Q97VX7 - SULSO - GREMLIN Contacts

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Q97VX7 - Uncharacterized protein

UniProt:	Q97VX7	Sequences: MERIDIASVKGGVGKSFIAYFLSKTLAASHKILLIDKDLTSTLSRVYNIKGNLLSYLTVGQSSLAYFKEVDSGLTVVNVGCSRKIKNVEPKKIADIYSGFSDHDLMIVDNPSIPSDVCLDTELQAYYTYLNEKRLDYNLILILPPNQLLLDESLAFMQLFKDYIKNELSISLGNDLVNFDVISSVINMYNPRERIDISKIKDLTSKIVKIPFKKEAIYTPFNQLNTPMEISELAKYVLEYLESR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	244 (222)
Sequences:	9502 (6178)
Seq/√Len:	414.6

ECOLI - MRP MIND BCSQ
BACSU - SALA MIND YLXH SOJ YVEL YWQD
HALSA - Q9HQJ7 Q9HQY5 Q9HHZ7 Q9HNF1 Q9HHU2 O51991 O54573 O51969 Q9HHL5
SULSO - Q97VX7 Q97WA2 Q97YM8 Q97ZW4 Q981B3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
19_A	107_I	3.871	1.00
29_S	235_K	3.529	1.00
86_K	89_E	3.489	1.00
179_F	182_I	3.316	1.00
181_V	184_S	3.095	1.00
30_H	105_L	3.055	1.00
33_L	103_H	2.756	1.00
18_I	230_I	2.692	1.00
28_A	231_S	2.547	1.00
75_T	103_H	2.515	1.00
19_A	34_L	2.315	1.00
2_E	138_N	2.259	1.00
5_D	136_D	2.231	1.00
26_L	107_I	2.139	1.00
211_P	229_E	2.135	1.00
215_E	218_Y	2.081	1.00
208_V	233_L	1.974	1.00
16_S	46_V	1.902	1.00
20_Y	43_L	1.898	1.00
25_T	234_A	1.889	1.00
26_L	105_L	1.886	1.00
187_N	191_P	1.852	1.00
206_K	209_K	1.826	1.00
76_V	81_C	1.795	1.00
2_E	137_Y	1.789	1.00
85_I	88_V	1.762	1.00
29_S	231_S	1.756	1.00
20_Y	46_V	1.732	1.00
20_Y	47_Y	1.715	1.00
84_K	87_N	1.701	1.00
23_S	107_I	1.699	1.00
185_V	188_M	1.699	1.00
171_S	175_D	1.639	1.00
224_L	227_P	1.617	1.00
34_L	43_L	1.610	1.00
67_F	70_V	1.587	1.00
95_D	99_G	1.584	1.00
171_S	174_N	1.538	1.00
75_T	101_S	1.533	1.00
46_V	148_L	1.520	1.00
182_I	186_I	1.504	1.00
196_D	199_K	1.502	1.00
49_I	76_V	1.448	1.00
178_N	185_V	1.422	1.00
42_T	152_E	1.419	1.00
91_K	94_A	1.408	1.00
181_V	186_I	1.394	1.00
197_I	200_I	1.393	1.00
141_L	157_M	1.368	1.00
33_L	106_M	1.351	1.00
126_Y	129_Y	1.332	1.00
141_L	153_S	1.327	1.00
225_N	228_M	1.325	1.00
93_I	96_I	1.316	1.00
222_N	227_P	1.310	1.00
53_L	56_Y	1.305	1.00
125_A	129_Y	1.294	1.00
18_I	173_G	1.284	1.00
158_Q	161_K	1.282	1.00
31_K	102_D	1.281	1.00
25_T	29_S	1.278	1.00
94_A	98_S	1.275	1.00
181_V	185_V	1.274	1.00
40_T	115_S	1.273	1.00
215_E	221_F	1.264	1.00
7_A	110_N	1.261	1.00
127_Y	130_L	1.261	1.00
85_I	89_E	1.259	1.00
47_Y	76_V	1.257	1.00
173_G	233_L	1.256	1.00
154_L	203_L	1.253	1.00
23_S	34_L	1.253	1.00
228_M	231_S	1.251	1.00
125_A	128_T	1.248	1.00
171_S	176_L	1.242	1.00
199_K	203_L	1.239	1.00
5_D	110_N	1.227	1.00
44_S	80_G	1.223	1.00
83_R	88_V	1.213	1.00
189_Y	192_R	1.202	1.00
139_L	160_F	1.201	1.00
63_S	67_F	1.198	1.00
51_G	54_L	1.196	1.00
60_G	63_S	1.190	1.00
196_D	201_K	1.183	1.00
83_R	87_N	1.170	1.00
198_S	201_K	1.167	1.00
57_L	60_G	1.167	1.00
182_I	185_V	1.165	1.00
186_I	189_Y	1.154	1.00
18_I	22_L	1.151	1.00
26_L	32_I	1.146	1.00
58_T	61_Q	1.137	1.00
37_K	108_V	1.136	1.00
83_R	86_K	1.126	1.00
223_Q	228_M	1.120	1.00
197_I	201_K	1.114	1.00
214_K	218_Y	1.104	1.00
174_N	177_V	1.102	1.00
200_I	203_L	1.099	1.00
92_K	96_I	1.094	1.00
77_V	81_C	1.089	1.00
84_K	88_V	1.089	1.00
18_I	142_I	1.082	1.00
172_L	176_L	1.082	1.00
103_H	106_M	1.082	1.00
27_A	74_L	1.079	1.00
3_R	108_V	1.078	1.00
174_N	178_N	1.075	1.00
176_L	212_F	1.075	1.00
213_K	226_T	1.068	1.00
184_S	188_M	1.068	1.00
47_Y	74_L	1.055	1.00
45_R	151_D	1.050	1.00
6_I	107_I	1.050	1.00
229_E	232_E	1.049	1.00
35_I	108_V	1.046	1.00
24_K	28_A	1.037	1.00
232_E	236_Y	1.035	1.00
31_K	104_D	1.034	1.00
57_L	61_Q	1.034	1.00
185_V	189_Y	1.029	1.00
17_F	216_A	1.019	1.00
186_I	190_N	1.018	1.00
198_S	209_K	1.008	1.00
7_A	156_F	1.002	1.00
22_L	237_V	1.002	1.00
232_E	235_K	1.002	1.00
172_L	175_D	0.999	1.00
228_M	232_E	0.995	1.00
30_H	104_D	0.987	1.00
23_S	43_L	0.983	1.00
175_D	178_N	0.978	1.00
90_P	97_Y	0.975	1.00
69_E	75_T	0.973	1.00
4_I	168_L	0.970	1.00
22_L	234_A	0.965	1.00
66_Y	69_E	0.959	1.00
2_E	30_H	0.958	1.00
199_K	202_D	0.953	1.00
16_S	43_L	0.950	1.00
59_V	62_S	0.942	1.00
6_I	140_I	0.939	1.00
180_D	186_I	0.937	1.00
57_L	62_S	0.937	1.00
186_I	192_R	0.937	1.00
143_L	149_L	0.933	1.00
180_D	184_S	0.930	1.00
35_I	106_M	0.912	1.00
55_S	59_V	0.903	1.00
210_I	226_T	0.896	1.00
6_I	22_L	0.895	1.00
56_Y	61_Q	0.891	1.00
188_M	192_R	0.877	1.00
184_S	192_R	0.876	1.00
168_L	171_S	0.874	1.00
138_N	166_N	0.871	1.00
183_S	189_Y	0.870	1.00
214_K	217_I	0.869	1.00
68_K	71_D	0.866	1.00
182_I	189_Y	0.864	1.00
79_V	82_S	0.864	1.00
67_F	71_D	0.859	1.00
225_N	229_E	0.859	1.00
213_K	216_A	0.859	1.00
90_P	94_A	0.855	1.00
210_I	229_E	0.851	1.00
91_K	95_D	0.850	1.00
189_Y	193_E	0.848	1.00
196_D	200_I	0.844	1.00
185_V	192_R	0.842	1.00
138_N	168_L	0.839	1.00
84_K	89_E	0.833	1.00
198_S	202_D	0.826	1.00
110_N	118_C	0.821	1.00
73_G	77_V	0.812	1.00
21_F	24_K	0.812	1.00
83_R	89_E	0.806	1.00
194_R	198_S	0.804	1.00
193_E	196_D	0.801	1.00
177_V	209_K	0.800	1.00
221_F	224_L	0.800	1.00
195_I	199_K	0.795	1.00
205_S	236_Y	0.794	1.00
59_V	63_S	0.790	1.00
165_K	168_L	0.790	1.00
226_T	229_E	0.783	1.00
91_K	96_I	0.771	1.00
182_I	188_M	0.771	1.00
56_Y	59_V	0.768	1.00
179_F	186_I	0.768	1.00
76_V	79_V	0.767	1.00
24_K	72_S	0.765	1.00
167_E	171_S	0.763	1.00
78_N	81_C	0.762	1.00
119_L	159_L	0.757	1.00
25_T	231_S	0.753	1.00
219_T	222_N	0.748	1.00
51_G	55_S	0.747	1.00
233_L	237_V	0.743	1.00
187_N	190_N	0.741	1.00
171_S	205_S	0.736	1.00
231_S	235_K	0.734	1.00
183_S	187_N	0.733	1.00
22_L	140_I	0.728	1.00
139_L	165_K	0.727	1.00
93_I	97_Y	0.722	1.00
181_V	188_M	0.721	1.00
126_Y	130_L	0.720	1.00
154_L	158_Q	0.720	1.00
39_L	117_V	0.719	1.00
70_V	75_T	0.708	1.00
90_P	93_I	0.708	1.00
216_A	226_T	0.705	1.00
4_I	138_N	0.704	1.00
7_A	153_S	0.702	1.00
180_D	183_S	0.702	1.00
92_K	95_D	0.702	1.00
44_S	78_N	0.699	1.00
42_T	148_L	0.694	1.00
213_K	224_L	0.687	1.00
190_N	194_R	0.683	1.00
77_V	100_F	0.681	1.00
181_V	192_R	0.678	1.00
220_P	223_Q	0.674	1.00
90_P	96_I	0.671	0.99
226_T	230_I	0.669	0.99
66_Y	70_V	0.668	0.99
42_T	151_D	0.668	0.99
188_M	191_P	0.665	0.99
125_A	130_L	0.665	0.99
32_I	105_L	0.664	0.99
183_S	192_R	0.663	0.99
230_I	233_L	0.662	0.99
195_I	198_S	0.658	0.99
194_R	197_I	0.658	0.99
56_Y	60_G	0.658	0.99
140_I	173_G	0.657	0.99
27_A	73_G	0.655	0.99
230_I	234_A	0.646	0.99
210_I	233_L	0.644	0.99
185_V	190_N	0.642	0.99
93_I	117_V	0.639	0.99
91_K	100_F	0.638	0.99
2_E	105_L	0.637	0.99
63_S	68_K	0.636	0.99
178_N	187_N	0.632	0.99
43_L	76_V	0.632	0.99
179_F	184_S	0.631	0.99
10_K	13_V	0.628	0.99
24_K	74_L	0.626	0.99
147_Q	150_L	0.625	0.99
185_V	209_K	0.625	0.99
61_Q	67_F	0.623	0.99
179_F	189_Y	0.620	0.99
66_Y	71_D	0.620	0.99
96_I	100_F	0.617	0.99
25_T	28_A	0.615	0.99
138_N	171_S	0.615	0.99
41_S	80_G	0.614	0.99
233_L	236_Y	0.614	0.99
58_T	63_S	0.610	0.99
92_K	99_G	0.609	0.99
144_P	176_L	0.608	0.99
74_L	78_N	0.608	0.99
184_S	187_N	0.603	0.99
192_R	196_D	0.602	0.99
193_E	197_I	0.602	0.99
227_P	231_S	0.602	0.99
52_N	56_Y	0.601	0.99
5_D	139_L	0.598	0.99
72_S	75_T	0.598	0.99
77_V	82_S	0.596	0.99
53_L	58_T	0.596	0.99
184_S	189_Y	0.594	0.99
95_D	98_S	0.592	0.99
157_M	161_K	0.591	0.99
18_I	210_I	0.588	0.99
51_G	59_V	0.585	0.99
41_S	112_S	0.582	0.99
55_S	58_T	0.578	0.98
227_P	230_I	0.572	0.98
75_T	78_N	0.572	0.98
143_L	172_L	0.570	0.98
57_L	63_S	0.569	0.98
45_R	50_K	0.568	0.98
185_V	193_E	0.565	0.98
45_R	147_Q	0.563	0.98
192_R	197_I	0.563	0.98
182_I	190_N	0.562	0.98
185_V	191_P	0.561	0.98
221_F	227_P	0.561	0.98
62_S	66_Y	0.560	0.98
3_R	7_A	0.556	0.98
75_T	79_V	0.556	0.98
183_S	190_N	0.555	0.98
172_L	177_V	0.554	0.98
143_L	194_R	0.550	0.98
94_A	99_G	0.549	0.98
151_D	158_Q	0.545	0.98
17_F	46_V	0.545	0.98
116_D	119_L	0.543	0.98
34_L	47_Y	0.543	0.98
107_I	237_V	0.542	0.98
220_P	226_T	0.542	0.98
92_K	97_Y	0.542	0.98
63_S	66_Y	0.541	0.98
4_I	105_L	0.539	0.98
171_S	177_V	0.536	0.98
6_I	19_A	0.535	0.98
62_S	67_F	0.534	0.98
156_F	160_F	0.534	0.98
186_I	193_E	0.533	0.97
144_P	149_L	0.532	0.97
180_D	185_V	0.531	0.97
90_P	100_F	0.530	0.97
141_L	156_F	0.529	0.97
73_G	78_N	0.529	0.97
54_L	57_L	0.526	0.97
206_K	210_I	0.524	0.97
204_T	208_V	0.523	0.97
183_S	186_I	0.518	0.97
195_I	200_I	0.518	0.97
173_G	176_L	0.517	0.97
192_R	195_I	0.514	0.97
90_P	128_T	0.511	0.97
196_D	202_D	0.506	0.97
151_D	155_A	0.506	0.97
140_I	233_L	0.506	0.97
195_I	202_D	0.505	0.97
13_V	149_L	0.503	0.96
28_A	219_T	0.500	0.96
93_I	100_F	0.500	0.96

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3pg5A	2	0.8525	100	0.413	Contact Map
4rz3A	2	0.9139	100	0.425	Contact Map
3kjhA	2	0.8852	100	0.427	Contact Map
1wcv1	2	0.9057	100	0.44	Contact Map
4v03A	2	0.8893	100	0.444	Contact Map
1hyqA	1	0.8852	100	0.446	Contact Map
3ea0A	2	0.8893	100	0.45	Contact Map
4pfsA	1	0.8852	100	0.45	Contact Map
5aunB	2	0.8484	100	0.451	Contact Map
1g3qA	1	0.8975	100	0.453	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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