Q97VU9 - SULSO - GREMLIN Contacts

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Q97VU9 - Acetyl-CoA c-acetyltransferase (Acetoacetyl-CoA thiolase) (AcaB-6)

UniProt:	Q97VU9	Sequences: MIVGFAGKLYKNYEKDGIELLKEVTDEALDIAGLNYADVDGIMANIGRGSFHGNRTYLNPPAQISEYFGIKPKIIEHVQYGGPSVLSMIYRAYKAIKAGDAETILCIQGGKISHLRDNHFQKTDIIDSPFDEYIKIYDQMSPISDYAMVAYRHSKLFGTTDEQRARIAVIQRYNASYNPKALFRNPITVEDVLKSRIVSYPLHLLEIVYPIDGFHVFVVSKRSSKSALRNIDILAYGEAHWPNPPAEWDDIIYTPTTESAKRASFDLNRVDAFQLYDSFTITVMLQMEDIGLVEKGKVGQFVESHDLSFKGDVPINTGGGSLNTGQPAYMSGGVILEEALLQLNDMANGHQVKGANVIFLNGIGWWSRRHSVTLVLGERK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	380 (344)
Sequences:	15285 (8574)
Seq/√Len:	462.3

ECOLI - PAAJ ATOB YQEF FADA FADI
BACSU - THL FADA YHFS
HALSA - Q9HRI8 Q9HQZ8 Q9HNK4
SULSO - Q97VU9 Q97UA5 Q97WQ6 Q97VJ9 Q97UW8 Q97VD4 Q97WQ7 Q97VV9 Q7LXW2 Q97W61

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
170_I	174_N	3.621	1.00
224_S	228_L	3.592	1.00
163_Q	288_E	3.496	1.00
101_A	104_I	3.166	1.00
169_V	189_V	3.093	1.00
339_A	351_Q	3.060	1.00
89_I	336_L	2.975	1.00
222_R	226_S	2.961	1.00
27_E	30_D	2.948	1.00
170_I	173_Y	2.850	1.00
224_S	227_A	2.780	1.00
177_Y	181_A	2.762	1.00
155_K	200_Y	2.685	1.00
259_S	263_A	2.647	1.00
96_I	219_V	2.593	1.00
25_T	105_L	2.553	1.00
28_A	218_V	2.461	1.00
103_T	220_S	2.394	1.00
96_I	221_K	2.255	1.00
233_I	340_L	2.201	1.00
259_S	366_W	2.197	1.00
160_T	163_Q	2.188	1.00
92_A	104_I	2.158	1.00
21_L	44_A	2.135	1.00
237_G	263_A	2.131	1.00
6_A	9_L	2.127	1.00
343_L	348_N	2.120	1.00
180_K	185_N	2.103	1.00
272_A	317_T	2.085	1.00
35_N	38_D	2.060	1.00
220_S	225_K	2.013	1.00
232_D	344_N	1.993	1.00
162_E	166_R	1.976	1.00
215_H	333_G	1.918	1.00
318_G	342_Q	1.896	1.00
179_P	183_F	1.894	1.00
153_H	159_T	1.892	1.00
192_V	205_L	1.879	1.00
234_L	368_R	1.872	1.00
220_S	224_S	1.852	1.00
237_G	259_S	1.842	1.00
28_A	32_A	1.840	1.00
38_D	228_L	1.826	1.00
265_F	350_H	1.824	1.00
176_S	183_F	1.824	1.00
287_M	315_I	1.808	1.00
344_N	369_R	1.775	1.00
342_Q	346_M	1.742	1.00
257_T	261_K	1.741	1.00
102_E	221_K	1.734	1.00
287_M	294_E	1.734	1.00
270_V	273_F	1.724	1.00
256_T	354_G	1.714	1.00
191_D	194_K	1.712	1.00
271_D	348_N	1.679	1.00
102_E	224_S	1.675	1.00
217_F	333_G	1.665	1.00
147_A	199_S	1.658	1.00
92_A	219_V	1.654	1.00
221_K	224_S	1.640	1.00
44_A	107_I	1.639	1.00
156_L	247_E	1.626	1.00
265_F	270_V	1.622	1.00
267_L	273_F	1.613	1.00
76_E	91_R	1.610	1.00
95_A	101_A	1.607	1.00
21_L	64_I	1.604	1.00
169_V	173_Y	1.591	1.00
94_K	100_D	1.587	1.00
176_S	180_K	1.573	1.00
27_E	31_I	1.561	1.00
25_T	64_I	1.558	1.00
166_R	170_I	1.538	1.00
26_D	30_D	1.535	1.00
272_A	342_Q	1.530	1.00
111_K	114_H	1.517	1.00
166_R	189_V	1.515	1.00
19_E	67_Y	1.515	1.00
170_I	294_E	1.513	1.00
173_Y	186_P	1.512	1.00
254_T	257_T	1.501	1.00
131_D	134_I	1.493	1.00
103_T	224_S	1.487	1.00
273_F	352_V	1.478	1.00
342_Q	345_D	1.457	1.00
24_V	216_V	1.455	1.00
265_F	366_W	1.418	1.00
270_V	366_W	1.418	1.00
173_Y	177_Y	1.407	1.00
90_Y	365_W	1.399	1.00
258_E	261_K	1.392	1.00
24_V	214_F	1.382	1.00
260_A	267_L	1.372	1.00
239_A	259_S	1.369	1.00
15_K	23_E	1.355	1.00
337_E	341_L	1.332	1.00
7_G	11_K	1.332	1.00
293_V	314_P	1.329	1.00
239_A	258_E	1.308	1.00
151_Y	200_Y	1.307	1.00
336_L	367_S	1.306	1.00
22_K	67_Y	1.302	1.00
176_S	186_P	1.286	1.00
255_P	364_G	1.279	1.00
159_T	164_R	1.274	1.00
6_A	11_K	1.272	1.00
163_Q	166_R	1.271	1.00
60_P	109_G	1.270	1.00
223_S	227_A	1.264	1.00
257_T	289_D	1.258	1.00
72_P	244_P	1.258	1.00
89_I	217_F	1.255	1.00
352_V	366_W	1.254	1.00
40_D	101_A	1.251	1.00
83_P	363_I	1.249	1.00
44_A	216_V	1.247	1.00
340_L	344_N	1.241	1.00
317_T	342_Q	1.239	1.00
4_G	337_E	1.235	1.00
105_L	218_V	1.231	1.00
90_Y	238_E	1.230	1.00
349_G	368_R	1.229	1.00
23_E	27_E	1.219	1.00
9_L	330_M	1.210	1.00
39_V	103_T	1.204	1.00
236_Y	368_R	1.192	1.00
148_M	200_Y	1.191	1.00
46_I	49_G	1.186	1.00
250_D	253_Y	1.184	1.00
38_D	224_S	1.178	1.00
256_T	352_V	1.177	1.00
161_D	203_H	1.177	1.00
123_T	127_D	1.171	1.00
43_M	104_I	1.156	1.00
152_R	156_L	1.142	1.00
266_D	269_R	1.140	1.00
222_R	225_K	1.138	1.00
167_I	283_V	1.137	1.00
241_W	254_T	1.136	1.00
334_V	338_E	1.129	1.00
270_V	350_H	1.109	1.00
147_A	198_V	1.108	1.00
86_L	336_L	1.107	1.00
8_K	11_K	1.106	1.00
130_F	135_K	1.104	1.00
122_K	126_I	1.104	1.00
83_P	357_V	1.102	1.00
271_D	314_P	1.100	1.00
40_D	102_E	1.096	1.00
92_A	106_C	1.095	1.00
167_I	284_M	1.091	1.00
267_L	270_V	1.086	1.00
169_V	192_V	1.086	1.00
133_Y	138_D	1.083	1.00
87_S	91_R	1.078	1.00
272_A	346_M	1.074	1.00
235_A	365_W	1.071	1.00
237_G	262_R	1.071	1.00
176_S	185_N	1.068	1.00
243_N	250_D	1.065	1.00
187_I	192_V	1.064	1.00
97_K	100_D	1.063	1.00
121_Q	126_I	1.062	1.00
100_D	262_R	1.060	1.00
25_T	70_I	1.059	1.00
347_A	369_R	1.055	1.00
45_N	84_S	1.054	1.00
89_I	219_V	1.051	1.00
157_F	250_D	1.049	1.00
172_R	183_F	1.035	1.00
189_V	193_L	1.029	1.00
159_T	284_M	1.027	1.00
339_A	353_K	1.018	1.00
42_I	65_S	1.015	1.00
263_A	366_W	1.013	1.00
271_D	343_L	1.004	1.00
253_Y	257_T	1.003	1.00
136_I	139_Q	0.998	1.00
222_R	234_L	0.997	1.00
195_S	205_L	0.991	1.00
94_K	98_A	0.990	1.00
38_D	227_A	0.987	1.00
317_T	346_M	0.981	1.00
292_L	315_I	0.976	1.00
241_W	258_E	0.975	1.00
24_V	27_E	0.970	1.00
188_T	191_D	0.968	1.00
29_L	70_I	0.962	1.00
151_Y	155_K	0.958	1.00
122_K	127_D	0.956	1.00
169_V	186_P	0.951	1.00
118_N	131_D	0.950	1.00
250_D	289_D	0.946	1.00
156_L	246_A	0.941	1.00
236_Y	350_H	0.940	1.00
22_K	26_D	0.940	1.00
215_H	330_M	0.934	1.00
176_S	184_R	0.933	1.00
162_E	193_L	0.930	1.00
93_Y	235_A	0.925	1.00
4_G	28_A	0.924	1.00
5_F	337_E	0.924	1.00
196_R	204_L	0.922	1.00
195_S	203_H	0.920	1.00
247_E	250_D	0.919	1.00
258_E	262_R	0.917	1.00
173_Y	176_S	0.915	1.00
70_I	73_K	0.914	1.00
270_V	352_V	0.910	1.00
270_V	357_V	0.910	1.00
181_A	345_D	0.909	1.00
318_G	345_D	0.908	1.00
28_A	105_L	0.903	1.00
24_V	28_A	0.902	1.00
339_A	358_I	0.902	1.00
153_H	250_D	0.901	1.00
273_F	292_L	0.897	1.00
16_D	19_E	0.896	1.00
131_D	135_K	0.895	1.00
130_F	134_I	0.892	1.00
237_G	366_W	0.892	1.00
232_D	340_L	0.890	1.00
29_L	34_L	0.888	1.00
275_L	354_G	0.886	1.00
93_Y	97_K	0.880	1.00
215_H	337_E	0.877	1.00
43_M	88_M	0.869	1.00
335_I	353_K	0.863	1.00
106_C	217_F	0.862	1.00
272_A	339_A	0.862	1.00
4_G	32_A	0.858	1.00
256_T	290_I	0.858	1.00
220_S	230_N	0.857	1.00
280_T	322_L	0.849	1.00
43_M	76_E	0.847	1.00
80_Y	87_S	0.847	1.00
265_F	357_V	0.846	1.00
250_D	285_L	0.844	1.00
321_S	331_S	0.839	1.00
154_S	281_I	0.837	1.00
170_I	295_K	0.837	1.00
235_A	238_E	0.835	1.00
157_F	289_D	0.834	1.00
66_E	72_P	0.834	1.00
165_A	206_E	0.833	1.00
9_L	324_T	0.830	1.00
152_R	155_K	0.827	1.00
287_M	292_L	0.826	1.00
43_M	92_A	0.816	1.00
135_K	139_Q	0.815	1.00
350_H	368_R	0.814	1.00
153_H	285_L	0.812	1.00
88_M	333_G	0.811	1.00
175_A	183_F	0.808	1.00
42_I	73_K	0.807	1.00
44_A	61_P	0.807	1.00
336_L	365_W	0.804	1.00
132_E	135_K	0.803	1.00
5_F	341_L	0.803	1.00
40_D	258_E	0.802	1.00
21_L	107_I	0.800	1.00
17_G	109_G	0.796	1.00
187_I	191_D	0.794	1.00
243_N	251_I	0.792	1.00
130_F	133_Y	0.788	1.00
39_V	105_L	0.788	1.00
133_Y	136_I	0.787	1.00
179_P	185_N	0.787	1.00
29_L	39_V	0.787	1.00
95_A	100_D	0.785	1.00
52_H	114_H	0.784	1.00
243_N	254_T	0.783	1.00
223_S	226_S	0.783	1.00
86_L	365_W	0.782	1.00
38_D	103_T	0.778	1.00
318_G	346_M	0.776	1.00
197_I	200_Y	0.775	1.00
206_E	280_T	0.773	1.00
105_L	216_V	0.773	1.00
100_D	238_E	0.771	1.00
253_Y	289_D	0.771	1.00
28_A	216_V	0.770	1.00
150_A	281_I	0.769	1.00
283_V	287_M	0.764	1.00
123_T	126_I	0.763	1.00
131_D	138_D	0.762	1.00
339_A	360_L	0.762	1.00
41_G	95_A	0.759	1.00
174_N	177_Y	0.758	1.00
175_A	179_P	0.752	1.00
139_Q	142_P	0.751	1.00
15_K	19_E	0.750	1.00
257_T	290_I	0.749	1.00
134_I	138_D	0.747	1.00
256_T	364_G	0.744	1.00
162_E	189_V	0.744	1.00
91_R	94_K	0.736	1.00
40_D	104_I	0.730	1.00
138_D	142_P	0.730	1.00
265_F	269_R	0.729	1.00
130_F	136_I	0.729	1.00
134_I	140_M	0.729	1.00
350_H	366_W	0.728	1.00
41_G	240_H	0.728	1.00
163_Q	284_M	0.727	1.00
135_K	138_D	0.727	1.00
187_I	205_L	0.722	1.00
183_F	186_P	0.717	1.00
169_V	187_I	0.717	1.00
94_K	97_K	0.716	1.00
18_I	52_H	0.714	1.00
268_N	314_P	0.713	1.00
357_V	363_I	0.710	1.00
347_A	350_H	0.709	1.00
113_S	212_D	0.707	1.00
232_D	341_L	0.705	1.00
91_R	95_A	0.705	1.00
275_L	286_Q	0.705	1.00
169_V	191_D	0.705	1.00
124_D	127_D	0.704	1.00
220_S	228_L	0.704	1.00
46_I	52_H	0.703	1.00
23_E	26_D	0.703	1.00
46_I	60_P	0.702	1.00
149_V	248_W	0.698	1.00
148_M	152_R	0.696	1.00
177_Y	180_K	0.696	1.00
267_L	292_L	0.695	1.00
29_L	36_Y	0.695	1.00
169_V	188_T	0.694	1.00
260_A	265_F	0.691	1.00
217_F	337_E	0.689	1.00
175_A	323_N	0.688	1.00
26_D	36_Y	0.688	1.00
190_E	194_K	0.688	1.00
16_D	114_H	0.686	1.00
132_E	136_I	0.685	1.00
259_S	352_V	0.685	1.00
256_T	275_L	0.681	1.00
231_I	235_A	0.680	1.00
131_D	136_I	0.677	1.00
135_K	140_M	0.676	1.00
70_I	105_L	0.669	1.00
172_R	176_S	0.668	1.00
29_L	33_G	0.667	1.00
232_D	236_Y	0.667	1.00
134_I	137_Y	0.666	1.00
47_G	328_A	0.666	1.00
102_E	262_R	0.665	1.00
285_L	289_D	0.665	1.00
225_K	228_L	0.660	1.00
132_E	137_Y	0.660	1.00
343_L	351_Q	0.659	1.00
102_E	227_A	0.656	1.00
236_Y	263_A	0.655	1.00
80_Y	240_H	0.654	1.00
4_G	31_I	0.653	1.00
122_K	125_I	0.653	1.00
150_A	154_S	0.652	1.00
95_A	104_I	0.651	1.00
74_I	240_H	0.650	1.00
340_L	367_S	0.649	1.00
268_N	291_G	0.649	1.00
172_R	186_P	0.649	1.00
145_D	148_M	0.647	1.00
138_D	143_I	0.647	1.00
172_R	322_L	0.647	1.00
32_A	218_V	0.644	1.00
324_T	334_V	0.644	1.00
7_G	24_V	0.642	1.00
244_P	247_E	0.642	1.00
221_K	225_K	0.642	1.00
25_T	68_F	0.641	1.00
123_T	128_S	0.641	1.00
202_L	207_I	0.639	1.00
25_T	216_V	0.639	1.00
103_T	228_L	0.636	1.00
44_A	64_I	0.636	1.00
21_L	109_G	0.632	0.99
19_E	22_K	0.632	0.99
5_F	9_L	0.632	0.99
183_F	209_Y	0.631	0.99
36_Y	71_K	0.631	0.99
43_M	91_R	0.630	0.99
15_K	114_H	0.628	0.99
9_L	211_I	0.628	0.99
90_Y	363_I	0.627	0.99
76_E	87_S	0.626	0.99
159_T	163_Q	0.626	0.99
137_Y	140_M	0.623	0.99
25_T	29_L	0.623	0.99
144_S	246_A	0.623	0.99
198_V	204_L	0.619	0.99
15_K	111_K	0.618	0.99
22_K	68_F	0.618	0.99
78_V	91_R	0.617	0.99
86_L	353_K	0.615	0.99
219_V	235_A	0.614	0.99
236_Y	265_F	0.614	0.99
92_A	101_A	0.612	0.99
59_N	361_N	0.611	0.99
130_F	139_Q	0.610	0.99
112_I	328_A	0.610	0.99
256_T	267_L	0.609	0.99
283_V	315_I	0.609	0.99
130_F	137_Y	0.609	0.99
153_H	157_F	0.606	0.99
26_D	68_F	0.602	0.99
331_S	335_I	0.601	0.99
273_F	354_G	0.600	0.99
278_S	326_Q	0.600	0.99
64_I	68_F	0.600	0.99
49_G	77_H	0.600	0.99
18_I	67_Y	0.597	0.99
261_K	266_D	0.596	0.99
271_D	350_H	0.596	0.99
41_G	80_Y	0.595	0.99
7_G	20_L	0.594	0.99
89_I	106_C	0.594	0.99
134_I	139_Q	0.593	0.99
133_Y	137_Y	0.590	0.99
165_A	193_L	0.590	0.99
336_L	353_K	0.590	0.99
144_S	148_M	0.589	0.99
165_A	189_V	0.588	0.99
29_L	32_A	0.586	0.99
150_A	202_L	0.586	0.99
4_G	8_K	0.585	0.99
271_D	349_G	0.585	0.99
239_A	262_R	0.583	0.99
166_R	294_E	0.583	0.99
175_A	324_T	0.582	0.99
257_T	291_G	0.581	0.99
176_S	179_P	0.578	0.99
8_K	23_E	0.578	0.99
137_Y	141_S	0.577	0.99
320_G	323_N	0.577	0.99
245_P	248_W	0.576	0.99
133_Y	139_Q	0.576	0.99
330_M	333_G	0.576	0.99
41_G	101_A	0.576	0.99
282_T	286_Q	0.576	0.99
89_I	333_G	0.574	0.99
65_S	75_I	0.572	0.99
231_I	234_L	0.572	0.99
352_V	355_A	0.571	0.99
97_K	238_E	0.570	0.99
39_V	70_I	0.570	0.99
107_I	216_V	0.570	0.99
324_T	338_E	0.568	0.99
121_Q	124_D	0.568	0.99
168_A	280_T	0.566	0.99
284_M	288_E	0.565	0.99
119_H	126_I	0.565	0.99
189_V	192_V	0.562	0.99
357_V	361_N	0.562	0.99
26_D	69_G	0.561	0.99
65_S	70_I	0.561	0.99
159_T	288_E	0.561	0.99
136_I	140_M	0.561	0.99
260_A	263_A	0.559	0.99
88_M	106_C	0.557	0.99
14_E	114_H	0.553	0.99
147_A	201_P	0.552	0.99
9_L	334_V	0.551	0.99
43_M	78_V	0.551	0.99
259_S	270_V	0.550	0.99
233_I	343_L	0.549	0.99
133_Y	145_D	0.549	0.99
135_K	141_S	0.548	0.99
337_E	340_L	0.548	0.99
144_S	152_R	0.547	0.99
131_D	137_Y	0.546	0.98
256_T	286_Q	0.546	0.98
351_Q	367_S	0.545	0.98
40_D	73_K	0.544	0.98
7_G	23_E	0.543	0.98
42_I	105_L	0.542	0.98
333_G	337_E	0.540	0.98
240_H	363_I	0.538	0.98
170_I	283_V	0.535	0.98
168_A	172_R	0.534	0.98
255_P	259_S	0.533	0.98
132_E	138_D	0.532	0.98
157_F	285_L	0.532	0.98
287_M	293_V	0.531	0.98
157_F	247_E	0.530	0.98
43_M	95_A	0.530	0.98
174_N	294_E	0.529	0.98
87_S	95_A	0.528	0.98
64_I	109_G	0.528	0.98
87_S	90_Y	0.527	0.98
281_I	285_L	0.526	0.98
173_Y	189_V	0.525	0.98
181_A	318_G	0.523	0.98
95_A	98_A	0.521	0.98
31_I	341_L	0.521	0.98
12_N	15_K	0.521	0.98
275_L	283_V	0.520	0.98
133_Y	140_M	0.520	0.98
25_T	42_I	0.519	0.98
245_P	249_D	0.516	0.98
117_D	122_K	0.515	0.98
151_Y	202_L	0.514	0.98
34_L	218_V	0.514	0.98
177_Y	349_G	0.514	0.98
167_I	320_G	0.510	0.98
186_P	191_D	0.510	0.98
278_S	282_T	0.508	0.98
154_S	159_T	0.506	0.98
161_D	195_S	0.505	0.97
243_N	247_E	0.505	0.97
164_R	202_L	0.505	0.97
288_E	291_G	0.504	0.97
84_S	329_Y	0.502	0.97
157_F	288_E	0.500	0.97

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3zbgA	2	0.9816	100	0.236	Contact Map
4u4eA	1	0.9	100	0.308	Contact Map
4e1lA	4	0.9053	100	0.344	Contact Map
2wu9A	2	0.9053	100	0.346	Contact Map
1ulqA	4	0.9237	100	0.346	Contact Map
1wdkC	2	0.9053	100	0.346	Contact Map
2vu1A	4	0.9132	100	0.349	Contact Map
4o9aA	4	0.9158	100	0.35	Contact Map
4nzsA	4	0.9158	100	0.352	Contact Map
1wl4A	4	0.9132	100	0.352	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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