Q97W46 - SULSO - GREMLIN Contacts

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Q97W46 - Uncharacterized protein

UniProt:	Q97W46	Sequences: MMRLKSQLLLVKIINNSFIVLGVEIKVPISISGIWYPVIEKENLIKSGSIGLTLTLEPYITAEIRNGSGIEFNGIEIQLPNYEILKKKLGEYKLSVYSEVPLGYGYGLSGAISLAYALGVKELTPISEEDAVNTAHLSDVLSGNGLGDVIAQYYGGGLVYRKKAGGLGYGEVEVINMDWSYYPIFSQPISQLPTKSIIKRSEIALKLIDDFLKNPSPLKFIEVAQQFTSSLGFSSEYPYSYRKKGIIVKIFEPEYGVWIKHKIASRGAYVI	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	271 (218)
Sequences:	213 (162)
Seq/√Len:	10.9

HALSA - Q9HSF9
SULSO - Q97W46

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
33_G	220_F	4.033	0.99
30_S	151_A	3.958	0.99
26_K	59_Y	3.136	0.96
39_I	47_S	3.037	0.95
40_E	46_K	2.802	0.92
226_Q	230_S	2.765	0.91
166_G	170_G	2.716	0.91
30_S	52_L	2.615	0.89
114_L	152_Q	2.586	0.88
27_V	115_A	2.522	0.87
62_A	115_A	2.518	0.87
49_S	194_T	2.475	0.86
148_D	194_T	2.445	0.85
49_S	161_R	2.427	0.85
30_S	53_T	2.356	0.83
52_L	211_F	2.290	0.81
203_I	207_L	2.127	0.76
30_S	161_R	2.125	0.76
29_I	35_W	2.061	0.73
160_Y	211_F	2.022	0.72
52_L	160_Y	1.930	0.68
62_A	96_V	1.849	0.65
53_T	151_A	1.841	0.64
62_A	200_R	1.802	0.62
148_D	161_R	1.797	0.62
25_I	119_G	1.777	0.61
102_L	112_I	1.760	0.61
85_L	117_A	1.745	0.60
151_A	161_R	1.720	0.59
143_G	198_I	1.715	0.58
30_S	49_S	1.706	0.58
133_N	168_G	1.701	0.58
35_W	59_Y	1.701	0.58
31_I	49_S	1.698	0.58
211_F	223_V	1.623	0.54
30_S	194_T	1.612	0.54
37_P	198_I	1.573	0.52
98_S	102_L	1.570	0.52
161_R	194_T	1.566	0.51
55_T	60_I	1.553	0.51
35_W	233_F	1.552	0.51
204_A	207_L	1.549	0.51
29_I	100_V	1.542	0.50
38_V	164_A	1.542	0.50
32_S	204_A	1.531	0.50
54_L	237_Y	1.513	0.49
34_I	204_A	1.506	0.49
184_I	218_L	1.504	0.48
219_K	222_E	1.503	0.48
148_D	151_A	1.477	0.47
49_S	148_D	1.465	0.47
130_D	216_S	1.435	0.45
35_W	101_P	1.420	0.44
40_E	47_S	1.385	0.43
59_Y	107_G	1.378	0.42
162_K	230_S	1.375	0.42
30_S	211_F	1.369	0.42
45_I	137_L	1.365	0.42
34_I	113_S	1.351	0.41
54_L	161_R	1.338	0.41
219_K	223_V	1.338	0.41
110_G	142_S	1.320	0.40
43_N	68_S	1.312	0.39
121_K	131_A	1.299	0.39
56_L	184_I	1.286	0.38
96_V	112_I	1.269	0.37
30_S	148_D	1.262	0.37
110_G	171_E	1.258	0.37
190_S	221_I	1.255	0.37
100_V	231_L	1.254	0.37
86_K	120_V	1.254	0.37
42_E	87_K	1.238	0.36
60_I	111_A	1.232	0.36
43_N	214_N	1.217	0.35
152_Q	207_L	1.216	0.35
107_G	224_A	1.211	0.35
32_S	161_R	1.196	0.34
54_L	171_E	1.195	0.34
31_I	161_R	1.184	0.34
106_Y	186_S	1.184	0.34
189_I	232_G	1.176	0.33
32_S	49_S	1.173	0.33
34_I	207_L	1.160	0.33
123_L	196_S	1.158	0.33
198_I	218_L	1.150	0.32
64_I	94_L	1.144	0.32
106_Y	233_F	1.136	0.32
118_L	131_A	1.116	0.31
107_G	114_L	1.107	0.30
175_I	236_E	1.105	0.30
48_G	161_R	1.097	0.30
96_V	115_A	1.088	0.30
127_S	215_P	1.083	0.30
50_I	159_V	1.082	0.29
241_Y	244_K	1.080	0.29
106_Y	119_G	1.080	0.29
61_T	95_S	1.074	0.29
131_A	170_G	1.071	0.29
38_V	140_V	1.064	0.29
39_I	88_K	1.053	0.28
114_L	132_V	1.050	0.28
44_L	178_D	1.048	0.28
31_I	58_P	1.044	0.28
29_I	56_L	1.042	0.28
42_E	178_D	1.039	0.28
214_N	219_K	1.034	0.28
29_I	107_G	1.033	0.28
42_E	125_P	1.027	0.27
212_L	215_P	1.020	0.27
57_E	207_L	1.019	0.27
228_T	234_S	1.014	0.27
71_E	95_S	1.010	0.27
84_I	137_L	1.007	0.27
137_L	141_L	1.006	0.27
73_N	225_Q	1.003	0.26
133_N	166_G	0.989	0.26
72_F	98_S	0.988	0.26
55_T	160_Y	0.986	0.26
114_L	157_G	0.974	0.25
33_G	160_Y	0.962	0.25
173_E	176_N	0.957	0.25
37_P	62_A	0.953	0.25
119_G	123_L	0.945	0.24
151_A	168_G	0.941	0.24
198_I	230_S	0.940	0.24
23_V	202_E	0.936	0.24
37_P	189_I	0.933	0.24
32_S	113_S	0.926	0.24
127_S	212_L	0.918	0.23
125_P	232_G	0.914	0.23
210_D	226_Q	0.912	0.23
166_G	193_P	0.910	0.23
104_Y	162_K	0.909	0.23
121_K	190_S	0.898	0.23
70_I	232_G	0.892	0.23
49_S	151_A	0.890	0.22
31_I	151_A	0.884	0.22
202_E	205_L	0.883	0.22
138_S	242_R	0.881	0.22
189_I	237_Y	0.877	0.22
35_W	112_I	0.877	0.22
208_I	223_V	0.874	0.22
110_G	186_S	0.871	0.22
132_V	153_Y	0.867	0.22
110_G	152_Q	0.866	0.22
25_I	187_Q	0.866	0.22
196_S	206_K	0.859	0.21
56_L	189_I	0.859	0.21
85_L	125_P	0.858	0.21
135_A	149_V	0.855	0.21
88_K	164_A	0.854	0.21
94_L	176_N	0.853	0.21
26_K	34_I	0.850	0.21
56_L	231_L	0.847	0.21
26_K	35_W	0.846	0.21
31_I	213_K	0.844	0.21
119_G	187_Q	0.839	0.21
218_L	222_E	0.828	0.20
61_T	210_D	0.825	0.20
28_P	103_G	0.823	0.20
141_L	212_L	0.820	0.20
85_L	94_L	0.817	0.20
92_Y	149_V	0.814	0.20
116_Y	173_E	0.807	0.20
64_I	119_G	0.804	0.20
26_K	54_L	0.803	0.20
29_I	59_Y	0.801	0.20
64_I	95_S	0.798	0.20
102_L	220_F	0.794	0.19
167_L	211_F	0.793	0.19
33_G	224_A	0.793	0.19
24_E	196_S	0.792	0.19
62_A	120_V	0.790	0.19
113_S	167_L	0.786	0.19
214_N	229_S	0.786	0.19
73_N	208_I	0.785	0.19
54_L	163_K	0.783	0.19
82_Y	186_S	0.778	0.19
240_S	244_K	0.776	0.19
62_A	201_S	0.775	0.19
164_A	232_G	0.775	0.19
205_L	228_T	0.771	0.19
163_K	171_E	0.763	0.18
170_G	214_N	0.763	0.18
213_K	220_F	0.763	0.18
84_I	88_K	0.759	0.18
81_N	153_Y	0.758	0.18
96_V	102_L	0.753	0.18
73_N	152_Q	0.751	0.18
61_T	97_Y	0.749	0.18
34_I	221_I	0.748	0.18
214_N	243_K	0.748	0.18
59_Y	204_A	0.748	0.18
54_L	196_S	0.746	0.18
67_G	73_N	0.745	0.18
129_E	216_S	0.742	0.18
30_S	167_L	0.737	0.18
208_I	215_P	0.736	0.18
35_W	197_I	0.736	0.18
159_V	175_I	0.736	0.18
81_N	140_V	0.734	0.18
216_S	220_F	0.734	0.18
46_K	218_L	0.730	0.18
175_I	220_F	0.726	0.17
36_Y	50_I	0.725	0.17
87_K	218_L	0.718	0.17
55_T	102_L	0.717	0.17
173_E	204_A	0.715	0.17
68_S	210_D	0.707	0.17
23_V	198_I	0.707	0.17
131_A	189_I	0.703	0.17
128_E	228_T	0.699	0.17
47_S	164_A	0.699	0.17
143_G	148_D	0.699	0.17
55_T	142_S	0.695	0.17
105_G	109_S	0.694	0.17
109_S	145_G	0.694	0.17
105_G	145_G	0.694	0.17
51_G	105_G	0.694	0.17
51_G	109_S	0.694	0.17
51_G	145_G	0.694	0.17
104_Y	189_I	0.694	0.17
104_Y	188_P	0.685	0.16
82_Y	112_I	0.683	0.16
111_A	126_I	0.672	0.16
46_K	171_E	0.671	0.16
76_E	218_L	0.670	0.16
150_I	170_G	0.668	0.16
73_N	215_P	0.667	0.16
62_A	113_S	0.664	0.16
175_I	211_F	0.660	0.16
108_L	115_A	0.657	0.16
195_K	198_I	0.646	0.15
118_L	242_R	0.642	0.15
32_S	35_W	0.642	0.15
110_G	230_S	0.638	0.15
64_I	180_S	0.637	0.15
158_L	237_Y	0.635	0.15
129_E	173_E	0.634	0.15
115_A	139_D	0.634	0.15
98_S	152_Q	0.632	0.15
110_G	138_S	0.629	0.15
184_I	236_E	0.628	0.15
50_I	104_Y	0.628	0.15
43_N	130_D	0.627	0.15
53_T	167_L	0.627	0.15
159_V	163_K	0.623	0.15
26_K	161_R	0.621	0.15
83_E	86_K	0.619	0.15
108_L	143_G	0.618	0.15
198_I	228_T	0.617	0.15
103_G	220_F	0.617	0.15
58_P	99_E	0.616	0.15
87_K	141_L	0.613	0.15
190_S	208_I	0.612	0.15
82_Y	86_K	0.611	0.14
107_G	157_G	0.611	0.14
211_F	221_I	0.611	0.14
29_I	119_G	0.610	0.14
58_P	100_V	0.610	0.14
107_G	227_F	0.609	0.14
86_K	151_A	0.609	0.14
196_S	221_I	0.609	0.14
60_I	190_S	0.605	0.14
117_A	203_I	0.603	0.14
72_F	102_L	0.602	0.14
49_S	165_G	0.598	0.14
73_N	222_E	0.596	0.14
79_L	96_V	0.591	0.14
31_I	200_R	0.591	0.14
136_H	146_L	0.590	0.14
94_L	117_A	0.590	0.14
26_K	101_P	0.589	0.14
119_G	197_I	0.588	0.14
174_V	214_N	0.586	0.14
97_Y	129_E	0.585	0.14
151_A	242_R	0.584	0.14
139_D	148_D	0.583	0.14
162_K	173_E	0.580	0.14
31_I	194_T	0.580	0.14
35_W	106_Y	0.578	0.14
92_Y	123_L	0.574	0.14
163_K	212_L	0.573	0.14
27_V	56_L	0.570	0.14
128_E	164_A	0.569	0.14
65_R	75_I	0.565	0.13
159_V	162_K	0.565	0.13
70_I	73_N	0.564	0.13
117_A	206_K	0.564	0.13
39_I	198_I	0.561	0.13
171_E	174_V	0.556	0.13
139_D	194_T	0.556	0.13
111_A	157_G	0.555	0.13
56_L	140_V	0.554	0.13
210_D	230_S	0.554	0.13
50_I	129_E	0.553	0.13
30_S	223_V	0.551	0.13
68_S	99_E	0.550	0.13
32_S	193_P	0.545	0.13
76_E	238_P	0.542	0.13
60_I	172_V	0.538	0.13
31_I	143_G	0.537	0.13
33_G	164_A	0.536	0.13
35_W	157_G	0.533	0.13
121_K	204_A	0.533	0.13
44_L	240_S	0.533	0.13
135_A	147_G	0.532	0.13
104_Y	199_K	0.530	0.13
214_N	234_S	0.530	0.13
78_Q	173_E	0.529	0.13
216_S	228_T	0.523	0.13
76_E	122_E	0.523	0.13
190_S	231_L	0.523	0.13
45_I	213_K	0.522	0.12
104_Y	170_G	0.521	0.12
103_G	224_A	0.521	0.12
65_R	178_D	0.521	0.12
121_K	126_I	0.520	0.12
36_Y	205_L	0.517	0.12
190_S	211_F	0.516	0.12
193_P	220_F	0.513	0.12
115_A	221_I	0.507	0.12
73_N	114_L	0.505	0.12
66_N	102_L	0.504	0.12
27_V	81_N	0.502	0.12
106_Y	111_A	0.501	0.12
113_S	129_E	0.500	0.12

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3pyfA	1	0.8708	99.6	0.821	Contact Map
4n3oA	2	0.8893	99.6	0.821	Contact Map
3k85A	3	0.8118	99.6	0.821	Contact Map
4hacA	2	0.8967	99.6	0.825	Contact Map
2hfsA	1	0.9077	99.6	0.826	Contact Map
3gonA	1	0.893	99.6	0.827	Contact Map
1uekA	1	0.8303	99.5	0.834	Contact Map
3k17A	3	0.893	99.5	0.834	Contact Map
4rpfA	2	0.8782	99.5	0.835	Contact Map
2oi2A	2	0.8524	99.5	0.837	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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