Q97VQ4 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97VQ4 - Dihydrolipoamide dehydrogenase (PdhD-4)

UniProt:	Q97VQ4	Sequences: MKIAVIGSGPAGVSASLELAKNNKVVLVEKEERLGGTCVLYGCIPSKAMLHPIHLASELEKLGKNITFDLGELRKLGQDASYRLSKGVEYMLEDNGVEVIHGIASLRSGQLIVNNETIQVDYVVLATGTYREVVKGIIYSEDLPYLNKDFKSVIIVGGDVGGVEFGWMLRKLGKEVVLVDKQSSLLPYLDKEVSNAITNYFSKIGVRLYLNRSVKEMKEKEVILENGEKLTADVVYMTFGRKPSIQGFEEINHNPFVIVDEYLRTSLSNVFAAGDIIGTHTAHEAMYAGKIAATNIMGGKKVFNKQGIPKVVYTHPTIAYVGSMEGKCVKINLVELGRAITEKEIDGFLKLCIKDDKIVGAQAFMKDAEEVISLISFLIRYNIKVNEIKDYVAPHPSYIEALTELLNRL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	409 (403)
Sequences:	14913 (9878)
Seq/√Len:	492.1

ECOLI - GSHR STHA DLDH RCLA HCAD NORW DHNA
BACSU - DLDH1 DLDH3 DLDH2 YPDA CZCO
HALSA - DLDH Q9HSN0 Q9HP48 Q9HR27
SULSO - Q97VQ4 Q97VD9 Q97Z19 Q97Y24 Q97XZ3 Q97WE3 Q97YT2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
154_I	232_A	4.781	1.00
260_D	264_R	4.121	1.00
31_E	103_I	3.880	1.00
152_S	175_E	3.386	1.00
361_A	375_I	3.217	1.00
177_V	209_Y	3.007	1.00
175_E	207_R	2.898	1.00
132_E	242_K	2.819	1.00
198_T	202_S	2.743	1.00
130_Y	246_Q	2.704	1.00
323_S	328_C	2.625	1.00
15_A	124_V	2.580	1.00
374_L	393_A	2.567	1.00
356_D	386_N	2.557	1.00
120_V	123_V	2.535	1.00
130_Y	244_S	2.452	1.00
250_E	258_I	2.436	1.00
191_K	326_G	2.429	1.00
154_I	179_V	2.418	1.00
27_L	100_I	2.408	1.00
357_K	382_N	2.391	1.00
149_D	174_K	2.373	1.00
261_E	302_V	2.350	1.00
152_S	233_D	2.310	1.00
4_A	118_I	2.303	1.00
3_I	19_L	2.291	1.00
139_Y	142_D	2.282	1.00
209_Y	228_E	2.246	1.00
218_K	223_I	2.224	1.00
135_K	216_E	2.175	1.00
292_A	296_I	2.118	1.00
122_Y	269_N	2.085	1.00
378_L	383_I	2.085	1.00
252_N	256_F	2.078	1.00
4_A	29_E	2.060	1.00
216_E	223_I	2.049	1.00
183_S	211_N	2.037	1.00
107_R	117_T	2.024	1.00
363_A	368_A	2.010	1.00
11_A	273_A	2.004	1.00
130_Y	242_K	1.967	1.00
138_I	146_L	1.936	1.00
163_V	178_L	1.930	1.00
170_R	175_E	1.924	1.00
106_L	123_V	1.910	1.00
181_K	213_S	1.895	1.00
328_C	352_C	1.854	1.00
124_V	296_I	1.850	1.00
4_A	120_V	1.838	1.00
153_V	174_K	1.814	1.00
264_R	268_S	1.802	1.00
29_E	118_I	1.771	1.00
153_V	169_L	1.757	1.00
138_I	142_D	1.755	1.00
110_Q	117_T	1.754	1.00
325_E	350_K	1.750	1.00
213_S	225_E	1.748	1.00
351_L	361_A	1.746	1.00
184_S	194_S	1.720	1.00
2_K	121_D	1.717	1.00
2_K	25_V	1.707	1.00
215_K	225_E	1.706	1.00
170_R	206_V	1.689	1.00
69_D	72_E	1.678	1.00
317_T	369_E	1.673	1.00
212_R	226_N	1.660	1.00
4_A	27_L	1.648	1.00
252_N	258_I	1.645	1.00
215_K	223_I	1.639	1.00
154_I	222_V	1.632	1.00
384_K	387_E	1.623	1.00
209_Y	212_R	1.622	1.00
163_V	314_T	1.614	1.00
271_F	295_N	1.608	1.00
177_V	207_R	1.588	1.00
196_A	364_F	1.587	1.00
110_Q	119_Q	1.581	1.00
3_I	24_K	1.577	1.00
223_I	229_K	1.575	1.00
6_I	104_A	1.551	1.00
122_Y	296_I	1.547	1.00
72_E	75_K	1.541	1.00
125_L	276_I	1.526	1.00
151_K	233_D	1.515	1.00
262_Y	295_N	1.508	1.00
190_D	350_K	1.499	1.00
127_T	276_I	1.496	1.00
18_E	294_T	1.489	1.00
200_Y	203_K	1.480	1.00
55_L	58_E	1.456	1.00
263_L	277_I	1.452	1.00
138_I	143_L	1.452	1.00
146_L	150_F	1.451	1.00
138_I	234_V	1.451	1.00
34_L	99_V	1.424	1.00
179_V	230_L	1.418	1.00
142_D	145_Y	1.418	1.00
59_L	62_L	1.417	1.00
171_K	204_I	1.412	1.00
100_I	118_I	1.412	1.00
151_K	175_E	1.410	1.00
89_E	101_H	1.407	1.00
3_I	124_V	1.396	1.00
27_L	118_I	1.380	1.00
217_M	235_V	1.374	1.00
381_Y	387_E	1.368	1.00
192_E	330_K	1.367	1.00
112_I	115_N	1.347	1.00
294_T	301_K	1.345	1.00
191_K	195_N	1.344	1.00
264_R	269_N	1.343	1.00
158_G	185_L	1.340	1.00
267_L	270_V	1.338	1.00
192_E	350_K	1.338	1.00
133_V	139_Y	1.337	1.00
198_T	208_L	1.337	1.00
102_G	113_V	1.326	1.00
78_Q	82_Y	1.322	1.00
199_N	202_S	1.293	1.00
184_S	191_K	1.267	1.00
189_L	310_K	1.261	1.00
198_T	210_L	1.260	1.00
224_L	230_L	1.260	1.00
143_L	169_L	1.257	1.00
124_V	273_A	1.257	1.00
310_K	320_Y	1.247	1.00
28_V	92_L	1.244	1.00
6_I	125_L	1.231	1.00
289_G	293_A	1.228	1.00
108_S	111_L	1.227	1.00
75_K	79_D	1.224	1.00
349_L	401_A	1.224	1.00
193_V	364_F	1.224	1.00
25_V	98_E	1.219	1.00
184_S	198_T	1.216	1.00
351_L	375_I	1.214	1.00
152_S	177_V	1.208	1.00
262_Y	302_V	1.207	1.00
257_V	276_I	1.203	1.00
189_L	320_Y	1.195	1.00
319_A	372_I	1.195	1.00
74_R	78_Q	1.191	1.00
105_S	112_I	1.181	1.00
209_Y	230_L	1.176	1.00
373_S	394_P	1.175	1.00
197_I	364_F	1.175	1.00
156_V	235_V	1.172	1.00
311_V	369_E	1.172	1.00
356_D	385_V	1.163	1.00
193_V	348_F	1.159	1.00
41_Y	141_E	1.157	1.00
273_A	292_A	1.154	1.00
220_K	231_T	1.153	1.00
333_L	365_M	1.148	1.00
323_S	327_K	1.148	1.00
89_E	93_E	1.146	1.00
375_I	402_L	1.143	1.00
180_D	210_L	1.141	1.00
367_D	370_E	1.130	1.00
79_D	83_R	1.128	1.00
311_V	394_P	1.128	1.00
178_L	208_L	1.122	1.00
100_I	116_E	1.121	1.00
105_S	249_E	1.119	1.00
212_R	228_E	1.116	1.00
349_L	363_A	1.107	1.00
318_I	364_F	1.107	1.00
112_I	117_T	1.107	1.00
153_V	234_V	1.105	1.00
383_I	387_E	1.103	1.00
51_H	55_L	1.090	1.00
292_A	295_N	1.088	1.00
158_G	180_D	1.087	1.00
199_N	203_K	1.084	1.00
203_K	346_D	1.081	1.00
307_G	379_I	1.077	1.00
103_I	247_G	1.072	1.00
152_S	174_K	1.070	1.00
263_L	292_A	1.066	1.00
18_E	22_N	1.061	1.00
373_S	399_I	1.059	1.00
218_K	229_K	1.054	1.00
291_I	303_F	1.054	1.00
88_V	92_L	1.048	1.00
193_V	362_Q	1.046	1.00
258_I	266_S	1.045	1.00
154_I	230_L	1.043	1.00
324_M	327_K	1.040	1.00
156_V	237_M	1.040	1.00
321_V	379_I	1.038	1.00
137_I	217_M	1.036	1.00
152_S	231_T	1.035	1.00
132_E	239_F	1.031	1.00
17_L	95_N	1.028	1.00
185_L	210_L	1.027	1.00
106_L	125_L	1.024	1.00
106_L	120_V	1.023	1.00
123_V	270_V	1.019	1.00
8_S	34_L	1.019	1.00
179_V	224_L	1.017	1.00
156_V	239_F	1.010	1.00
325_E	352_C	1.010	1.00
196_A	200_Y	1.006	1.00
200_Y	204_I	1.006	1.00
22_N	297_M	1.004	1.00
70_L	74_R	1.003	1.00
224_L	227_G	1.000	1.00
293_A	297_M	1.000	1.00
122_Y	271_F	0.994	1.00
98_E	116_E	0.989	1.00
11_A	285_A	0.983	1.00
195_N	198_T	0.980	1.00
107_R	110_Q	0.978	1.00
212_R	224_L	0.977	1.00
29_E	104_A	0.975	1.00
196_A	199_N	0.975	1.00
185_L	198_T	0.972	1.00
24_K	121_D	0.970	1.00
56_A	60_E	0.968	1.00
264_R	271_F	0.966	1.00
24_K	297_M	0.966	1.00
202_S	207_R	0.962	1.00
197_I	318_I	0.962	1.00
32_E	41_Y	0.961	1.00
259_V	277_I	0.959	1.00
185_L	208_L	0.959	1.00
304_N	380_R	0.959	1.00
291_I	295_N	0.958	1.00
24_K	122_Y	0.957	1.00
163_V	201_F	0.946	1.00
177_V	232_A	0.945	1.00
22_N	294_T	0.938	1.00
259_V	272_A	0.938	1.00
170_R	204_I	0.934	1.00
140_S	144_P	0.932	1.00
92_L	99_V	0.929	1.00
319_A	368_A	0.929	1.00
152_S	232_A	0.927	1.00
374_L	377_F	0.922	1.00
82_Y	86_K	0.922	1.00
250_E	266_S	0.920	1.00
57_S	204_I	0.920	1.00
153_V	236_Y	0.917	1.00
207_R	228_E	0.915	1.00
71_G	147_N	0.914	1.00
57_S	61_K	0.911	1.00
138_I	150_F	0.909	1.00
243_P	256_F	0.908	1.00
74_R	77_G	0.907	1.00
141_E	144_P	0.907	1.00
358_I	375_I	0.903	1.00
109_G	267_L	0.903	1.00
148_K	234_V	0.902	1.00
264_R	295_N	0.901	1.00
19_L	24_K	0.901	1.00
54_H	58_E	0.901	1.00
18_E	21_K	0.900	1.00
38_C	43_C	0.900	1.00
162_G	180_D	0.899	1.00
294_T	299_G	0.897	1.00
328_C	359_V	0.894	1.00
336_L	339_A	0.893	1.00
182_Q	187_P	0.892	1.00
332_N	335_E	0.892	1.00
92_L	97_V	0.892	1.00
184_S	326_G	0.889	1.00
190_D	362_Q	0.889	1.00
4_A	123_V	0.888	1.00
200_Y	364_F	0.887	1.00
52_P	76_L	0.886	1.00
90_Y	94_D	0.884	1.00
272_A	276_I	0.883	1.00
71_G	75_K	0.882	1.00
124_V	292_A	0.881	1.00
338_R	341_T	0.875	1.00
330_K	348_F	0.874	1.00
317_T	367_D	0.874	1.00
201_F	206_V	0.874	1.00
245_I	251_I	0.874	1.00
262_Y	300_K	0.873	1.00
378_L	388_I	0.873	1.00
184_S	195_N	0.865	1.00
14_S	286_M	0.865	1.00
179_V	212_R	0.863	1.00
86_K	89_E	0.862	1.00
179_V	209_Y	0.860	1.00
40_L	85_S	0.856	1.00
107_R	112_I	0.855	1.00
143_L	146_L	0.852	1.00
166_G	178_L	0.851	1.00
224_L	228_E	0.850	1.00
52_P	73_L	0.849	1.00
57_S	60_E	0.847	1.00
87_G	91_M	0.846	1.00
19_L	293_A	0.845	1.00
64_K	67_T	0.845	1.00
2_K	27_L	0.844	1.00
106_L	249_E	0.843	1.00
2_K	24_K	0.841	1.00
253_H	258_I	0.838	1.00
4_A	111_L	0.838	1.00
259_V	263_L	0.838	1.00
212_R	225_E	0.838	1.00
109_G	269_N	0.833	1.00
29_E	102_G	0.832	1.00
200_Y	346_D	0.831	1.00
155_I	236_Y	0.831	1.00
156_V	214_V	0.830	1.00
357_K	384_K	0.825	1.00
77_G	81_S	0.820	1.00
8_S	28_V	0.820	1.00
4_A	112_I	0.818	1.00
140_S	143_L	0.818	1.00
380_R	390_D	0.817	1.00
50_L	168_M	0.816	1.00
24_K	296_I	0.816	1.00
358_I	379_I	0.815	1.00
195_N	199_N	0.815	1.00
155_I	162_G	0.813	1.00
46_S	50_L	0.813	1.00
337_G	341_T	0.809	1.00
105_S	247_G	0.804	1.00
264_R	267_L	0.804	1.00
183_S	191_K	0.803	1.00
324_M	362_Q	0.802	1.00
189_L	318_I	0.798	1.00
53_I	171_K	0.796	1.00
321_V	376_S	0.794	1.00
377_F	383_I	0.793	1.00
197_I	314_T	0.789	1.00
15_A	289_G	0.785	1.00
83_R	340_I	0.782	1.00
88_V	91_M	0.779	1.00
142_D	150_F	0.778	1.00
18_E	293_A	0.777	1.00
15_A	293_A	0.771	1.00
263_L	291_I	0.771	1.00
383_I	388_I	0.771	1.00
57_S	171_K	0.769	1.00
102_G	114_N	0.768	1.00
245_I	276_I	0.767	1.00
263_L	295_N	0.767	1.00
193_V	318_I	0.766	1.00
252_N	278_G	0.765	1.00
96_G	99_V	0.763	1.00
361_A	379_I	0.762	1.00
123_V	269_N	0.761	1.00
257_V	272_A	0.761	1.00
133_V	237_M	0.757	1.00
51_H	54_H	0.751	1.00
253_H	256_F	0.751	1.00
377_F	391_Y	0.750	1.00
345_I	366_K	0.745	1.00
166_G	206_V	0.742	1.00
141_E	146_L	0.740	1.00
308_I	312_V	0.739	1.00
385_V	389_K	0.735	1.00
375_I	379_I	0.734	1.00
58_E	61_K	0.734	1.00
5_V	16_S	0.734	1.00
138_I	141_E	0.733	1.00
90_Y	93_E	0.731	1.00
154_I	235_V	0.731	1.00
284_E	308_I	0.730	1.00
146_L	234_V	0.724	1.00
353_I	385_V	0.723	1.00
265_T	272_A	0.721	1.00
186_L	197_I	0.721	1.00
32_E	101_H	0.720	1.00
60_E	65_N	0.720	1.00
78_Q	145_Y	0.717	1.00
177_V	230_L	0.717	1.00
201_F	208_L	0.716	1.00
5_V	12_G	0.715	1.00
335_E	339_A	0.713	1.00
140_S	146_L	0.711	1.00
256_F	280_H	0.711	1.00
3_I	293_A	0.709	1.00
377_F	388_I	0.707	1.00
196_A	348_F	0.707	1.00
6_I	248_F	0.707	1.00
61_K	343_K	0.706	1.00
287_Y	290_K	0.705	1.00
377_F	381_Y	0.702	1.00
30_K	33_R	0.701	1.00
273_A	289_G	0.699	1.00
160_V	312_V	0.699	1.00
307_G	380_R	0.699	1.00
337_G	340_I	0.698	1.00
387_E	390_D	0.697	1.00
100_I	104_A	0.697	1.00
288_A	305_K	0.696	1.00
180_D	187_P	0.693	1.00
127_T	248_F	0.692	1.00
141_E	145_Y	0.692	1.00
139_Y	143_L	0.691	1.00
75_K	147_N	0.687	1.00
353_I	356_D	0.687	1.00
363_A	371_V	0.682	1.00
361_A	372_I	0.682	1.00
33_R	41_Y	0.681	1.00
29_E	113_V	0.681	1.00
287_Y	303_F	0.679	1.00
365_M	368_A	0.679	1.00
129_T	241_R	0.677	1.00
138_I	144_P	0.675	1.00
271_F	296_I	0.674	1.00
33_R	85_S	0.672	1.00
171_K	315_H	0.672	1.00
370_E	399_I	0.669	1.00
15_A	292_A	0.669	1.00
165_F	236_Y	0.669	1.00
353_I	358_I	0.669	1.00
162_G	181_K	0.668	1.00
380_R	391_Y	0.667	1.00
168_M	172_L	0.666	1.00
174_K	233_D	0.666	1.00
355_D	382_N	0.665	1.00
284_E	288_A	0.665	1.00
181_K	187_P	0.661	1.00
193_V	196_A	0.660	1.00
98_E	101_H	0.660	1.00
231_T	234_V	0.657	1.00
138_I	145_Y	0.657	1.00
72_E	76_L	0.654	1.00
217_M	237_M	0.652	1.00
20_A	26_V	0.652	1.00
330_K	350_K	0.651	1.00
167_W	171_K	0.651	1.00
324_M	352_C	0.650	1.00
43_C	47_K	0.649	1.00
181_K	239_F	0.648	1.00
307_G	376_S	0.647	1.00
251_I	257_V	0.647	1.00
49_M	74_R	0.647	1.00
329_V	332_N	0.641	1.00
22_N	299_G	0.640	1.00
17_L	21_K	0.640	1.00
55_L	62_L	0.640	1.00
68_F	73_L	0.638	1.00
86_K	90_Y	0.638	1.00
140_S	150_F	0.636	1.00
96_G	104_A	0.636	1.00
323_S	359_V	0.635	1.00
81_S	84_L	0.635	1.00
19_L	26_V	0.635	1.00
63_G	72_E	0.632	1.00
377_F	393_A	0.632	1.00
179_V	232_A	0.631	1.00
245_I	248_F	0.631	1.00
152_S	170_R	0.629	1.00
138_I	149_D	0.628	1.00
376_S	380_R	0.627	1.00
110_Q	269_N	0.627	1.00
315_H	366_K	0.626	1.00
194_S	198_T	0.626	1.00
344_E	366_K	0.623	1.00
47_K	50_L	0.621	1.00
20_A	97_V	0.620	1.00
333_L	401_A	0.619	1.00
277_I	288_A	0.617	1.00
139_Y	145_Y	0.615	0.99
155_I	166_G	0.615	0.99
336_L	341_T	0.615	0.99
185_L	194_S	0.613	0.99
374_L	399_I	0.613	0.99
323_S	360_G	0.611	0.99
46_S	165_F	0.611	0.99
82_Y	85_S	0.611	0.99
363_A	372_I	0.609	0.99
165_F	168_M	0.608	0.99
77_G	145_Y	0.607	0.99
163_V	208_L	0.607	0.99
78_Q	81_S	0.607	0.99
204_I	315_H	0.606	0.99
87_G	90_Y	0.604	0.99
209_Y	224_L	0.602	0.99
395_H	400_E	0.601	0.99
331_I	335_E	0.601	0.99
333_L	336_L	0.598	0.99
59_L	66_I	0.598	0.99
294_T	298_G	0.598	0.99
74_R	147_N	0.597	0.99
245_I	256_F	0.597	0.99
79_D	82_Y	0.595	0.99
11_A	126_A	0.595	0.99
311_V	319_A	0.594	0.99
250_E	255_P	0.593	0.99
113_V	118_I	0.592	0.99
144_P	150_F	0.592	0.99
361_A	402_L	0.590	0.99
50_L	54_H	0.589	0.99
167_W	201_F	0.589	0.99
21_K	95_N	0.589	0.99
71_G	74_R	0.589	0.99
160_V	310_K	0.588	0.99
320_Y	327_K	0.587	0.99
290_K	294_T	0.586	0.99
186_L	312_V	0.585	0.99
94_D	104_A	0.585	0.99
75_K	78_Q	0.584	0.99
106_L	269_N	0.584	0.99
167_W	204_I	0.583	0.99
73_L	172_L	0.582	0.99
124_V	293_A	0.580	0.99
340_I	345_I	0.579	0.99
162_G	238_T	0.579	0.99
27_L	98_E	0.579	0.99
137_I	237_M	0.577	0.99
53_I	56_A	0.577	0.99
257_V	265_T	0.577	0.99
386_N	390_D	0.576	0.99
76_L	80_A	0.574	0.99
163_V	185_L	0.573	0.99
99_V	104_A	0.572	0.99
317_T	398_Y	0.569	0.99
189_L	312_V	0.569	0.99
146_L	169_L	0.569	0.99
329_V	353_I	0.568	0.99
35_G	39_V	0.567	0.99
139_Y	144_P	0.567	0.99
320_Y	362_Q	0.565	0.99
294_T	300_K	0.563	0.99
5_V	26_V	0.562	0.99
153_V	176_V	0.562	0.99
191_K	194_S	0.561	0.99
142_D	146_L	0.560	0.99
51_H	58_E	0.560	0.99
376_S	391_Y	0.559	0.99
55_L	59_L	0.558	0.99
323_S	352_C	0.558	0.99
351_L	358_I	0.557	0.99
305_K	308_I	0.556	0.99
273_A	296_I	0.556	0.99
80_A	83_R	0.555	0.99
246_Q	249_E	0.555	0.99
15_A	19_L	0.554	0.99
95_N	104_A	0.552	0.99
291_I	301_K	0.552	0.99
70_L	73_L	0.551	0.99
91_M	94_D	0.550	0.99
126_A	273_A	0.546	0.99
250_E	253_H	0.545	0.99
131_R	139_Y	0.543	0.99
87_G	92_L	0.543	0.99
335_E	338_R	0.542	0.99
146_L	149_D	0.541	0.99
331_I	336_L	0.538	0.99
287_Y	403_T	0.538	0.99
125_L	248_F	0.538	0.99
35_G	38_C	0.536	0.99
134_V	214_V	0.536	0.99
33_R	40_L	0.535	0.99
379_I	383_I	0.534	0.99
334_V	338_R	0.534	0.99
20_A	25_V	0.534	0.99
333_L	398_Y	0.532	0.99
169_L	174_K	0.532	0.99
106_L	248_F	0.532	0.99
8_S	30_K	0.531	0.99
371_V	398_Y	0.530	0.99
36_G	39_V	0.529	0.98
212_R	230_L	0.527	0.98
212_R	215_K	0.527	0.98
286_M	403_T	0.525	0.98
98_E	104_A	0.525	0.98
251_I	258_I	0.524	0.98
372_I	394_P	0.524	0.98
115_N	118_I	0.523	0.98
81_S	85_S	0.521	0.98
48_A	80_A	0.521	0.98
111_L	119_Q	0.521	0.98
44_I	47_K	0.517	0.98
334_V	339_A	0.517	0.98
287_Y	291_I	0.517	0.98
19_L	297_M	0.517	0.98
207_R	210_L	0.517	0.98
339_A	398_Y	0.515	0.98
295_N	302_V	0.515	0.98
347_G	363_A	0.513	0.98
331_I	334_V	0.513	0.98
147_N	150_F	0.513	0.98
357_K	379_I	0.513	0.98
142_D	149_D	0.512	0.98
35_G	45_P	0.511	0.98
342_E	398_Y	0.511	0.98
71_G	148_K	0.510	0.98
110_Q	267_L	0.509	0.98
139_Y	146_L	0.509	0.98
336_L	340_I	0.508	0.98
214_V	222_V	0.508	0.98
70_L	149_D	0.508	0.98
99_V	102_G	0.507	0.98
133_V	239_F	0.507	0.98
338_R	342_E	0.507	0.98
362_Q	375_I	0.505	0.98
19_L	296_I	0.505	0.98
329_V	333_L	0.504	0.98
76_L	343_K	0.503	0.98
330_K	333_L	0.503	0.98
307_G	321_V	0.502	0.98
109_G	268_S	0.501	0.98
167_W	315_H	0.501	0.98
39_V	43_C	0.500	0.98

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1ojtA	2	1	100	0.225	Contact Map
1zmdA	4	1	100	0.232	Contact Map
3ladA	2	1	100	0.234	Contact Map
3urhA	2	1	100	0.235	Contact Map
1lvlA	2	0.9976	100	0.235	Contact Map
1xdiA	3	0.9951	100	0.239	Contact Map
3ic9A	2	0.9976	100	0.24	Contact Map
3dk9A	2	0.9927	100	0.24	Contact Map
1v59A	2	1	100	0.24	Contact Map
3o0hA	2	0.9976	100	0.244	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0125 seconds.