Q97WA1 - SULSO - GREMLIN Contacts

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Q97WA1 - Alcohol dehydrogenase (Zn containing) (Adh-6)

UniProt:	Q97WA1	Sequences: MQIRLTLMKALVFDKSGLENLKVKEVQEPQLGPHDVLIRVVKSGLNPIDYFVINAIPVTPMPHIPGAELAGVVEKVGDHVKGLNKGDKVVVYNRVFDGTCDLCLSGREMLCRNGGIMSVITNGGWSEYFSVPDKNIFKIPESMSWDVAASLPVAALTSYHSLKELEVGPNDIIVIFGASGNTGLFAVQLAKKFGATVIAVSRKNWLKEFGADYIVGYDDVVQKVKEITNGKMADVVINSLGSSMWENSLQVLGLDGQLAFFGTLTGSEVKVNLSSLYGRHIKVVGTTGGSRKELMELINLCKDCKVKVHKTYKLDEGVEAVKEIMNENREGRIMLQVS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	338 (300)
Sequences:	52609 (36325)
Seq/√Len:	2097.2

ECOLI - YBDR YDJL ADHP GATD AHR YPHC RSPB YDJJ FRMA YAHK YGGP TDH YJJN IDND QOR1 YCJQ ACUI CURA
BACSU - DHSO ADHB ADHA YJMD YYCR YOGA TDH BDHA YHFP YFMJ
HALSA - Q9HP38 Q9HMB6 Q9HR85 GLCDH Q9HQS8
SULSO - Q97WA1 Q97V32 Q97YT7 Q97ZV3 Q7LXK1 Q97VW0 ADH Q97XR4 Q97YM2 Q97TZ4 Q97VV5 GLCD2 GLCD1 GLCD3 Q97W06 Q97UW5 Q97VB8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
41_V	145_W	3.055	1.00
39_R	74_E	2.970	1.00
41_V	72_V	2.913	1.00
14_D	24_K	2.761	1.00
316_E	319_E	2.749	1.00
172_I	196_T	2.629	1.00
37_L	74_E	2.524	1.00
84_N	87_D	2.502	1.00
87_D	138_K	2.380	1.00
88_K	139_I	2.370	1.00
14_D	22_K	2.345	1.00
36_V	136_I	2.316	1.00
178_A	199_A	2.300	1.00
28_E	128_Y	2.298	1.00
312_Y	323_E	2.276	1.00
12_V	24_K	2.273	1.00
144_S	147_V	2.271	1.00
191_K	212_D	2.252	1.00
168_G	171_D	2.235	1.00
310_K	323_E	2.226	1.00
39_R	128_Y	2.219	1.00
173_I	190_A	2.170	1.00
39_R	72_V	2.153	1.00
223_K	226_E	2.131	1.00
146_D	311_T	2.114	1.00
82_G	133_D	2.085	1.00
69_L	91_V	2.074	1.00
32_G	35_D	2.050	1.00
33_P	78_D	2.039	1.00
33_P	79_H	2.018	1.00
142_S	302_K	2.014	1.00
313_K	316_E	1.999	1.00
37_L	130_S	1.990	1.00
203_K	207_K	1.983	1.00
163_K	193_F	1.972	1.00
34_H	79_H	1.939	1.00
196_T	213_Y	1.938	1.00
54_N	325_M	1.937	1.00
74_E	128_Y	1.931	1.00
187_V	211_A	1.893	1.00
299_N	303_D	1.882	1.00
69_L	124_G	1.865	1.00
322_K	326_N	1.854	1.00
192_K	305_K	1.848	1.00
88_K	145_W	1.841	1.00
257_Q	282_K	1.794	1.00
155_A	185_F	1.792	1.00
70_A	145_W	1.786	1.00
204_N	208_E	1.768	1.00
234_D	253_G	1.743	1.00
163_K	296_E	1.729	1.00
203_K	214_I	1.720	1.00
323_E	328_N	1.720	1.00
257_Q	284_V	1.696	1.00
174_V	200_V	1.694	1.00
174_V	233_A	1.693	1.00
139_I	145_W	1.673	1.00
204_N	207_K	1.669	1.00
319_E	322_K	1.654	1.00
319_E	323_E	1.628	1.00
9_K	25_E	1.608	1.00
30_Q	75_K	1.592	1.00
11_L	317_G	1.588	1.00
198_I	233_A	1.577	1.00
37_L	128_Y	1.573	1.00
312_Y	320_A	1.570	1.00
72_V	88_K	1.562	1.00
205_W	208_E	1.557	1.00
213_Y	227_I	1.544	1.00
139_I	148_A	1.543	1.00
196_T	212_D	1.542	1.00
10_A	26_V	1.520	1.00
252_L	258_L	1.513	1.00
75_K	85_K	1.501	1.00
176_F	248_S	1.494	1.00
76_V	85_K	1.491	1.00
37_L	75_K	1.480	1.00
318_V	322_K	1.473	1.00
236_V	252_L	1.468	1.00
83_L	87_D	1.457	1.00
34_H	132_P	1.453	1.00
252_L	281_I	1.448	1.00
35_D	132_P	1.442	1.00
83_L	138_K	1.430	1.00
165_L	235_V	1.430	1.00
252_L	256_G	1.419	1.00
40_V	69_L	1.412	1.00
9_K	315_D	1.406	1.00
35_D	130_S	1.405	1.00
125_W	321_V	1.403	1.00
77_G	80_V	1.388	1.00
171_D	257_Q	1.383	1.00
192_K	300_L	1.366	1.00
42_K	146_D	1.354	1.00
236_V	248_S	1.348	1.00
88_K	141_E	1.347	1.00
218_D	223_K	1.345	1.00
31_L	130_S	1.326	1.00
11_L	23_V	1.317	1.00
72_V	145_W	1.309	1.00
159_Y	163_K	1.307	1.00
31_L	37_L	1.297	1.00
299_N	302_K	1.296	1.00
36_V	83_L	1.295	1.00
73_V	83_L	1.286	1.00
219_D	222_Q	1.282	1.00
309_H	323_E	1.271	1.00
9_K	127_E	1.253	1.00
223_K	227_I	1.251	1.00
186_A	237_I	1.244	1.00
172_I	198_I	1.243	1.00
41_V	88_K	1.239	1.00
176_F	200_V	1.229	1.00
53_I	321_V	1.220	1.00
222_Q	226_E	1.216	1.00
40_V	129_F	1.206	1.00
28_E	37_L	1.178	1.00
203_K	216_G	1.165	1.00
151_L	301_C	1.163	1.00
83_L	136_I	1.157	1.00
172_I	234_D	1.154	1.00
15_K	20_N	1.149	1.00
12_V	26_V	1.147	1.00
34_H	133_D	1.145	1.00
187_V	199_A	1.141	1.00
291_R	295_M	1.134	1.00
300_L	305_K	1.134	1.00
219_D	223_K	1.133	1.00
221_V	250_Q	1.119	1.00
171_D	234_D	1.117	1.00
167_V	195_A	1.107	1.00
8_M	28_E	1.107	1.00
296_E	299_N	1.095	1.00
207_K	214_I	1.092	1.00
250_Q	275_S	1.092	1.00
160_H	293_E	1.087	1.00
131_V	136_I	1.080	1.00
188_Q	307_K	1.079	1.00
158_S	186_A	1.053	1.00
205_W	330_E	1.048	1.00
38_I	89_V	1.039	1.00
43_S	125_W	1.032	1.00
198_I	213_Y	1.031	1.00
165_L	259_A	1.029	1.00
42_K	145_W	1.027	1.00
317_G	335_L	1.025	1.00
240_L	244_M	1.024	1.00
190_A	195_A	1.024	1.00
9_K	23_V	1.020	1.00
163_K	293_E	1.017	1.00
16_S	61_M	1.014	1.00
167_V	171_D	1.012	1.00
53_I	325_M	1.007	1.00
23_V	315_D	1.005	1.00
221_V	225_K	1.004	1.00
80_V	133_D	1.003	1.00
74_E	85_K	1.001	1.00
159_Y	296_E	0.995	1.00
38_I	71_G	0.985	1.00
221_V	247_N	0.978	1.00
322_K	325_M	0.976	1.00
81_K	133_D	0.975	1.00
247_N	250_Q	0.974	1.00
11_L	314_L	0.970	1.00
45_L	320_A	0.966	1.00
31_L	35_D	0.962	1.00
323_E	333_I	0.962	1.00
296_E	300_L	0.959	1.00
155_A	297_L	0.957	1.00
147_V	307_K	0.953	1.00
161_S	261_F	0.936	1.00
200_V	217_Y	0.933	1.00
161_S	237_I	0.932	1.00
295_M	299_N	0.930	1.00
275_S	279_R	0.926	1.00
178_A	187_V	0.926	1.00
178_A	201_S	0.926	1.00
90_V	298_I	0.926	1.00
207_K	213_Y	0.925	1.00
14_D	20_N	0.924	1.00
171_D	235_V	0.921	1.00
199_A	206_L	0.920	1.00
312_Y	316_E	0.919	1.00
158_S	189_L	0.918	1.00
184_L	205_W	0.911	1.00
50_Y	324_I	0.910	1.00
15_K	19_E	0.908	1.00
246_E	250_Q	0.898	1.00
143_M	148_A	0.896	1.00
11_L	21_L	0.894	1.00
125_W	317_G	0.892	1.00
41_V	70_A	0.890	1.00
10_A	64_I	0.881	1.00
255_D	280_H	0.881	1.00
187_V	197_V	0.880	1.00
228_T	232_M	0.876	1.00
63_H	122_N	0.875	1.00
199_A	211_A	0.868	1.00
76_V	84_N	0.867	1.00
176_F	236_V	0.865	1.00
42_K	334_M	0.863	1.00
238_N	241_G	0.862	1.00
43_S	124_G	0.861	1.00
292_K	296_E	0.858	1.00
202_R	330_E	0.848	1.00
329_R	333_I	0.848	1.00
174_V	251_V	0.848	1.00
39_R	127_E	0.846	1.00
76_V	80_V	0.844	1.00
28_E	75_K	0.842	1.00
156_L	293_E	0.839	1.00
46_N	68_E	0.836	1.00
224_V	233_A	0.827	1.00
178_A	206_L	0.826	1.00
166_E	257_Q	0.824	1.00
201_S	214_I	0.817	1.00
175_I	190_A	0.815	1.00
12_V	64_I	0.814	1.00
193_F	296_E	0.807	1.00
198_I	215_V	0.807	1.00
137_F	295_M	0.807	1.00
172_I	233_A	0.807	1.00
69_L	129_F	0.807	1.00
272_N	275_S	0.805	1.00
124_G	129_F	0.796	1.00
26_V	122_N	0.790	1.00
91_V	131_V	0.789	1.00
292_K	295_M	0.789	1.00
312_Y	333_I	0.789	1.00
173_I	195_A	0.785	1.00
28_E	74_E	0.785	1.00
236_V	258_L	0.784	1.00
44_G	68_E	0.784	1.00
176_F	244_M	0.782	1.00
45_L	324_I	0.782	1.00
162_L	190_A	0.782	1.00
220_V	247_N	0.781	1.00
189_L	297_L	0.777	1.00
248_S	258_L	0.771	1.00
46_N	67_A	0.769	1.00
221_V	251_V	0.767	1.00
175_I	186_A	0.767	1.00
141_E	302_K	0.767	1.00
26_V	64_I	0.766	1.00
36_V	133_D	0.765	1.00
8_M	127_E	0.763	1.00
84_N	138_K	0.763	1.00
30_Q	37_L	0.763	1.00
246_E	268_E	0.758	1.00
310_K	319_E	0.756	1.00
239_S	261_F	0.754	1.00
32_G	130_S	0.749	1.00
125_W	335_L	0.741	1.00
300_L	303_D	0.740	1.00
276_L	283_V	0.739	1.00
323_E	326_N	0.737	1.00
17_G	20_N	0.736	1.00
190_A	197_V	0.726	1.00
222_Q	225_K	0.725	1.00
11_L	318_V	0.725	1.00
198_I	227_I	0.721	1.00
89_V	136_I	0.718	1.00
82_G	291_R	0.717	1.00
198_I	224_V	0.717	1.00
246_E	275_S	0.714	1.00
189_L	300_L	0.713	1.00
158_S	185_F	0.713	1.00
34_H	78_D	0.713	1.00
23_V	314_L	0.712	1.00
90_V	139_I	0.711	1.00
31_L	75_K	0.710	1.00
206_L	211_A	0.710	1.00
46_N	49_D	0.706	1.00
310_K	333_I	0.706	1.00
201_S	206_L	0.706	1.00
167_V	235_V	0.705	1.00
201_S	217_Y	0.701	1.00
48_I	67_A	0.701	1.00
166_E	282_K	0.700	1.00
298_I	302_K	0.699	1.00
140_P	302_K	0.698	1.00
50_Y	325_M	0.698	1.00
70_A	149_A	0.696	1.00
172_I	231_K	0.693	1.00
34_H	77_G	0.689	1.00
260_F	283_V	0.687	1.00
201_S	216_G	0.685	1.00
159_Y	300_L	0.684	1.00
300_L	304_C	0.681	1.00
143_M	301_C	0.681	1.00
195_A	235_V	0.679	1.00
166_E	284_V	0.676	1.00
197_V	212_D	0.675	1.00
161_S	186_A	0.674	1.00
203_K	206_L	0.672	1.00
219_D	247_N	0.672	1.00
208_E	307_K	0.671	1.00
308_V	311_T	0.669	1.00
40_V	43_S	0.668	1.00
19_E	322_K	0.667	1.00
324_I	333_I	0.666	1.00
59_T	63_H	0.665	1.00
267_S	270_K	0.664	1.00
8_M	29_P	0.663	1.00
159_Y	297_L	0.663	1.00
187_V	209_F	0.662	1.00
245_W	258_L	0.661	1.00
276_L	281_I	0.661	1.00
205_W	209_F	0.661	1.00
42_K	311_T	0.660	1.00
238_N	258_L	0.660	1.00
137_F	294_L	0.659	1.00
175_I	199_A	0.659	1.00
160_H	280_H	0.657	1.00
60_P	63_H	0.655	1.00
254_L	279_R	0.655	1.00
36_V	73_V	0.654	1.00
34_H	134_K	0.652	1.00
87_D	141_E	0.650	1.00
235_V	259_A	0.647	1.00
323_E	329_R	0.646	1.00
233_A	236_V	0.646	1.00
31_L	77_G	0.645	1.00
228_T	231_K	0.642	1.00
159_Y	293_E	0.642	1.00
13_F	20_N	0.642	1.00
163_K	189_L	0.641	1.00
188_Q	209_F	0.640	1.00
243_S	246_E	0.639	1.00
276_L	285_G	0.635	1.00
42_K	70_A	0.635	1.00
169_P	194_G	0.634	1.00
191_K	197_V	0.630	1.00
29_P	130_S	0.630	1.00
38_I	91_V	0.629	1.00
137_F	298_I	0.627	1.00
211_A	214_I	0.627	1.00
231_K	253_G	0.626	1.00
150_S	334_M	0.625	1.00
90_V	152_P	0.624	1.00
157_T	182_T	0.624	1.00
70_A	139_I	0.623	1.00
164_E	293_E	0.622	1.00
158_S	182_T	0.620	1.00
213_Y	216_G	0.618	1.00
160_H	164_E	0.618	1.00
280_H	290_S	0.615	1.00
91_V	136_I	0.615	1.00
158_S	162_L	0.611	1.00
235_V	257_Q	0.610	1.00
225_K	232_M	0.609	1.00
154_A	185_F	0.609	1.00
161_S	259_A	0.605	1.00
50_Y	54_N	0.604	1.00
88_K	142_S	0.603	1.00
133_D	136_I	0.602	1.00
312_Y	335_L	0.601	1.00
15_K	22_K	0.597	1.00
70_A	88_K	0.596	1.00
20_N	318_V	0.596	1.00
213_Y	223_K	0.594	1.00
233_A	251_V	0.594	1.00
48_I	52_V	0.592	1.00
45_L	125_W	0.592	1.00
46_N	154_A	0.591	1.00
246_E	270_K	0.589	1.00
8_M	126_S	0.588	1.00
165_L	257_Q	0.584	1.00
321_V	325_M	0.580	1.00
83_L	133_D	0.580	1.00
154_A	181_N	0.579	1.00
268_E	272_N	0.578	1.00
38_I	136_I	0.577	1.00
229_N	232_M	0.577	1.00
151_L	297_L	0.576	1.00
68_E	153_V	0.572	1.00
132_P	135_N	0.571	1.00
293_E	296_E	0.571	1.00
137_F	291_R	0.570	1.00
275_S	278_G	0.569	1.00
29_P	35_D	0.568	1.00
309_H	312_Y	0.567	1.00
82_G	85_K	0.565	1.00
203_K	217_Y	0.561	1.00
76_V	87_D	0.560	1.00
186_A	261_F	0.559	1.00
46_N	153_V	0.558	1.00
67_A	153_V	0.557	1.00
215_V	227_I	0.556	1.00
220_V	224_V	0.556	1.00
21_L	321_V	0.555	1.00
244_M	248_S	0.554	1.00
202_R	328_N	0.554	1.00
164_E	282_K	0.552	1.00
48_I	51_F	0.552	1.00
43_S	335_L	0.551	1.00
81_K	84_N	0.550	1.00
174_V	236_V	0.547	1.00
173_I	235_V	0.546	1.00
29_P	128_Y	0.546	1.00
189_L	193_F	0.545	1.00
188_Q	306_V	0.545	1.00
70_A	148_A	0.543	1.00
169_P	193_F	0.543	1.00
47_P	51_F	0.540	1.00
215_V	223_K	0.539	1.00
224_V	251_V	0.538	1.00
175_I	187_V	0.538	1.00
66_G	125_W	0.538	1.00
187_V	206_L	0.537	1.00
244_M	247_N	0.536	1.00
236_V	251_V	0.533	1.00
246_E	272_N	0.533	1.00
161_S	286_T	0.532	1.00
92_Y	137_F	0.531	1.00
225_K	228_T	0.531	1.00
184_L	209_F	0.531	1.00
164_E	284_V	0.530	1.00
172_I	228_T	0.530	1.00
185_F	189_L	0.528	1.00
172_I	213_Y	0.525	1.00
200_V	215_V	0.525	1.00
13_F	53_I	0.524	1.00
162_L	189_L	0.522	1.00
76_V	83_L	0.521	1.00
245_W	260_F	0.520	1.00
45_L	335_L	0.518	1.00
259_A	286_T	0.518	1.00
268_E	271_V	0.515	1.00
286_T	289_G	0.515	1.00
82_G	138_K	0.514	1.00
228_T	233_A	0.514	1.00
162_L	186_A	0.512	1.00
312_Y	319_E	0.510	1.00
226_E	229_N	0.510	1.00
44_G	149_A	0.510	1.00
295_M	298_I	0.510	1.00
91_V	124_G	0.509	1.00
13_F	16_S	0.509	1.00
28_E	130_S	0.506	1.00
166_E	193_F	0.505	1.00
259_A	284_V	0.505	1.00
206_L	214_I	0.505	1.00
238_N	262_G	0.504	1.00
197_V	200_V	0.504	1.00
320_A	335_L	0.503	1.00
159_Y	189_L	0.503	1.00
278_G	287_T	0.502	1.00
287_T	290_S	0.500	1.00
192_K	306_V	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4gi2A	2	1	100	0.167	Contact Map
1h2bA	4	0.9645	100	0.182	Contact Map
4c4oA	4	0.9645	100	0.19	Contact Map
4ej6A	1	0.9675	100	0.193	Contact Map
3ukoA	4	0.9852	100	0.194	Contact Map
1vj0A	4	0.9763	100	0.198	Contact Map
1f8fA	4	0.9734	100	0.2	Contact Map
3jv7A	4	0.9645	100	0.201	Contact Map
4j6fA	2	0.9763	100	0.202	Contact Map
1rjwA	4	0.9675	100	0.202	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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