GREMLIN Database
Q97VP2 - Zinc-containing ferredoxin
UniProt: Q97VP2 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 104 (84)
Sequences: 361 (271)
Seq/√Len: 29.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
62_Q65_D5.4641.00
51_S54_N3.2791.00
21_K35_H2.7281.00
23_Y32_L2.2440.99
55_A86_F2.1920.98
88_M91_V2.1450.98
60_V71_A2.0900.98
85_I89_A1.8770.96
63_W71_A1.8680.95
68_G71_A1.8320.95
42_D45_L1.7900.94
74_K80_N1.7570.94
42_D100_D1.7560.94
67_P71_A1.7110.93
39_V43_F1.7060.93
61_F70_P1.6370.91
55_A59_N1.5400.88
68_G72_S1.5190.87
53_I77_D1.4990.87
55_A92_N1.4440.85
25_T28_P1.4420.84
67_P70_P1.3840.82
60_V63_W1.3130.78
69_H72_S1.2820.77
64_Y68_G1.2570.75
60_V83_A1.2550.75
47_I50_G1.2290.73
64_Y67_P1.2140.73
86_F101_V1.1940.71
65_D72_S1.1760.70
58_V85_I1.1660.69
67_P72_S1.1500.68
21_K97_A1.1410.68
19_G23_Y1.1390.68
22_V33_G1.1320.67
89_A93_V1.1210.66
40_G81_E1.0770.63
45_L100_D1.0720.63
36_G43_F1.0420.61
25_T39_V1.0400.60
65_D71_A1.0360.60
91_V101_V1.0250.59
62_Q67_P1.0140.58
39_V75_K0.9570.54
64_Y72_S0.9350.52
56_C94_C0.9310.52
90_C94_C0.9310.52
56_C90_C0.9310.52
73_E80_N0.9080.50
43_F75_K0.8970.49
76_A95_P0.8900.49
65_D68_G0.8850.48
20_H23_Y0.8670.47
26_V47_I0.8440.45
32_L97_A0.8430.45
70_P95_P0.8400.45
75_K85_I0.8280.44
65_D69_H0.8260.44
75_K78_P0.8240.44
75_K97_A0.8220.43
44_D51_S0.8120.43
60_V69_H0.8080.42
58_V61_F0.7950.41
30_G74_K0.7850.41
64_Y71_A0.7820.40
55_A89_A0.7760.40
22_V100_D0.7710.39
36_G58_V0.7640.39
31_K95_P0.7630.39
76_A81_E0.7610.39
52_C90_C0.7490.38
52_C56_C0.7490.38
52_C94_C0.7490.38
42_D102_K0.7410.37
19_G25_T0.7260.36
74_K79_V0.7190.36
28_P74_K0.6930.34
88_M101_V0.6910.34
66_T72_S0.6910.34
84_C87_C0.6900.34
60_V64_Y0.6870.33
26_V37_T0.6840.33
44_D66_T0.6790.33
42_D46_C0.6720.32
55_A58_V0.6690.32
43_F76_A0.6530.31
46_C50_G0.6410.30
27_E47_I0.6400.30
80_N83_A0.6390.30
73_E77_D0.6350.30
64_Y69_H0.6340.30
42_D91_V0.6340.30
86_F97_A0.6320.30
24_G51_S0.6270.29
24_G31_K0.6200.29
42_D92_N0.6180.29
30_G40_G0.6130.28
25_T74_K0.6060.28
61_F67_P0.6060.28
83_A99_I0.6010.28
54_N82_Q0.5940.27
24_G53_I0.5920.27
22_V59_N0.5850.27
58_V95_P0.5810.26
49_D90_C0.5800.26
49_D56_C0.5800.26
49_D94_C0.5800.26
24_G54_N0.5690.26
58_V76_A0.5680.26
88_M93_V0.5580.25
62_Q78_P0.5550.25
68_G73_E0.5520.25
23_Y26_V0.5480.24
59_N86_F0.5430.24
82_Q102_K0.5350.24
29_P38_I0.5350.24
56_C84_C0.5340.24
84_C90_C0.5340.24
84_C94_C0.5340.24
28_P38_I0.5320.23
51_S89_A0.5280.23
39_V96_V0.5190.23
74_K77_D0.5160.23
48_A77_D0.5080.22
51_S96_V0.5000.22
48_A89_A0.5000.22
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1xerA 2 0.9808 99.6 0.489 Contact Map
2gmhA 1 0.9615 99.4 0.563 Contact Map
3i9v9 1 0.8077 99.4 0.563 Contact Map
2c42A 2 1 99.4 0.566 Contact Map
3gyxB 1 0.5865 99.3 0.57 Contact Map
1hfeL 2 0.7885 99.3 0.575 Contact Map
3c8yA 1 1 99.3 0.58 Contact Map
1q16B 2 0.9327 99.3 0.581 Contact Map
4omfG 2 0.9135 99.3 0.582 Contact Map
1gteA 4 0.9231 99.3 0.584 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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