526	Contact Map
3ea0A	2	0.8471	100	0.527	Contact Map
3io3A	2	0.7529	100	0.534	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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