Q97W80 - SULSO - GREMLIN Contacts

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Q97W80 - Phosphatase, putative (NagD-like)

UniProt:	Q97W80	Sequences: MSVLNGYQLIISDVDGVIVREGDPIWENIQALRNIQNNGVKIIFVTNNSGFSRILLSRQLSYLGLKVTPDMIITSGLAAAIYMKEKLNVKSVFAVGEEGLIEELKNHGFLVFSSAESERILPDAVVMGLDRLSTYDKLSLAMRCISKGSKFIVTNMDRLWPAKDGLKLGAGALASSIIYALRRDPDFIAGKPNTWIVEIAMRISNVKKLDKILVIGDQIETDIQMGYNIGADTALVLTGISNVDDVDRSNVKPKYVVNTLLDLL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	264 (249)
Sequences:	4223 (2912)
Seq/√Len:	184.5

ECOLI - NAGD
BACSU - YUTF ARAL
HALSA - Q9HRF8 Q9HR34
SULSO - Q97W80

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
226_G	233_T	5.352	1.00
8_Q	211_K	5.101	1.00
7_Y	232_D	3.981	1.00
36_Q	71_M	3.318	1.00
213_L	234_A	3.318	1.00
224_Q	228_N	2.974	1.00
153_V	174_A	2.863	1.00
194_T	198_E	2.837	1.00
232_D	254_K	2.585	1.00
178_I	184_D	2.495	1.00
54_I	69_P	2.440	1.00
206_V	212_I	2.293	1.00
34_N	38_N	2.289	1.00
178_I	185_P	2.221	1.00
91_S	110_L	2.181	1.00
9_L	204_S	2.115	1.00
207_K	210_D	2.047	1.00
223_I	233_T	2.026	1.00
259_T	262_D	2.013	1.00
34_N	37_N	1.953	1.00
258_N	262_D	1.902	1.00
58_R	62_Y	1.790	1.00
33_R	37_N	1.781	1.00
9_L	206_V	1.780	1.00
201_M	212_I	1.706	1.00
12_S	215_I	1.698	1.00
24_P	29_I	1.684	1.00
94_A	104_L	1.670	1.00
214_V	231_A	1.654	1.00
158_R	179_Y	1.651	1.00
21_E	163_K	1.645	1.00
237_L	258_N	1.644	1.00
54_I	58_R	1.624	1.00
79_A	126_V	1.622	1.00
242_N	245_D	1.593	1.00
20_R	23_D	1.578	1.00
175_S	178_I	1.549	1.00
151_F	185_P	1.545	1.00
197_V	225_M	1.544	1.00
43_I	203_I	1.538	1.00
14_V	44_F	1.521	1.00
79_A	152_I	1.511	1.00
11_I	45_V	1.509	1.00
134_T	137_K	1.496	1.00
57_S	69_P	1.470	1.00
227_Y	254_K	1.466	1.00
50_G	129_L	1.465	1.00
237_L	256_V	1.461	1.00
241_S	245_D	1.452	1.00
175_S	179_Y	1.440	1.00
130_D	137_K	1.437	1.00
10_I	213_L	1.437	1.00
241_S	246_V	1.436	1.00
18_I	44_F	1.433	1.00
14_V	19_V	1.429	1.00
53_R	77_L	1.428	1.00
25_I	259_T	1.427	1.00
197_V	214_V	1.418	1.00
29_I	33_R	1.405	1.00
152_I	189_A	1.354	1.00
86_K	150_K	1.352	1.00
80_A	107_H	1.335	1.00
193_N	228_N	1.324	1.00
97_E	131_R	1.322	1.00
33_R	66_K	1.311	1.00
145_I	177_I	1.308	1.00
30_Q	261_L	1.305	1.00
8_Q	40_V	1.301	1.00
87_L	124_A	1.301	1.00
90_K	123_D	1.299	1.00
35_I	40_V	1.282	1.00
143_R	164_D	1.276	1.00
199_I	202_R	1.273	1.00
57_S	61_S	1.271	1.00
7_Y	213_L	1.271	1.00
98_E	102_E	1.266	1.00
234_A	257_V	1.261	1.00
91_S	123_D	1.258	1.00
51_F	59_Q	1.220	1.00
10_I	40_V	1.214	1.00
55_L	58_R	1.206	1.00
143_R	146_S	1.203	1.00
160_W	169_G	1.202	1.00
44_F	67_V	1.201	1.00
237_L	241_S	1.201	1.00
102_E	105_K	1.201	1.00
18_I	65_L	1.199	1.00
10_I	35_I	1.194	1.00
36_Q	42_I	1.192	1.00
61_S	69_P	1.187	1.00
41_K	71_M	1.183	1.00
58_R	61_S	1.172	1.00
28_N	65_L	1.161	1.00
30_Q	33_R	1.157	1.00
52_S	55_L	1.156	1.00
92_V	109_F	1.155	1.00
78_A	196_I	1.153	1.00
18_I	32_L	1.153	1.00
12_S	31_A	1.151	1.00
243_V	247_D	1.139	1.00
127_M	174_A	1.134	1.00
237_L	243_V	1.129	1.00
57_S	72_I	1.128	1.00
53_R	103_E	1.111	1.00
224_Q	251_V	1.109	1.00
162_A	167_K	1.104	1.00
49_S	75_S	1.102	1.00
11_I	200_A	1.102	1.00
29_I	65_L	1.101	1.00
14_V	17_V	1.095	1.00
138_L	176_S	1.094	1.00
81_I	85_E	1.080	1.00
76_G	80_A	1.074	1.00
124_A	150_K	1.070	1.00
218_Q	221_T	1.069	1.00
84_K	109_F	1.068	1.00
122_P	144_C	1.067	1.00
27_E	30_Q	1.063	1.00
24_P	63_L	1.059	1.00
235_L	241_S	1.056	1.00
197_V	231_A	1.054	1.00
68_T	71_M	1.047	1.00
145_I	181_L	1.043	1.00
12_S	42_I	1.037	1.00
207_K	211_K	1.032	1.00
243_V	258_N	1.023	1.00
73_I	199_I	1.018	1.00
9_L	41_K	1.017	1.00
17_V	129_L	1.010	0.99
42_I	71_M	0.998	0.99
95_V	141_A	0.995	0.99
143_R	167_K	0.995	0.99
156_M	188_I	0.988	0.99
91_S	121_L	0.988	0.99
218_Q	240_I	0.984	0.99
232_D	255_Y	0.983	0.99
139_S	143_R	0.973	0.99
81_I	199_I	0.972	0.99
125_V	141_A	0.971	0.99
54_I	102_E	0.969	0.99
174_A	188_I	0.967	0.99
9_L	212_I	0.966	0.99
198_E	202_R	0.960	0.99
73_I	200_A	0.957	0.99
93_F	144_C	0.957	0.99
101_I	105_K	0.957	0.99
85_E	202_R	0.954	0.99
139_S	167_K	0.946	0.99
43_I	204_S	0.945	0.99
246_V	253_P	0.943	0.99
12_S	260_L	0.940	0.99
158_R	175_S	0.940	0.99
45_V	214_V	0.937	0.99
145_I	148_G	0.936	0.99
139_S	168_L	0.933	0.99
25_I	28_N	0.931	0.99
36_Q	66_K	0.930	0.99
46_T	74_T	0.927	0.99
158_R	220_E	0.924	0.99
213_L	232_D	0.923	0.99
227_Y	233_T	0.920	0.99
56_L	72_I	0.919	0.99
82_Y	152_I	0.919	0.99
79_A	189_A	0.914	0.99
82_Y	189_A	0.910	0.99
98_E	101_I	0.909	0.99
23_D	163_K	0.908	0.99
198_E	208_K	0.908	0.99
246_V	256_V	0.904	0.99
129_L	133_S	0.904	0.99
101_I	113_S	0.901	0.99
22_G	62_Y	0.901	0.99
43_I	71_M	0.897	0.99
141_A	177_I	0.896	0.99
56_L	74_T	0.895	0.99
150_K	187_F	0.894	0.99
140_L	144_C	0.893	0.99
19_V	44_F	0.892	0.99
22_G	59_Q	0.887	0.99
223_I	227_Y	0.882	0.99
27_E	261_L	0.877	0.99
79_A	154_T	0.871	0.98
61_S	66_K	0.869	0.98
187_F	195_W	0.867	0.98
28_N	260_L	0.861	0.98
73_I	203_I	0.861	0.98
153_V	170_A	0.859	0.98
82_Y	86_K	0.857	0.98
104_L	126_V	0.854	0.98
59_Q	63_L	0.854	0.98
200_A	204_S	0.853	0.98
17_V	197_V	0.851	0.98
45_V	196_I	0.850	0.98
220_E	240_I	0.844	0.98
157_D	221_T	0.842	0.98
153_V	188_I	0.839	0.98
170_A	174_A	0.833	0.98
136_D	140_L	0.832	0.98
127_M	173_L	0.830	0.98
142_M	180_A	0.827	0.98
80_A	103_E	0.818	0.98
92_V	126_V	0.817	0.98
19_V	63_L	0.812	0.98
145_I	151_F	0.810	0.98
172_A	176_S	0.808	0.97
201_M	231_A	0.807	0.97
76_G	79_A	0.800	0.97
145_I	183_R	0.797	0.97
235_L	256_V	0.797	0.97
43_I	73_I	0.796	0.97
80_A	84_K	0.796	0.97
94_A	101_I	0.792	0.97
105_K	111_V	0.790	0.97
102_E	106_N	0.788	0.97
44_F	65_L	0.787	0.97
199_I	203_I	0.786	0.97
7_Y	254_K	0.777	0.97
77_L	103_E	0.773	0.97
18_I	260_L	0.772	0.97
83_M	126_V	0.770	0.97
200_A	225_M	0.768	0.97
27_E	259_T	0.757	0.96
75_S	154_T	0.755	0.96
148_G	183_R	0.748	0.96
172_A	179_Y	0.747	0.96
214_V	225_M	0.747	0.96
31_A	42_I	0.740	0.96
55_L	102_E	0.738	0.96
17_V	225_M	0.737	0.96
93_F	125_V	0.736	0.96
96_G	100_L	0.734	0.96
93_F	141_A	0.733	0.96
32_L	44_F	0.732	0.96
233_T	254_K	0.731	0.95
103_E	106_N	0.728	0.95
87_L	90_K	0.725	0.95
78_A	199_I	0.724	0.95
20_R	163_K	0.722	0.95
54_I	106_N	0.721	0.95
243_V	246_V	0.718	0.95
133_S	173_L	0.718	0.95
83_M	109_F	0.718	0.95
84_K	107_H	0.715	0.95
24_P	65_L	0.713	0.95
75_S	155_N	0.713	0.95
14_V	18_I	0.711	0.95
157_D	161_P	0.709	0.95
127_M	151_F	0.708	0.95
51_F	56_L	0.704	0.94
41_K	204_S	0.704	0.94
133_S	138_L	0.700	0.94
49_S	128_G	0.699	0.94
7_Y	10_I	0.696	0.94
99_G	103_E	0.696	0.94
176_S	179_Y	0.694	0.94
67_V	71_M	0.694	0.94
26_W	261_L	0.692	0.94
227_Y	251_V	0.691	0.94
29_I	64_G	0.686	0.94
133_S	137_K	0.685	0.94
149_S	183_R	0.670	0.93
80_A	109_F	0.669	0.93
172_A	180_A	0.667	0.93
159_L	218_Q	0.667	0.93
59_Q	62_Y	0.662	0.92
12_S	18_I	0.659	0.92
253_P	256_V	0.659	0.92
20_R	25_I	0.654	0.92
11_I	196_I	0.652	0.92
129_L	160_W	0.650	0.92
197_V	200_A	0.649	0.92
7_Y	234_A	0.648	0.92
245_D	248_R	0.647	0.92
36_Q	68_T	0.644	0.91
24_P	64_G	0.642	0.91
55_L	99_G	0.641	0.91
213_L	255_Y	0.639	0.91
122_P	127_M	0.638	0.91
11_I	212_I	0.637	0.91
81_I	84_K	0.629	0.90
17_V	160_W	0.628	0.90
219_I	249_S	0.627	0.90
36_Q	44_F	0.627	0.90
46_T	56_L	0.626	0.90
14_V	60_L	0.626	0.90
22_G	163_K	0.625	0.90
201_M	229_I	0.623	0.90
244_D	247_D	0.623	0.90
201_M	208_K	0.617	0.90
14_V	56_L	0.616	0.90
127_M	153_V	0.613	0.89
141_A	145_I	0.612	0.89
236_V	239_G	0.612	0.89
197_V	226_G	0.610	0.89
219_I	227_Y	0.610	0.89
28_N	259_T	0.607	0.89
152_I	187_F	0.604	0.89
129_L	173_L	0.603	0.89
133_S	176_S	0.602	0.88
159_L	240_I	0.602	0.88
97_E	100_L	0.601	0.88
13_D	16_G	0.599	0.88
155_N	170_A	0.599	0.88
197_V	229_I	0.599	0.88
159_L	166_L	0.599	0.88
214_V	226_G	0.595	0.88
9_L	43_I	0.594	0.88
142_M	146_S	0.593	0.88
87_L	150_K	0.589	0.87
145_I	149_S	0.588	0.87
246_V	252_K	0.585	0.87
89_V	123_D	0.584	0.87
235_L	238_T	0.581	0.87
142_M	177_I	0.581	0.87
156_M	174_A	0.579	0.86
19_V	60_L	0.579	0.86
219_I	223_I	0.578	0.86
19_V	59_Q	0.577	0.86
51_F	55_L	0.574	0.86
144_C	147_K	0.573	0.86
12_S	32_L	0.569	0.86
198_E	201_M	0.566	0.85
92_V	96_G	0.565	0.85
49_S	79_A	0.561	0.85
156_M	193_N	0.561	0.85
81_I	107_H	0.560	0.85
122_P	125_V	0.560	0.85
101_I	111_V	0.559	0.85
49_S	155_N	0.556	0.84
73_I	78_A	0.553	0.84
31_A	261_L	0.551	0.84
78_A	189_A	0.546	0.83
35_I	39_G	0.543	0.83
82_Y	124_A	0.543	0.83
18_I	24_P	0.542	0.83
36_Q	39_G	0.542	0.83
100_L	154_T	0.540	0.82
8_Q	212_I	0.538	0.82
50_G	160_W	0.537	0.82
195_W	198_E	0.531	0.81
11_I	231_A	0.529	0.81
91_S	112_F	0.528	0.81
14_V	221_T	0.527	0.81
30_Q	34_N	0.527	0.81
83_M	104_L	0.526	0.81
126_V	152_I	0.524	0.81
22_G	63_L	0.523	0.80
153_V	156_M	0.521	0.80
57_S	68_T	0.520	0.80
37_N	248_R	0.518	0.80
78_A	81_I	0.516	0.80
95_V	137_K	0.516	0.80
80_A	104_L	0.515	0.79
81_I	203_I	0.515	0.79
150_K	183_R	0.515	0.79
7_Y	255_Y	0.513	0.79
237_L	246_V	0.513	0.79
87_L	248_R	0.513	0.79
139_S	142_M	0.511	0.79
90_K	109_F	0.511	0.79
236_V	257_V	0.509	0.79
138_L	177_I	0.508	0.78
28_N	32_L	0.508	0.78
20_R	169_G	0.507	0.78
202_R	205_N	0.505	0.78
81_I	202_R	0.504	0.78
225_M	229_I	0.504	0.78
49_S	127_M	0.503	0.78
144_C	149_S	0.503	0.78
32_L	36_Q	0.501	0.78
129_L	169_G	0.500	0.77
76_G	100_L	0.500	0.77
162_A	166_L	0.500	0.77
176_S	180_A	0.500	0.77

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3kc2A	2	0.9508	100	0.385	Contact Map
2ho4A	1	0.928	100	0.424	Contact Map
1zjjA	2	0.9621	100	0.451	Contact Map
4i9fA	2	0.9621	100	0.485	Contact Map
2oycA	2	0.9886	100	0.491	Contact Map
3eprA	3	0.9583	100	0.502	Contact Map
3pdwA	1	0.9394	100	0.509	Contact Map
1vjrA	1	0.9735	100	0.51	Contact Map
1yv9A	2	0.9545	100	0.517	Contact Map
2hx1A	3	0.9924	100	0.525	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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