Q97W63 - SULSO - GREMLIN Contacts

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Q97W63 - Uncharacterized protein

UniProt:	Q97W63	Sequences: MTELPKKTKDEKRRKDEDLFKVVDSTIDYRTYLNLIQIARRLNIKEYLGAISSGKEARIYPARTFDDTYYAVKIYYTSTAQSKRAIKKYTIGDIRFEDIKVTNTKQLINTWAKKEFKNLSRLYEAGTRVPKPILVFENVLVMEFIGENGIRAPLLKELSDEEITQGLYEDLIQQVEIMVKGAKLIHGDLSEYNVIVYDNKCYIIDVGQAVPIDYEDAITLLKRDLDNINRFFENKGINIRPTEELLIKYGVTGD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	254 (211)
Sequences:	1364 (797)
Seq/√Len:	54.9

HALSA - Q9HSL0 Q9HN65
SULSO - Q97W63 Q980T1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
194_V	203_I	4.330	1.00
145_I	152_A	3.614	1.00
174_Q	203_I	3.190	1.00
93_D	97_E	2.922	1.00
171_L	201_C	2.799	1.00
194_V	201_C	2.709	1.00
170_D	200_K	2.608	1.00
81_Q	85_A	2.599	1.00
145_I	202_Y	2.550	1.00
100_K	103_N	2.550	1.00
128_R	200_K	2.504	1.00
194_V	228_I	2.490	1.00
123_Y	131_K	2.389	1.00
128_R	174_Q	2.363	1.00
122_L	178_M	2.363	1.00
46_E	63_R	2.312	1.00
178_M	203_I	2.300	1.00
94_I	97_E	2.296	1.00
131_K	143_E	2.271	1.00
175_V	189_L	2.270	1.00
51_I	71_A	2.197	1.00
82_S	85_A	2.174	1.00
64_T	68_T	2.158	1.00
152_A	155_L	2.095	1.00
93_D	98_D	2.076	1.00
72_V	141_V	2.049	1.00
175_V	228_I	1.982	1.00
167_L	196_V	1.930	1.00
175_V	225_L	1.899	1.00
122_L	127_T	1.866	0.99
50_A	58_R	1.842	0.99
167_L	201_C	1.785	0.99
122_L	206_V	1.761	0.99
47_Y	72_V	1.751	0.99
74_I	139_V	1.747	0.99
123_Y	132_P	1.727	0.99
226_D	230_R	1.723	0.99
100_K	104_T	1.712	0.99
171_L	194_V	1.698	0.99
168_Y	229_N	1.691	0.99
190_S	227_N	1.672	0.99
101_V	104_T	1.659	0.99
103_N	106_Q	1.632	0.99
178_M	206_V	1.605	0.98
160_D	163_I	1.565	0.98
218_I	222_K	1.545	0.98
64_T	70_Y	1.540	0.98
133_I	143_E	1.538	0.98
70_Y	133_I	1.520	0.98
36_I	40_R	1.510	0.98
53_S	58_R	1.506	0.97
114_K	118_N	1.491	0.97
173_Q	177_I	1.479	0.97
87_K	91_I	1.468	0.97
102_T	105_K	1.446	0.97
62_A	141_V	1.431	0.97
195_I	204_I	1.429	0.97
94_I	98_D	1.395	0.96
68_T	131_K	1.391	0.96
167_L	171_L	1.378	0.96
120_S	124_E	1.355	0.95
151_R	154_L	1.351	0.95
171_L	228_I	1.330	0.95
84_R	92_G	1.329	0.95
118_N	209_A	1.317	0.95
59_I	71_A	1.310	0.94
166_G	170_D	1.308	0.94
161_E	164_T	1.277	0.94
61_P	69_Y	1.277	0.94
43_N	134_L	1.264	0.93
158_L	174_Q	1.263	0.93
112_A	135_V	1.261	0.93
113_K	135_V	1.247	0.93
34_N	137_E	1.219	0.92
38_I	139_V	1.213	0.92
222_K	226_D	1.209	0.92
174_Q	177_I	1.202	0.91
100_K	105_K	1.185	0.91
75_Y	140_L	1.184	0.91
43_N	141_V	1.161	0.90
103_N	108_I	1.153	0.90
50_A	60_Y	1.148	0.89
161_E	165_Q	1.134	0.89
170_D	201_C	1.131	0.89
30_R	137_E	1.129	0.89
118_N	206_V	1.122	0.88
81_Q	84_R	1.121	0.88
41_R	134_L	1.113	0.88
163_I	199_N	1.111	0.88
128_R	170_D	1.109	0.88
39_A	47_Y	1.083	0.86
172_I	175_V	1.080	0.86
100_K	108_I	1.079	0.86
84_R	93_D	1.073	0.86
70_Y	141_V	1.071	0.86
167_L	232_F	1.066	0.85
149_G	155_L	1.063	0.85
231_F	235_K	1.059	0.85
62_A	70_Y	1.059	0.85
187_G	220_L	1.049	0.85
116_F	132_P	1.043	0.84
177_I	181_G	1.035	0.84
170_D	174_Q	1.024	0.83
104_T	107_L	1.016	0.83
135_V	138_N	1.014	0.82
146_G	197_Y	0.986	0.81
60_Y	157_E	0.975	0.80
113_K	121_R	0.973	0.80
234_N	241_P	0.972	0.80
61_P	187_G	0.966	0.79
39_A	132_P	0.963	0.79
233_E	239_I	0.962	0.79
152_A	197_Y	0.952	0.78
163_I	167_L	0.951	0.78
196_V	199_N	0.944	0.78
102_T	107_L	0.932	0.77
106_Q	109_N	0.925	0.76
64_T	67_D	0.918	0.76
204_I	208_Q	0.914	0.75
99_I	108_I	0.907	0.75
104_T	108_I	0.892	0.74
61_P	144_F	0.888	0.73
206_V	209_A	0.888	0.73
129_V	143_E	0.873	0.72
58_R	76_Y	0.867	0.71
62_A	72_V	0.866	0.71
52_S	206_V	0.866	0.71
35_L	140_L	0.859	0.71
189_L	227_N	0.857	0.71
101_V	108_I	0.848	0.70
127_T	174_Q	0.842	0.69
116_F	120_S	0.837	0.69
96_F	214_Y	0.835	0.69
109_N	113_K	0.835	0.69
78_S	81_Q	0.833	0.68
94_I	122_L	0.830	0.68
239_I	242_T	0.829	0.68
99_I	103_N	0.829	0.68
75_Y	207_G	0.828	0.68
164_T	237_I	0.825	0.68
76_Y	178_M	0.822	0.67
109_N	138_N	0.816	0.67
84_R	88_K	0.814	0.67
144_F	149_G	0.812	0.66
145_I	197_Y	0.812	0.66
126_G	129_V	0.806	0.66
118_N	190_S	0.804	0.66
33_L	137_E	0.803	0.66
173_Q	176_E	0.798	0.65
42_L	65_F	0.796	0.65
44_I	64_T	0.793	0.65
53_S	138_N	0.789	0.64
171_L	203_I	0.784	0.64
183_K	207_G	0.784	0.64
31_T	34_N	0.783	0.64
108_I	192_Y	0.782	0.63
38_I	43_N	0.778	0.63
48_L	61_P	0.776	0.63
187_G	223_R	0.766	0.62
197_Y	202_Y	0.765	0.62
44_I	74_I	0.763	0.62
168_Y	172_I	0.762	0.61
160_D	164_T	0.759	0.61
75_Y	111_W	0.746	0.60
179_V	221_L	0.745	0.60
184_L	209_A	0.743	0.59
52_S	192_Y	0.743	0.59
95_R	114_K	0.743	0.59
47_Y	62_A	0.743	0.59
102_T	108_I	0.737	0.59
58_R	79_T	0.735	0.59
44_I	102_T	0.734	0.59
105_K	140_L	0.734	0.59
201_C	228_I	0.734	0.59
44_I	216_D	0.732	0.58
114_K	184_L	0.729	0.58
161_E	238_N	0.725	0.58
121_R	184_L	0.722	0.57
223_R	227_N	0.718	0.57
172_I	181_G	0.717	0.57
44_I	72_V	0.716	0.57
185_I	212_I	0.715	0.57
33_L	109_N	0.711	0.56
163_I	166_G	0.710	0.56
92_G	95_R	0.708	0.56
191_E	228_I	0.706	0.56
32_Y	36_I	0.705	0.55
103_N	154_L	0.702	0.55
92_G	111_W	0.699	0.55
105_K	136_F	0.699	0.55
81_Q	88_K	0.694	0.54
122_L	207_G	0.689	0.54
99_I	140_L	0.685	0.53
218_I	230_R	0.678	0.53
160_D	165_Q	0.673	0.52
174_Q	189_L	0.672	0.52
133_I	192_Y	0.662	0.51
172_I	225_L	0.662	0.51
187_G	212_I	0.661	0.51
90_T	96_F	0.661	0.51
216_D	219_T	0.660	0.51
59_I	132_P	0.660	0.51
38_I	141_V	0.656	0.50
79_T	84_R	0.650	0.50
114_K	191_E	0.646	0.49
175_V	226_D	0.645	0.49
157_E	231_F	0.644	0.49
222_K	233_E	0.639	0.48
125_A	132_P	0.638	0.48
108_I	138_N	0.637	0.48
145_I	177_I	0.635	0.48
194_V	216_D	0.634	0.48
181_G	241_P	0.633	0.48
123_Y	143_E	0.630	0.47
46_E	67_D	0.630	0.47
225_L	229_N	0.629	0.47
169_E	173_Q	0.629	0.47
127_T	189_L	0.625	0.47
103_N	107_L	0.624	0.47
110_T	167_L	0.624	0.47
79_T	85_A	0.621	0.46
35_L	74_I	0.619	0.46
185_I	219_T	0.619	0.46
168_Y	238_N	0.618	0.46
57_A	121_R	0.618	0.46
35_L	221_L	0.618	0.46
165_Q	238_N	0.616	0.46
99_I	106_Q	0.613	0.46
171_L	174_Q	0.613	0.46
111_W	152_A	0.610	0.45
76_Y	138_N	0.610	0.45
172_I	229_N	0.609	0.45
122_L	129_V	0.609	0.45
87_K	99_I	0.607	0.45
55_K	188_D	0.607	0.45
143_E	198_D	0.605	0.45
177_I	239_I	0.604	0.45
151_R	206_V	0.604	0.45
154_L	203_I	0.602	0.44
111_W	118_N	0.602	0.44
38_I	46_E	0.600	0.44
166_G	199_N	0.595	0.44
168_Y	185_I	0.595	0.44
119_L	139_V	0.594	0.44
79_T	138_N	0.594	0.44
113_K	138_N	0.594	0.44
62_A	119_L	0.593	0.44
61_P	76_Y	0.592	0.43
121_R	211_P	0.591	0.43
94_I	207_G	0.588	0.43
92_G	114_K	0.586	0.43
101_V	105_K	0.584	0.43
66_D	185_I	0.576	0.42
100_K	106_Q	0.575	0.42
190_S	206_V	0.574	0.42
153_P	158_L	0.573	0.41
122_L	217_A	0.572	0.41
127_T	182_A	0.571	0.41
32_Y	35_L	0.569	0.41
56_E	188_D	0.568	0.41
203_I	239_I	0.567	0.41
60_Y	84_R	0.566	0.41
45_K	181_G	0.565	0.41
188_D	193_N	0.565	0.41
35_L	171_L	0.564	0.40
187_G	240_R	0.561	0.40
43_N	112_A	0.559	0.40
74_I	209_A	0.558	0.40
92_G	215_E	0.557	0.40
133_I	141_V	0.557	0.40
111_W	146_G	0.554	0.39
58_R	213_D	0.553	0.39
238_N	242_T	0.553	0.39
108_I	111_W	0.553	0.39
205_D	224_D	0.552	0.39
171_L	226_D	0.552	0.39
185_I	236_G	0.548	0.39
126_G	170_D	0.548	0.39
146_G	201_C	0.547	0.39
173_Q	219_T	0.542	0.38
80_A	84_R	0.540	0.38
72_V	134_L	0.539	0.38
82_S	88_K	0.537	0.38
183_K	212_I	0.535	0.38
193_N	205_D	0.534	0.37
127_T	221_L	0.534	0.37
45_K	64_T	0.534	0.37
89_Y	96_F	0.534	0.37
190_S	221_L	0.532	0.37
35_L	72_V	0.532	0.37
177_I	233_E	0.528	0.37
40_R	156_K	0.524	0.36
122_L	208_Q	0.523	0.36
47_Y	81_Q	0.523	0.36
89_Y	95_R	0.520	0.36
167_L	197_Y	0.519	0.36
122_L	171_L	0.518	0.36
118_N	184_L	0.516	0.36
101_V	179_V	0.514	0.35
168_Y	220_L	0.513	0.35
42_L	148_N	0.513	0.35
191_E	231_F	0.513	0.35
146_G	153_P	0.512	0.35
188_D	204_I	0.511	0.35
151_R	195_I	0.511	0.35
57_A	238_N	0.510	0.35
135_V	140_L	0.505	0.35
107_L	135_V	0.504	0.34
227_N	230_R	0.503	0.34
38_I	164_T	0.503	0.34
151_R	157_E	0.502	0.34
158_L	164_T	0.501	0.34
230_R	234_N	0.501	0.34
51_I	144_F	0.500	0.34
169_E	226_D	0.500	0.34
85_A	211_P	0.500	0.34

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1zthA	1	0.9331	100	0.58	Contact Map
1zarA	1	0.8701	100	0.583	Contact Map
4gyiA	1	0.9449	100	0.599	Contact Map
4otpA	1	0.7638	100	0.633	Contact Map
4pedA	1	0.9646	99.6	0.806	Contact Map
2zmdA	2	0.6811	99.6	0.815	Contact Map
4ww7A	1	0.6929	99.4	0.833	Contact Map
4bvuA	1	0.6299	99.4	0.838	Contact Map
4h05A	1	0.7244	99.4	0.839	Contact Map
2y7jA	3	0.7402	99.4	0.839	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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