Q97W91 - SULSO - GREMLIN Contacts

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Q97W91 - Ribosomal protein S6 modification protein (RimK-3)

UniProt:	Q97W91	Sequences: MGFISTTEQFIKRFDVLRELERNGVVLMNRPDSMLLARDKFASLMRMRRAGIPVPNTALVEDPFEVMRLAERWGEVVIKPVVGSLGLGSVKVSDPDIAFRVAKAILSVNQPVYVQKYVKKPDRDIRVIVIGDKVLGSIYRISKSGWKTNIAQGATAQVLIPDAELEEISLKSVRVLGLDYAGIDIIEDVENGGYKIIEVNAAPLWDGFEAATNINPAKYIVTHLIEKIRR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	230 (208)
Sequences:	30352 (17641)
Seq/√Len:	1223.2

ECOLI - RIMK DDLA DDLB GSHB PUR2 ACCC PURT PURK
BACSU - DDL PURT PUR2 ACCC2 BACD ACCC1 PURK PYC
HALSA - Q9HSS5 Q9HRM3 Q9HQ67 Q9HPP8
SULSO - Q97W91 LYSX Q7LXR0 Q97VY6 Q7LXR2 PURT PURK

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
56_N	116_K	3.521	1.00
167_E	171_K	2.815	1.00
94_D	97_I	2.684	1.00
188_D	191_N	2.671	1.00
71_E	95_P	2.657	1.00
188_D	193_G	2.596	1.00
67_M	99_F	2.514	1.00
47_M	196_I	2.396	1.00
18_R	35_L	2.235	1.00
58_A	72_R	2.191	1.00
53_P	193_G	2.191	1.00
179_D	182_G	2.190	1.00
44_L	115_Q	2.106	1.00
41_F	59_L	2.066	1.00
47_M	172_S	2.043	1.00
95_P	99_F	2.011	1.00
170_L	174_R	1.985	1.00
91_K	117_Y	1.858	1.00
62_D	65_E	1.814	1.00
69_L	73_W	1.790	1.00
18_R	22_R	1.765	1.00
67_M	95_P	1.734	1.00
19_E	23_N	1.706	1.00
41_F	45_M	1.687	1.00
39_D	81_V	1.655	1.00
45_M	49_R	1.653	1.00
42_A	45_M	1.651	1.00
36_L	42_A	1.646	1.00
69_L	72_R	1.639	1.00
58_A	69_L	1.613	1.00
36_L	46_R	1.574	1.00
93_S	97_I	1.569	1.00
48_R	56_N	1.565	1.00
168_I	194_Y	1.553	1.00
43_S	47_M	1.551	1.00
45_M	48_R	1.543	1.00
164_E	168_I	1.527	1.00
173_V	181_A	1.525	1.00
178_L	182_G	1.524	1.00
171_K	175_V	1.522	1.00
99_F	103_K	1.513	1.00
218_K	222_T	1.500	1.00
125_I	187_E	1.494	1.00
50_A	175_V	1.487	1.00
163_A	167_E	1.480	1.00
123_R	139_Y	1.443	1.00
215_N	218_K	1.436	1.00
63_P	99_F	1.429	1.00
90_V	104_A	1.424	1.00
77_V	91_K	1.422	1.00
35_L	42_A	1.400	1.00
49_R	175_V	1.389	1.00
187_E	194_Y	1.379	1.00
41_F	81_V	1.377	1.00
171_K	174_R	1.352	1.00
67_M	71_E	1.351	1.00
32_D	36_L	1.345	1.00
164_E	193_G	1.339	1.00
52_I	196_I	1.336	1.00
102_A	106_L	1.329	1.00
183_I	199_V	1.325	1.00
53_P	168_I	1.320	1.00
46_R	49_R	1.320	1.00
63_P	67_M	1.316	1.00
163_A	166_E	1.316	1.00
168_I	171_K	1.311	1.00
100_R	104_A	1.310	1.00
186_I	197_I	1.305	1.00
48_R	54_V	1.298	1.00
19_E	22_R	1.289	1.00
81_V	111_P	1.274	1.00
30_R	33_S	1.269	1.00
130_I	219_Y	1.268	1.00
164_E	167_E	1.263	1.00
77_V	117_Y	1.243	1.00
76_V	114_V	1.232	1.00
129_V	173_V	1.228	1.00
21_E	30_R	1.216	1.00
44_L	54_V	1.208	1.00
118_V	195_K	1.206	1.00
63_P	103_K	1.205	1.00
77_V	89_S	1.200	1.00
46_R	175_V	1.189	1.00
20_L	27_L	1.182	1.00
219_Y	222_T	1.174	1.00
18_R	31_P	1.148	1.00
140_R	143_K	1.140	1.00
93_S	119_K	1.139	1.00
21_E	31_P	1.131	1.00
127_V	165_L	1.115	1.00
155_T	158_V	1.115	1.00
20_L	25_V	1.110	1.00
21_E	27_L	1.105	1.00
166_E	170_L	1.104	1.00
127_V	169_S	1.099	1.00
135_L	138_I	1.097	1.00
188_D	195_K	1.097	1.00
56_N	73_W	1.084	1.00
116_K	195_K	1.079	1.00
169_S	185_I	1.070	1.00
68_R	72_R	1.070	1.00
221_V	225_I	1.047	1.00
214_I	219_Y	1.042	1.00
92_V	101_V	1.038	1.00
73_W	76_V	1.036	1.00
53_P	195_K	1.030	1.00
141_I	144_S	1.025	1.00
59_L	111_P	1.022	1.00
123_R	187_E	1.014	1.00
60_V	69_L	1.008	1.00
172_S	175_V	1.005	1.00
118_V	197_I	1.004	1.00
133_K	179_D	0.996	1.00
41_F	111_P	0.993	1.00
90_V	101_V	0.990	1.00
46_R	50_A	0.990	1.00
57_T	115_Q	0.988	1.00
70_A	76_V	0.987	1.00
76_V	92_V	0.986	1.00
139_Y	142_S	0.984	1.00
23_N	26_V	0.977	1.00
82_V	109_N	0.976	1.00
66_V	98_A	0.975	1.00
106_L	110_Q	0.974	1.00
56_N	72_R	0.970	1.00
37_A	176_L	0.966	1.00
125_I	165_L	0.965	1.00
48_R	57_T	0.965	1.00
105_I	112_V	0.963	1.00
142_S	145_G	0.954	1.00
45_M	57_T	0.952	1.00
34_M	201_A	0.950	1.00
147_K	151_A	0.947	1.00
32_D	35_L	0.947	1.00
61_E	65_E	0.941	1.00
135_L	139_Y	0.940	1.00
65_E	68_R	0.939	1.00
154_A	157_Q	0.933	1.00
178_L	181_A	0.931	1.00
168_I	172_S	0.930	1.00
165_L	168_I	0.928	1.00
70_A	95_P	0.927	1.00
104_A	107_S	0.922	1.00
136_G	140_R	0.921	1.00
61_E	111_P	0.921	1.00
167_E	170_L	0.915	1.00
55_P	118_V	0.912	1.00
131_G	137_S	0.904	1.00
64_F	67_M	0.904	1.00
106_L	112_V	0.896	1.00
129_V	169_S	0.893	1.00
172_S	176_L	0.889	1.00
68_R	71_E	0.889	1.00
159_L	211_A	0.879	1.00
37_A	199_V	0.879	1.00
66_V	102_A	0.879	1.00
103_K	107_S	0.876	1.00
130_I	223_H	0.871	1.00
63_P	102_A	0.862	1.00
97_I	100_R	0.858	1.00
18_R	32_D	0.854	1.00
119_K	188_D	0.851	1.00
221_V	224_L	0.847	1.00
156_A	159_L	0.847	1.00
135_L	140_R	0.836	1.00
75_E	117_Y	0.831	1.00
30_R	179_D	0.825	1.00
152_Q	155_T	0.823	1.00
39_D	82_V	0.822	1.00
41_F	113_Y	0.820	1.00
116_K	188_D	0.820	1.00
70_A	75_E	0.819	1.00
141_I	145_G	0.817	1.00
140_R	144_S	0.814	1.00
137_S	140_R	0.811	1.00
127_V	166_E	0.808	1.00
63_P	106_L	0.808	1.00
26_V	225_I	0.801	1.00
67_M	70_A	0.800	1.00
180_Y	202_A	0.797	1.00
81_V	113_Y	0.793	1.00
165_L	194_Y	0.791	1.00
138_I	142_S	0.790	1.00
52_I	171_K	0.789	1.00
90_V	105_I	0.789	1.00
78_I	114_V	0.775	1.00
118_V	188_D	0.770	1.00
101_V	105_I	0.768	1.00
138_I	141_I	0.760	1.00
17_L	27_L	0.760	1.00
18_R	21_E	0.756	1.00
148_T	153_G	0.754	1.00
185_I	194_Y	0.753	1.00
100_R	103_K	0.750	1.00
134_V	140_R	0.749	1.00
129_V	183_I	0.747	1.00
187_E	192_G	0.739	1.00
222_T	225_I	0.739	1.00
41_F	57_T	0.738	1.00
37_A	201_A	0.738	1.00
75_E	93_S	0.734	1.00
131_G	174_R	0.732	1.00
136_G	139_Y	0.728	1.00
134_V	139_Y	0.721	1.00
70_A	98_A	0.713	1.00
39_D	42_A	0.708	1.00
49_R	176_L	0.702	1.00
168_I	185_I	0.702	1.00
165_L	185_I	0.702	1.00
78_I	92_V	0.700	1.00
78_I	101_V	0.700	1.00
82_V	111_P	0.692	1.00
39_D	111_P	0.688	1.00
132_D	174_R	0.688	1.00
65_E	69_L	0.687	1.00
32_D	42_A	0.684	1.00
31_P	35_L	0.683	1.00
60_V	66_V	0.681	1.00
64_F	68_R	0.681	1.00
118_V	122_D	0.673	1.00
74_G	116_K	0.672	1.00
139_Y	145_G	0.670	1.00
149_N	153_G	0.668	1.00
149_N	152_Q	0.667	1.00
173_V	176_L	0.664	1.00
192_G	195_K	0.664	1.00
33_S	177_G	0.661	1.00
75_E	91_K	0.660	1.00
140_R	145_G	0.658	1.00
55_P	195_K	0.658	1.00
47_M	199_V	0.651	1.00
129_V	170_L	0.651	1.00
44_L	57_T	0.650	1.00
53_P	164_E	0.650	1.00
93_S	117_Y	0.645	1.00
125_I	185_I	0.642	1.00
135_L	142_S	0.641	1.00
42_A	46_R	0.640	1.00
150_I	153_G	0.640	1.00
96_D	99_F	0.636	1.00
130_I	180_Y	0.633	1.00
139_Y	166_E	0.630	1.00
101_V	104_A	0.628	1.00
78_I	112_V	0.627	1.00
129_V	181_A	0.626	1.00
145_G	148_T	0.626	1.00
16_V	20_L	0.624	1.00
117_Y	186_I	0.621	1.00
46_R	172_S	0.621	1.00
52_I	168_I	0.619	1.00
15_D	18_R	0.615	1.00
54_V	57_T	0.614	1.00
33_S	37_A	0.612	1.00
138_I	143_K	0.610	1.00
183_I	196_I	0.607	1.00
147_K	150_I	0.605	1.00
96_D	100_R	0.604	1.00
71_E	99_F	0.596	1.00
216_P	220_I	0.596	1.00
92_V	98_A	0.593	1.00
63_P	66_V	0.592	1.00
164_E	171_K	0.591	1.00
40_K	89_S	0.590	1.00
131_G	226_E	0.589	1.00
50_A	176_L	0.589	1.00
17_L	21_E	0.589	1.00
92_V	97_I	0.589	1.00
59_L	81_V	0.589	1.00
169_S	183_I	0.585	1.00
220_I	224_L	0.585	1.00
137_S	141_I	0.585	1.00
188_D	192_G	0.584	1.00
45_M	59_L	0.583	1.00
217_A	221_V	0.582	1.00
47_M	54_V	0.582	1.00
146_W	149_N	0.582	1.00
73_W	116_K	0.579	1.00
27_L	31_P	0.578	1.00
169_S	172_S	0.578	1.00
119_K	122_D	0.574	1.00
116_K	193_G	0.568	1.00
147_K	152_Q	0.568	1.00
164_E	194_Y	0.564	1.00
154_A	158_V	0.564	1.00
160_I	192_G	0.562	1.00
119_K	123_R	0.558	1.00
132_D	136_G	0.552	1.00
52_I	172_S	0.550	1.00
169_S	199_V	0.547	1.00
148_T	151_A	0.546	1.00
203_P	216_P	0.545	1.00
90_V	100_R	0.545	1.00
58_A	73_W	0.540	1.00
44_L	48_R	0.540	1.00
102_A	112_V	0.539	1.00
155_T	159_L	0.539	1.00
127_V	185_I	0.535	1.00
172_S	196_I	0.528	1.00
148_T	152_Q	0.528	1.00
158_V	161_P	0.523	1.00
210_A	213_N	0.520	1.00
78_I	102_A	0.520	1.00
154_A	211_A	0.518	1.00
70_A	73_W	0.517	1.00
139_Y	143_K	0.517	1.00
140_R	146_W	0.511	1.00
155_T	160_I	0.510	1.00
46_R	176_L	0.509	1.00
124_D	184_D	0.506	1.00
50_A	172_S	0.502	1.00
151_A	154_A	0.502	1.00
137_S	142_S	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3vpbA	3	0.9957	100	0.29	Contact Map
3vpdA	3	0.987	100	0.295	Contact Map
4iwxA	3	0.9826	100	0.296	Contact Map
4fu0A	2	0.9783	100	0.304	Contact Map
3i12A	2	0.9783	100	0.318	Contact Map
3e5nA	2	0.9348	100	0.319	Contact Map
3lwbA	2	0.9826	100	0.321	Contact Map
2fb9A	2	0.9652	100	0.321	Contact Map
4eg0A	2	0.9217	100	0.323	Contact Map
2i87A	2	0.9391	100	0.323	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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