Q97VV7 - SULSO - GREMLIN Contacts

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Q97VV7 - Ribonuleotide reductase small subunit, probable (NrdB)

UniProt:	Q97VV7	Sequences: MGMSFEEYKHEYFKSIRSGGLNWSLFPMKLYQLGKKLFWDPANIDLSKDAEDWKKLNDLEKMFIINVGSKFAAGEEAVALDLHPLIVTLVKEGRVEEVMYLEQFVYEESKHVEAFRRFFDIVNVMEDLSAYTKDLSPNYKKIFYEELPKAMWNLSRDPSPENQVRAVVTYNLIVEGVAAEGGYNIFRQITNTRKILPGLAKMVNLIATDESRHIAFGIYLITRLVKEYGEGVYKAAMDHINYLAPYAIGIFSEPTMPQVESLPFNLTNIELVDYAKKLLNTRIDAINRARRMKLEMLLPKDLDVIESW	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	308 (274)
Sequences:	2324 (979)
Seq/√Len:	59.1

ECOLI - RIR2 RIR4
BACSU - YOSP RIR2
HALSA - Q9HMU4
SULSO - Q97VV7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
256_M	272_V	4.591	1.00
58_D	61_K	3.933	1.00
280_N	293_K	3.661	1.00
44_I	114_A	3.482	1.00
252_S	276_K	3.380	1.00
62_M	66_N	3.221	1.00
237_M	289_A	3.143	1.00
165_R	239_H	2.983	1.00
241_N	291_R	2.841	1.00
57_N	60_E	2.781	1.00
245_P	291_R	2.759	1.00
297_L	300_K	2.602	1.00
173_I	244_A	2.485	1.00
168_V	240_I	2.468	1.00
248_I	292_M	2.445	1.00
241_N	289_A	2.444	1.00
241_N	283_I	2.409	1.00
238_D	242_Y	2.363	1.00
242_Y	246_Y	2.295	1.00
234_K	238_D	2.232	1.00
167_V	220_L	2.095	1.00
248_I	279_L	2.065	1.00
175_E	210_E	2.055	1.00
140_K	143_F	2.033	1.00
241_N	288_R	2.019	1.00
102_E	105_V	2.007	1.00
249_G	253_E	1.988	1.00
252_S	272_V	1.972	1.00
150_A	154_L	1.951	1.00
108_E	175_E	1.873	1.00
65_I	123_N	1.843	1.00
35_K	40_D	1.841	1.00
127_D	130_A	1.828	1.00
75_E	115_F	1.817	1.00
245_P	292_M	1.812	0.99
50_A	54_K	1.775	0.99
241_N	245_P	1.772	0.99
139_Y	142_I	1.769	0.99
46_L	117_R	1.755	0.99
148_P	151_M	1.718	0.99
52_D	55_K	1.716	0.99
210_E	213_H	1.711	0.99
298_L	301_D	1.708	0.99
190_T	196_L	1.683	0.99
130_A	134_D	1.612	0.99
240_I	288_R	1.609	0.99
128_L	131_Y	1.602	0.99
100_Y	216_F	1.594	0.99
53_W	61_K	1.593	0.99
276_K	294_L	1.590	0.99
221_I	288_R	1.582	0.99
114_A	202_M	1.572	0.99
284_D	290_R	1.567	0.99
237_M	241_N	1.551	0.98
234_K	237_M	1.546	0.98
148_P	253_E	1.542	0.98
145_E	149_K	1.539	0.98
256_M	268_N	1.527	0.98
34_G	107_E	1.517	0.98
205_L	208_T	1.514	0.98
168_V	286_I	1.512	0.98
296_M	300_K	1.508	0.98
139_Y	143_F	1.498	0.98
102_E	109_S	1.496	0.98
138_N	143_F	1.493	0.98
108_E	210_E	1.480	0.98
161_E	239_H	1.474	0.98
32_Q	42_A	1.474	0.98
24_S	94_R	1.463	0.98
65_I	127_D	1.456	0.98
41_P	114_A	1.419	0.97
239_H	242_Y	1.418	0.97
26_F	223_R	1.407	0.97
53_W	65_I	1.400	0.97
297_L	301_D	1.393	0.97
60_E	195_I	1.392	0.97
35_K	41_P	1.371	0.96
253_E	256_M	1.341	0.96
79_A	109_S	1.336	0.96
179_A	183_Y	1.323	0.96
34_G	104_F	1.317	0.96
297_L	302_L	1.314	0.96
269_I	273_D	1.311	0.95
56_L	196_L	1.286	0.95
155_S	158_P	1.286	0.95
179_A	210_E	1.273	0.95
270_E	273_D	1.266	0.95
111_H	213_H	1.260	0.94
223_R	227_E	1.243	0.94
149_K	246_Y	1.243	0.94
152_W	156_R	1.223	0.93
179_A	206_I	1.221	0.93
103_Q	107_E	1.221	0.93
30_L	98_V	1.217	0.93
184_N	255_T	1.216	0.93
245_P	249_G	1.204	0.93
262_L	269_I	1.191	0.92
273_D	294_L	1.185	0.92
103_Q	106_Y	1.181	0.92
225_V	237_M	1.172	0.92
241_N	290_R	1.165	0.92
84_P	87_V	1.156	0.91
32_Q	40_D	1.138	0.91
118_F	199_L	1.136	0.91
260_E	267_T	1.136	0.91
164_V	221_I	1.125	0.90
149_K	153_N	1.120	0.90
71_F	78_V	1.119	0.90
146_E	151_M	1.111	0.90
61_K	127_D	1.104	0.89
51_E	54_K	1.103	0.89
50_A	121_I	1.100	0.89
41_P	44_I	1.098	0.89
272_V	276_K	1.098	0.89
177_V	244_A	1.096	0.89
242_Y	249_G	1.095	0.89
229_G	232_V	1.084	0.88
184_N	300_K	1.077	0.88
201_K	205_L	1.077	0.88
158_P	161_E	1.068	0.88
230_E	233_Y	1.054	0.87
224_L	227_E	1.053	0.87
111_H	209_D	1.049	0.87
237_M	288_R	1.043	0.86
255_T	275_A	1.037	0.86
70_K	254_P	1.025	0.85
98_V	102_E	1.018	0.85
25_L	29_K	1.010	0.85
63_F	258_Q	1.008	0.84
108_E	179_A	1.002	0.84
228_Y	232_V	1.000	0.84
191_N	200_A	0.998	0.84
141_K	253_E	0.998	0.84
151_M	158_P	0.991	0.83
214_I	281_T	0.985	0.83
153_N	165_R	0.981	0.83
171_N	214_I	0.981	0.83
262_L	268_N	0.980	0.83
222_T	225_V	0.977	0.83
64_I	199_L	0.976	0.83
44_I	205_L	0.967	0.82
32_Q	113_E	0.966	0.82
165_R	236_A	0.963	0.82
54_K	124_V	0.959	0.81
28_M	32_Q	0.958	0.81
35_K	110_K	0.953	0.81
162_N	165_R	0.949	0.81
128_L	132_T	0.946	0.80
59_L	261_S	0.944	0.80
261_S	264_F	0.942	0.80
249_G	295_E	0.942	0.80
187_R	207_A	0.936	0.80
26_F	29_K	0.933	0.80
214_I	282_R	0.930	0.79
48_K	52_D	0.925	0.79
277_K	281_T	0.922	0.79
218_I	285_A	0.921	0.79
239_H	243_L	0.920	0.79
225_V	232_V	0.919	0.79
280_N	290_R	0.918	0.78
273_D	295_E	0.917	0.78
55_K	153_N	0.917	0.78
171_N	217_G	0.914	0.78
151_M	154_L	0.911	0.78
296_M	301_D	0.909	0.78
32_Q	36_K	0.905	0.77
168_V	244_A	0.904	0.77
142_I	253_E	0.904	0.77
164_V	224_L	0.902	0.77
58_D	269_I	0.899	0.77
129_S	133_K	0.896	0.77
155_S	159_S	0.895	0.77
183_Y	213_H	0.888	0.76
46_L	202_M	0.888	0.76
149_K	152_W	0.886	0.76
175_E	179_A	0.885	0.76
41_P	117_R	0.880	0.75
183_Y	210_E	0.879	0.75
249_G	252_S	0.868	0.74
221_I	286_I	0.865	0.74
141_K	144_Y	0.862	0.74
186_F	203_V	0.858	0.74
276_K	292_M	0.850	0.73
99_M	109_S	0.846	0.73
176_G	282_R	0.845	0.72
59_L	262_L	0.841	0.72
181_G	275_A	0.840	0.72
83_H	86_I	0.839	0.72
48_K	51_E	0.836	0.72
63_F	185_I	0.834	0.71
116_R	120_D	0.831	0.71
191_N	204_N	0.829	0.71
175_E	183_Y	0.829	0.71
57_N	272_V	0.827	0.71
175_E	213_H	0.825	0.71
54_K	242_Y	0.822	0.70
61_K	65_I	0.817	0.70
145_E	148_P	0.816	0.70
75_E	199_L	0.814	0.70
223_R	226_K	0.810	0.69
290_R	293_K	0.806	0.69
146_E	154_L	0.805	0.69
41_P	110_K	0.804	0.69
138_N	142_I	0.803	0.69
276_K	280_N	0.802	0.68
45_D	48_K	0.801	0.68
231_G	234_K	0.801	0.68
82_L	104_F	0.799	0.68
150_A	153_N	0.798	0.68
75_E	209_D	0.797	0.68
27_P	223_R	0.796	0.68
157_D	161_E	0.794	0.68
225_V	228_Y	0.790	0.67
26_F	219_Y	0.788	0.67
30_L	215_A	0.788	0.67
159_S	162_N	0.788	0.67
224_L	228_Y	0.786	0.67
142_I	146_E	0.780	0.66
141_K	145_E	0.776	0.66
38_F	103_Q	0.774	0.66
152_W	155_S	0.772	0.66
79_A	105_V	0.771	0.65
55_K	195_I	0.768	0.65
173_I	247_A	0.766	0.65
40_D	110_K	0.765	0.65
31_Y	113_E	0.763	0.65
128_L	133_K	0.756	0.64
102_E	239_H	0.755	0.64
278_L	282_R	0.754	0.64
75_E	179_A	0.752	0.63
55_K	58_D	0.749	0.63
126_E	130_A	0.749	0.63
289_A	293_K	0.749	0.63
269_I	272_V	0.746	0.63
99_M	102_E	0.745	0.63
163_Q	167_V	0.741	0.62
75_E	213_H	0.733	0.61
298_L	302_L	0.731	0.61
252_S	256_M	0.727	0.61
66_N	131_Y	0.727	0.61
139_Y	144_Y	0.727	0.61
71_F	182_G	0.725	0.61
150_A	158_P	0.724	0.61
272_V	275_A	0.723	0.60
34_G	216_F	0.722	0.60
182_G	206_I	0.721	0.60
34_G	100_Y	0.717	0.60
248_I	276_K	0.717	0.60
230_E	234_K	0.716	0.60
88_T	166_A	0.712	0.59
173_I	240_I	0.711	0.59
161_E	165_R	0.711	0.59
47_S	50_A	0.706	0.59
211_S	215_A	0.704	0.58
157_D	160_P	0.704	0.58
64_I	71_F	0.702	0.58
56_L	61_K	0.702	0.58
225_V	288_R	0.697	0.58
221_I	228_Y	0.692	0.57
131_Y	134_D	0.691	0.57
89_L	163_Q	0.689	0.57
34_G	37_L	0.685	0.56
209_D	213_H	0.683	0.56
219_Y	223_R	0.683	0.56
129_S	132_T	0.682	0.56
78_V	82_L	0.680	0.56
284_D	293_K	0.677	0.55
28_M	31_Y	0.676	0.55
154_L	158_P	0.672	0.55
260_E	264_F	0.669	0.55
115_F	183_Y	0.668	0.54
177_V	181_G	0.667	0.54
158_P	162_N	0.663	0.54
38_F	106_Y	0.663	0.54
68_G	119_F	0.660	0.54
111_H	183_Y	0.657	0.53
44_I	208_T	0.654	0.53
165_R	243_L	0.653	0.53
140_K	146_E	0.653	0.53
45_D	198_G	0.653	0.53
104_F	179_A	0.649	0.52
196_L	202_M	0.649	0.52
161_E	233_Y	0.649	0.52
106_Y	110_K	0.648	0.52
93_G	227_E	0.645	0.52
46_L	198_G	0.645	0.52
124_V	127_D	0.644	0.52
130_A	133_K	0.643	0.52
179_A	213_H	0.640	0.51
264_F	273_D	0.637	0.51
27_P	219_Y	0.636	0.51
117_R	120_D	0.636	0.51
248_I	252_S	0.635	0.51
118_F	180_E	0.633	0.51
149_K	192_T	0.633	0.51
226_K	242_Y	0.633	0.51
161_E	235_A	0.632	0.50
237_M	242_Y	0.631	0.50
111_H	210_E	0.630	0.50
97_E	220_L	0.628	0.50
174_V	186_F	0.627	0.50
85_L	166_A	0.627	0.50
26_F	41_P	0.626	0.50
244_A	279_L	0.626	0.50
34_G	103_Q	0.625	0.50
145_E	150_A	0.624	0.50
27_P	97_E	0.622	0.49
75_E	277_K	0.617	0.49
56_L	263_P	0.615	0.49
176_G	214_I	0.615	0.49
54_K	59_L	0.615	0.49
51_E	253_E	0.611	0.48
251_F	254_P	0.609	0.48
173_I	243_L	0.609	0.48
183_Y	251_F	0.607	0.48
24_S	27_P	0.604	0.47
57_N	130_A	0.601	0.47
75_E	217_G	0.599	0.47
61_K	273_D	0.599	0.47
119_F	177_V	0.598	0.47
58_D	240_I	0.596	0.46
289_A	294_L	0.595	0.46
39_W	111_H	0.595	0.46
280_N	283_I	0.594	0.46
216_F	219_Y	0.592	0.46
140_K	151_M	0.588	0.46
29_K	33_L	0.587	0.45
148_P	154_L	0.586	0.45
270_E	298_L	0.585	0.45
168_V	225_V	0.584	0.45
20_G	129_S	0.582	0.45
216_F	220_L	0.582	0.45
154_L	159_S	0.580	0.45
69_S	211_S	0.577	0.44
238_D	241_N	0.576	0.44
72_A	119_F	0.575	0.44
226_K	288_R	0.574	0.44
30_L	216_F	0.572	0.44
35_K	103_Q	0.572	0.44
74_G	114_A	0.570	0.44
75_E	111_H	0.569	0.43
89_L	167_V	0.569	0.43
24_S	225_V	0.568	0.43
255_T	272_V	0.568	0.43
59_L	62_M	0.565	0.43
108_E	213_H	0.564	0.43
34_G	212_R	0.563	0.43
229_G	233_Y	0.563	0.43
162_N	252_S	0.563	0.43
283_I	291_R	0.562	0.43
236_A	288_R	0.561	0.43
151_M	157_D	0.560	0.42
85_L	88_T	0.559	0.42
140_K	144_Y	0.557	0.42
102_E	106_Y	0.557	0.42
28_M	113_E	0.555	0.42
267_T	270_E	0.553	0.42
97_E	216_F	0.552	0.42
24_S	223_R	0.552	0.42
55_K	289_A	0.552	0.42
66_N	275_A	0.551	0.41
161_E	236_A	0.548	0.41
221_I	289_A	0.546	0.41
74_G	78_V	0.545	0.41
44_I	198_G	0.545	0.41
64_I	196_L	0.543	0.41
221_I	236_A	0.542	0.41
103_Q	109_S	0.541	0.40
55_K	156_R	0.541	0.40
173_I	274_Y	0.540	0.40
115_F	213_H	0.539	0.40
26_F	224_L	0.538	0.40
146_E	155_S	0.537	0.40
38_F	74_G	0.537	0.40
168_V	236_A	0.537	0.40
248_I	293_K	0.537	0.40
276_K	296_M	0.535	0.40
249_G	284_D	0.535	0.40
58_D	256_M	0.535	0.40
249_G	256_M	0.533	0.40
248_I	275_A	0.533	0.40
54_K	62_M	0.533	0.40
192_T	201_K	0.533	0.40
75_E	254_P	0.532	0.39
196_L	245_P	0.531	0.39
214_I	277_K	0.531	0.39
280_N	292_M	0.530	0.39
73_A	205_L	0.530	0.39
184_N	275_A	0.529	0.39
52_D	190_T	0.529	0.39
53_W	204_N	0.528	0.39
153_N	156_R	0.525	0.39
72_A	259_V	0.525	0.39
149_K	156_R	0.525	0.39
141_K	146_E	0.525	0.39
118_F	122_V	0.524	0.39
158_P	238_D	0.523	0.38
58_D	289_A	0.523	0.38
225_V	287_N	0.521	0.38
79_A	86_I	0.520	0.38
39_W	49_D	0.519	0.38
78_V	174_V	0.517	0.38
60_E	193_R	0.511	0.37
103_Q	110_K	0.511	0.37
153_N	246_Y	0.510	0.37
256_M	260_E	0.510	0.37
101_L	217_G	0.505	0.37
185_I	200_A	0.503	0.36
176_G	213_H	0.501	0.36
81_D	104_F	0.501	0.36
237_M	269_I	0.500	0.36

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1mxrA	2	0.9643	100	0.174	Contact Map
2rccA	4	0.9545	100	0.174	Contact Map
1syyA	2	0.9545	100	0.174	Contact Map
3oljA	2	0.9188	100	0.192	Contact Map
2o1zA	2	0.9091	100	0.2	Contact Map
4bmoA	2	0.9156	100	0.203	Contact Map
3n37A	2	0.9123	100	0.203	Contact Map
1jk0B	1	0.8247	100	0.206	Contact Map
3dhzA	2	0.9351	100	0.209	Contact Map
1jk0A	1	0.9253	100	0.212	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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