GREMLIN Database
Q97VT0 - Uncharacterized protein
UniProt: Q97VT0 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 130 (117)
Sequences: 456 (419)
Seq/√Len: 38.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
21_K119_E5.9241.00
14_L126_R4.7301.00
5_E8_K3.6401.00
16_D42_K3.5151.00
108_K112_E2.7481.00
59_D86_T2.6741.00
43_A122_I2.5981.00
23_T35_W2.4731.00
19_T23_T2.4251.00
12_Q30_Y2.2170.99
88_H106_Y2.1640.99
81_E117_K2.1600.99
31_A35_W2.0980.99
44_L60_L1.9960.99
16_D35_W1.7850.97
116_K119_E1.6110.95
12_Q106_Y1.5920.95
47_L67_I1.5700.94
40_A85_L1.5090.93
47_L75_V1.5000.93
87_L110_D1.4970.93
64_L82_V1.4550.92
14_L122_I1.4530.92
22_D26_T1.4460.92
10_F43_A1.4330.91
22_D28_H1.4320.91
15_E30_Y1.4010.90
18_A28_H1.3940.90
88_H114_L1.3620.89
60_L82_V1.3350.88
19_T31_A1.2720.85
36_A116_K1.2610.85
39_A115_V1.2520.84
19_T35_W1.2320.83
29_Y111_A1.2300.83
23_T31_A1.2050.82
84_K113_E1.1960.81
51_N67_I1.1860.81
42_K95_P1.1840.81
10_F46_A1.1840.81
107_T110_D1.1720.80
60_L86_T1.1640.80
13_A43_A1.1540.79
75_V124_W1.1470.79
86_T89_Y1.1380.78
19_T28_H1.1150.77
20_A36_A1.1110.76
78_I82_V1.0940.75
11_R104_S1.0880.75
115_V119_E1.0840.75
119_E123_E1.0780.74
72_G75_V1.0690.73
86_T91_I1.0330.71
116_K120_K1.0320.71
34_F89_Y1.0180.70
16_D23_T1.0060.69
33_A114_L1.0050.69
17_L118_A0.9970.68
81_E120_K0.9810.67
24_I33_A0.9630.65
24_I111_A0.9530.65
68_K75_V0.9320.63
85_L118_A0.9280.62
36_A118_A0.9010.60
67_I75_V0.8990.60
34_F90_T0.8970.60
78_I121_V0.8950.60
40_A121_V0.8480.56
15_E23_T0.8440.55
51_N75_V0.8440.55
21_K115_V0.8340.54
110_D114_L0.8340.54
24_I115_V0.8330.54
13_A80_S0.8250.53
16_D95_P0.8190.53
42_K56_R0.8150.53
48_L110_D0.8120.52
34_F93_R0.8090.52
23_T42_K0.7860.50
45_K58_H0.7840.50
48_L67_I0.7710.49
6_A13_A0.7630.48
18_A21_K0.7490.47
110_D117_K0.7480.47
64_L78_I0.7450.46
80_S109_E0.7390.46
17_L65_Y0.7390.46
81_E84_K0.7360.45
29_Y32_S0.7350.45
106_Y114_L0.7330.45
48_L63_L0.7320.45
15_E105_L0.7280.45
21_K25_T0.7250.44
10_F126_R0.7210.44
28_H34_F0.7200.44
15_E31_A0.7180.44
20_A115_V0.7080.43
123_E127_R0.7080.43
39_A122_I0.7050.43
112_E116_K0.7050.43
88_H92_S0.7010.42
67_I124_W0.6990.42
84_K88_H0.6990.42
65_Y82_V0.6910.41
89_Y97_A0.6900.41
24_I108_K0.6860.41
32_S111_A0.6770.40
91_I96_D0.6760.40
52_G86_T0.6750.40
37_E88_H0.6740.40
37_E111_A0.6730.40
35_W42_K0.6730.40
48_L53_K0.6720.40
89_Y92_S0.6710.40
51_N73_L0.6700.40
86_T90_T0.6670.39
9_W94_Y0.6640.39
69_E75_V0.6620.39
8_K35_W0.6530.38
84_K114_L0.6470.38
69_E77_E0.6470.38
113_E116_K0.6460.38
44_L57_T0.6440.37
40_A82_V0.6420.37
12_Q103_Y0.6410.37
82_V86_T0.6390.37
48_L66_V0.6370.37
15_E28_H0.6360.37
65_Y84_K0.6340.37
9_W95_P0.6320.36
76_E79_R0.6160.35
47_L80_S0.6120.35
16_D19_T0.6120.35
60_L87_L0.6120.35
115_V122_I0.6100.35
116_K125_V0.6070.34
52_G118_A0.6020.34
12_Q55_E0.6000.34
7_Q108_K0.5940.33
73_L120_K0.5940.33
13_A39_A0.5920.33
17_L52_G0.5890.33
25_T120_K0.5810.32
17_L21_K0.5800.32
33_A110_D0.5780.32
5_E49_I0.5730.32
15_E22_D0.5650.31
36_A111_A0.5620.31
77_E120_K0.5620.31
57_T91_I0.5600.31
34_F91_I0.5600.31
33_A88_H0.5580.30
53_K66_V0.5520.30
47_L73_L0.5520.30
83_N107_T0.5520.30
6_A50_E0.5510.30
109_E121_V0.5470.30
28_H31_A0.5450.29
82_V121_V0.5440.29
8_K49_I0.5370.29
87_L107_T0.5280.28
48_L52_G0.5280.28
47_L51_N0.5270.28
47_L125_V0.5260.28
84_K117_K0.5260.28
10_F122_I0.5250.28
37_E86_T0.5210.28
8_K57_T0.5210.28
12_Q122_I0.5210.28
32_S115_V0.5130.27
40_A60_L0.5120.27
123_E126_R0.5100.27
29_Y34_F0.5070.27
12_Q104_S0.5070.27
81_E113_E0.5060.27
94_Y127_R0.5000.26
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1ufbA 3 0.9692 100 0.283 Contact Map
3o10A 2 0.9923 100 0.284 Contact Map
1wolA 1 0.9308 100 0.31 Contact Map
1o3uA 2 0.9 100 0.351 Contact Map
4nqfA 2 0.9462 100 0.351 Contact Map
2hsbA 2 0.9308 99.9 0.419 Contact Map
2jpuA 1 0.8538 91.8 0.872 Contact Map
1knyA 2 0.8385 33.8 0.921 Contact Map
4hpqC 2 0.9462 33.3 0.921 Contact Map
3qwpA 1 0.9462 20.9 0.929 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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