Q97VZ3 - SULSO - GREMLIN Contacts

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Q97VZ3 - Uncharacterized protein

UniProt:	Q97VZ3	Sequences: MLIISTSDIHSPRYLTEFFLALRELGNIKADLALLAGDLVERGEYLHFTPVYNALKNRVKQIVSIFGNEDFIENRKFYRENYSDIIWLEDEKVEIKIENRKLIIIGSEGVLEKPTLWQTSNGITEDLYMKRLEKITEMSCNSKADIKILLTHYASTFETVFGERKSVYPHLGYRVLEELSTKGKDCLPNIAIHGHAHYAKRTLSVVKSVRVYNVALPANKRIITIHTL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	228 (216)
Sequences:	254 (157)
Seq/√Len:	10.7

SULSO - Q97VZ3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
7_S	35_L	5.382	1.00
34_L	150_L	3.905	0.99
32_L	102_L	3.590	0.98
26_G	59_V	3.319	0.97
112_E	115_T	3.256	0.96
102_L	148_I	3.201	0.96
64_S	85_I	3.160	0.95
9_I	55_L	3.069	0.95
55_L	85_I	2.927	0.93
116_L	129_M	2.839	0.92
71_F	120_S	2.818	0.92
78_Y	81_N	2.657	0.89
3_I	192_I	2.484	0.85
107_S	131_R	2.445	0.84
19_F	58_R	2.350	0.82
63_V	95_I	2.344	0.82
40_V	70_D	2.318	0.81
94_E	144_A	2.273	0.79
149_L	191_A	2.153	0.76
150_L	215_A	2.024	0.71
98_E	104_I	1.992	0.69
145_D	191_A	1.961	0.68
214_V	217_P	1.925	0.67
39_L	70_D	1.924	0.67
25_L	202_T	1.867	0.64
63_V	221_R	1.862	0.64
25_L	151_T	1.796	0.61
116_L	126_D	1.784	0.61
87_W	154_A	1.759	0.59
155_S	172_G	1.752	0.59
45_Y	78_Y	1.741	0.59
105_I	110_V	1.725	0.58
117_W	177_E	1.721	0.58
3_I	180_S	1.689	0.56
49_T	95_I	1.675	0.56
3_I	32_L	1.670	0.55
63_V	192_I	1.666	0.55
136_T	182_K	1.599	0.52
16_T	54_A	1.595	0.52
30_A	155_S	1.582	0.51
18_F	216_L	1.546	0.49
63_V	76_K	1.535	0.49
90_D	135_I	1.527	0.49
43_G	159_T	1.458	0.45
13_R	32_L	1.436	0.44
159_T	172_G	1.435	0.44
64_S	87_W	1.434	0.44
71_F	79_R	1.429	0.44
48_F	52_Y	1.415	0.43
30_A	172_G	1.400	0.43
89_E	146_I	1.398	0.43
84_D	112_E	1.381	0.42
23_R	95_I	1.355	0.41
79_R	168_Y	1.343	0.40
105_I	111_L	1.304	0.38
124_T	128_Y	1.299	0.38
86_I	93_V	1.295	0.38
36_A	151_T	1.290	0.38
34_L	191_A	1.277	0.37
135_I	151_T	1.270	0.37
190_I	212_Y	1.270	0.37
104_I	125_E	1.258	0.36
63_V	137_E	1.249	0.36
43_G	172_G	1.241	0.35
102_L	192_I	1.234	0.35
53_N	71_F	1.209	0.34
12_P	56_K	1.195	0.33
195_H	213_N	1.163	0.32
197_H	213_N	1.163	0.32
16_T	53_N	1.157	0.32
177_E	206_V	1.129	0.31
140_C	192_I	1.118	0.30
157_F	177_E	1.117	0.30
151_T	191_A	1.110	0.30
80_E	95_I	1.110	0.30
61_Q	69_E	1.108	0.30
94_E	101_K	1.101	0.30
108_E	111_L	1.093	0.29
165_K	168_Y	1.089	0.29
102_L	130_K	1.085	0.29
42_R	117_W	1.081	0.29
11_S	51_V	1.076	0.29
12_P	17_E	1.074	0.29
136_T	183_G	1.073	0.29
205_V	211_V	1.066	0.28
135_I	149_L	1.066	0.28
183_G	188_P	1.062	0.28
194_G	215_A	1.058	0.28
150_L	217_P	1.053	0.28
144_A	183_G	1.049	0.28
21_A	202_T	1.036	0.27
35_L	51_V	1.033	0.27
40_V	66_F	1.031	0.27
107_S	135_I	1.028	0.27
48_F	154_A	1.022	0.27
107_S	110_V	1.020	0.27
26_G	95_I	1.020	0.27
198_Y	202_T	1.017	0.26
137_E	217_P	1.014	0.26
32_L	218_A	1.012	0.26
110_V	113_K	1.004	0.26
100_R	107_S	1.003	0.26
91_E	94_E	0.998	0.26
85_I	198_Y	0.997	0.26
80_E	96_K	0.994	0.26
94_E	143_K	0.980	0.25
149_L	179_L	0.974	0.25
13_R	63_V	0.969	0.25
201_R	212_Y	0.963	0.24
71_F	161_F	0.962	0.24
47_H	119_T	0.958	0.24
22_L	137_E	0.948	0.24
7_S	215_A	0.944	0.24
161_F	200_K	0.944	0.24
117_W	218_A	0.940	0.24
117_W	181_T	0.934	0.23
193_H	197_H	0.934	0.23
193_H	213_N	0.934	0.23
30_A	103_I	0.930	0.23
19_F	164_R	0.929	0.23
150_L	218_A	0.928	0.23
135_I	139_S	0.927	0.23
155_S	159_T	0.927	0.23
95_I	154_A	0.925	0.23
56_K	76_K	0.923	0.23
124_T	170_H	0.912	0.23
84_D	210_R	0.911	0.23
44_E	73_E	0.904	0.22
7_S	19_F	0.903	0.22
35_L	48_F	0.896	0.22
46_L	58_R	0.895	0.22
206_V	209_V	0.889	0.22
53_N	134_K	0.888	0.22
85_I	206_V	0.886	0.22
69_E	118_Q	0.885	0.22
28_I	96_K	0.884	0.22
107_S	111_L	0.883	0.22
89_E	209_V	0.880	0.22
160_V	182_K	0.878	0.22
69_E	199_A	0.873	0.21
9_I	22_L	0.866	0.21
9_I	17_E	0.862	0.21
45_Y	75_R	0.858	0.21
28_I	95_I	0.849	0.21
199_A	208_S	0.847	0.21
91_E	125_E	0.844	0.21
96_K	187_L	0.838	0.20
181_T	215_A	0.838	0.20
24_E	153_Y	0.835	0.20
122_G	149_L	0.832	0.20
31_D	171_L	0.831	0.20
181_T	206_V	0.830	0.20
140_C	179_L	0.829	0.20
142_S	219_N	0.827	0.20
161_F	221_R	0.826	0.20
156_T	177_E	0.823	0.20
49_T	180_S	0.822	0.20
31_D	35_L	0.819	0.20
122_G	191_A	0.819	0.20
99_N	105_I	0.816	0.20
71_F	104_I	0.816	0.20
166_S	215_A	0.815	0.20
9_I	12_P	0.814	0.20
204_S	210_R	0.813	0.20
169_P	178_E	0.812	0.20
70_D	139_S	0.810	0.20
50_P	206_V	0.806	0.19
61_Q	103_I	0.802	0.19
21_A	209_V	0.800	0.19
40_V	82_Y	0.799	0.19
24_E	130_K	0.792	0.19
92_K	144_A	0.789	0.19
24_E	29_K	0.778	0.19
53_N	104_I	0.777	0.19
81_N	154_A	0.769	0.18
21_A	85_I	0.768	0.18
104_I	138_M	0.766	0.18
139_S	147_K	0.757	0.18
127_L	131_R	0.756	0.18
45_Y	147_K	0.756	0.18
85_I	168_Y	0.753	0.18
3_I	134_K	0.752	0.18
47_H	118_Q	0.751	0.18
147_K	221_R	0.745	0.18
92_K	96_K	0.744	0.18
19_F	180_S	0.742	0.18
76_K	79_R	0.741	0.18
189_N	210_R	0.739	0.18
148_I	190_I	0.736	0.17
45_Y	73_E	0.735	0.17
49_T	58_R	0.728	0.17
116_L	153_Y	0.726	0.17
78_Y	149_L	0.714	0.17
32_L	125_E	0.714	0.17
6_T	212_Y	0.714	0.17
44_E	77_F	0.712	0.17
113_K	148_I	0.711	0.17
35_L	87_W	0.706	0.17
69_E	203_L	0.705	0.17
75_R	122_G	0.705	0.17
103_I	203_L	0.703	0.17
31_D	164_R	0.700	0.16
81_N	189_N	0.699	0.16
51_V	131_R	0.698	0.16
102_L	105_I	0.697	0.16
79_R	150_L	0.696	0.16
177_E	181_T	0.696	0.16
127_L	130_K	0.694	0.16
96_K	102_L	0.694	0.16
3_I	62_I	0.692	0.16
63_V	202_T	0.690	0.16
46_L	141_N	0.685	0.16
103_I	172_G	0.684	0.16
193_H	214_V	0.681	0.16
144_A	157_F	0.678	0.16
13_R	86_I	0.674	0.16
120_S	148_I	0.670	0.16
75_R	182_K	0.669	0.16
3_I	95_I	0.668	0.16
49_T	137_E	0.668	0.16
39_L	171_L	0.665	0.16
5_S	10_H	0.663	0.16
60_K	150_L	0.663	0.16
164_R	203_L	0.662	0.15
3_I	126_D	0.660	0.15
49_T	77_F	0.659	0.15
30_A	159_T	0.659	0.15
64_S	139_S	0.659	0.15
2_L	5_S	0.658	0.15
117_W	124_T	0.657	0.15
35_L	215_A	0.656	0.15
129_M	133_E	0.654	0.15
130_K	143_K	0.651	0.15
15_L	177_E	0.649	0.15
9_I	204_S	0.644	0.15
56_K	216_L	0.641	0.15
2_L	6_T	0.640	0.15
26_G	151_T	0.637	0.15
49_T	52_Y	0.634	0.15
36_A	192_I	0.630	0.15
32_L	63_V	0.626	0.15
121_N	190_I	0.624	0.15
123_I	191_A	0.622	0.15
87_W	150_L	0.619	0.14
19_F	35_L	0.613	0.14
108_E	112_E	0.606	0.14
21_A	51_V	0.603	0.14
37_G	109_G	0.600	0.14
37_G	68_N	0.600	0.14
67_G	152_H	0.600	0.14
38_D	67_G	0.600	0.14
68_N	152_H	0.600	0.14
37_G	152_H	0.600	0.14
38_D	68_N	0.600	0.14
38_D	109_G	0.600	0.14
68_N	109_G	0.600	0.14
37_G	67_G	0.600	0.14
38_D	152_H	0.600	0.14
67_G	109_G	0.600	0.14
109_G	152_H	0.600	0.14
59_V	177_E	0.599	0.14
142_S	153_Y	0.598	0.14
71_F	75_R	0.596	0.14
151_T	183_G	0.596	0.14
9_I	51_V	0.594	0.14
31_D	61_Q	0.592	0.14
96_K	99_N	0.590	0.14
2_L	147_K	0.588	0.14
34_L	147_K	0.587	0.14
6_T	33_A	0.586	0.14
34_L	187_L	0.585	0.14
102_L	107_S	0.584	0.14
111_L	174_R	0.584	0.14
65_I	135_I	0.582	0.14
99_N	102_L	0.581	0.14
126_D	148_I	0.580	0.14
130_K	209_V	0.578	0.14
63_V	104_I	0.576	0.13
168_Y	175_V	0.575	0.13
94_E	125_E	0.575	0.13
91_E	141_N	0.567	0.13
158_E	177_E	0.563	0.13
46_L	49_T	0.561	0.13
102_L	129_M	0.559	0.13
112_E	165_K	0.556	0.13
3_I	130_K	0.556	0.13
82_Y	167_V	0.555	0.13
9_I	217_P	0.555	0.13
133_E	187_L	0.553	0.13
13_R	153_Y	0.552	0.13
105_I	113_K	0.548	0.13
52_Y	72_I	0.547	0.13
90_D	151_T	0.546	0.13
154_A	171_L	0.545	0.13
113_K	210_R	0.542	0.13
181_T	205_V	0.541	0.13
111_L	153_Y	0.539	0.13
80_E	91_E	0.539	0.13
93_V	218_A	0.538	0.13
25_L	220_K	0.535	0.13
100_R	104_I	0.533	0.13
3_I	220_K	0.533	0.13
9_I	173_Y	0.531	0.13
112_E	173_Y	0.529	0.12
63_V	187_L	0.527	0.12
22_L	130_K	0.524	0.12
35_L	55_L	0.522	0.12
81_N	104_I	0.520	0.12
60_K	82_Y	0.519	0.12
35_L	99_N	0.516	0.12
24_E	142_S	0.515	0.12
84_D	181_T	0.512	0.12
132_L	176_L	0.510	0.12
158_E	190_I	0.510	0.12
87_W	212_Y	0.509	0.12
30_A	33_A	0.508	0.12
82_Y	155_S	0.507	0.12
23_R	94_E	0.506	0.12
105_I	138_M	0.505	0.12
45_Y	120_S	0.505	0.12
134_K	177_E	0.505	0.12
16_T	204_S	0.504	0.12
117_W	215_A	0.503	0.12
154_A	172_G	0.500	0.12

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4peiA	2	0.943	99.9	0.726	Contact Map
1uf3A	6	0.8947	99.9	0.728	Contact Map
2yvtA	1	0.9211	99.9	0.742	Contact Map
3d03A	5	0.9254	99.9	0.749	Contact Map
3rl5A	1	0.8684	99.9	0.75	Contact Map
3ib7A	2	0.9167	99.9	0.758	Contact Map
3iveA	1	0.943	99.9	0.762	Contact Map
4q7fA	1	0.9342	99.9	0.766	Contact Map
2nxfA	1	0.9518	99.9	0.766	Contact Map
2xmoA	1	0.9649	99.8	0.771	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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