Q97VP0 - SULSO - GREMLIN Contacts

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Q97VP0 - Partial transposase ISC1058

UniProt:	Q97VP0	Sequences: MRNMNITFPETSDELEVIVDATGISTNTGGQYIVAKWGKTMDSKFLKIEIVMDNNEFNVVNAEVTSNEVESAVKTVKDLQDKGKKVKKFYGDKAYDVNEVYKTGVEVVVPPKKNASTKRHPARRKAVSEFRKLGYDRWREEKGYGVRWRVESLFSAVKRTFGESVRQVLLGK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	172 (160)
Sequences:	286 (175)
Seq/√Len:	13.8

SULSO - Q97VP0 Q97UJ1 Q97WA4 Q97XJ2 Q97Y57 Q97YB8 Q7LX34 Q97TV4 Q97US4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
45_F	95_Y	3.057	0.98
75_T	100_V	2.934	0.97
50_I	154_F	2.783	0.96
153_L	156_A	2.775	0.96
155_S	159_R	2.749	0.95
28_T	31_Q	2.605	0.94
123_R	138_W	2.512	0.92
145_G	148_W	2.273	0.88
26_T	44_K	2.247	0.87
111_P	115_A	2.219	0.87
64_V	165_V	2.208	0.86
20_D	23_G	2.046	0.82
74_K	77_K	2.022	0.81
93_K	112_K	2.013	0.80
49_E	71_S	1.972	0.79
144_Y	151_E	1.952	0.78
140_E	159_R	1.887	0.76
35_A	40_T	1.881	0.76
16_E	29_G	1.843	0.74
42_D	46_L	1.783	0.72
29_G	33_I	1.763	0.71
57_F	156_A	1.747	0.70
157_V	165_V	1.707	0.68
111_P	126_A	1.680	0.67
46_L	156_A	1.651	0.65
53_D	94_A	1.628	0.64
61_N	105_V	1.623	0.64
24_I	156_A	1.615	0.64
24_I	165_V	1.604	0.63
25_S	31_Q	1.597	0.63
142_K	145_G	1.591	0.62
44_K	67_N	1.590	0.62
27_N	44_K	1.569	0.61
36_K	102_K	1.534	0.59
33_I	149_R	1.498	0.58
57_F	153_L	1.495	0.57
167_Q	170_L	1.472	0.56
111_P	130_F	1.457	0.55
100_V	118_K	1.451	0.55
51_V	55_N	1.451	0.55
24_I	64_V	1.446	0.55
96_D	138_W	1.446	0.55
17_V	60_V	1.412	0.53
114_N	124_R	1.391	0.52
21_A	71_S	1.384	0.51
96_D	123_R	1.362	0.50
18_I	90_Y	1.356	0.50
101_Y	110_P	1.337	0.49
30_G	112_K	1.313	0.48
58_N	86_V	1.306	0.47
25_S	96_D	1.301	0.47
16_E	54_N	1.296	0.47
89_F	107_V	1.290	0.46
134_G	138_W	1.287	0.46
113_K	116_S	1.264	0.45
12_S	127_V	1.222	0.43
117_T	127_V	1.221	0.43
28_T	59_V	1.205	0.42
80_Q	85_K	1.204	0.42
152_S	155_S	1.199	0.42
118_K	145_G	1.197	0.41
107_V	126_A	1.194	0.41
156_A	165_V	1.191	0.41
123_R	134_G	1.154	0.39
22_T	48_I	1.153	0.39
144_Y	147_R	1.150	0.39
52_M	149_R	1.149	0.39
129_E	133_L	1.133	0.38
27_N	41_M	1.127	0.38
88_K	170_L	1.119	0.37
43_S	93_K	1.108	0.37
21_A	32_Y	1.080	0.36
25_S	154_F	1.078	0.35
42_D	150_V	1.064	0.35
70_E	73_V	1.061	0.35
25_S	28_T	1.054	0.34
108_V	120_H	1.048	0.34
35_A	41_M	1.047	0.34
77_K	113_K	1.047	0.34
50_I	76_V	1.041	0.34
64_V	129_E	1.016	0.32
45_F	71_S	1.013	0.32
105_V	149_R	1.011	0.32
34_V	40_T	1.009	0.32
125_K	128_S	1.008	0.32
133_L	137_R	1.004	0.32
49_E	78_D	1.003	0.32
19_V	66_S	1.002	0.32
70_E	148_W	0.996	0.31
19_V	44_K	0.994	0.31
33_I	90_Y	0.992	0.31
95_Y	110_P	0.989	0.31
17_V	51_V	0.975	0.31
18_I	54_N	0.974	0.30
74_K	89_F	0.974	0.30
93_K	96_D	0.971	0.30
74_K	113_K	0.967	0.30
153_L	167_Q	0.963	0.30
61_N	78_D	0.944	0.29
48_I	111_P	0.942	0.29
161_F	166_R	0.930	0.28
19_V	122_A	0.930	0.28
45_F	49_E	0.929	0.28
26_T	38_G	0.922	0.28
139_R	145_G	0.921	0.28
72_A	134_G	0.919	0.28
40_T	113_K	0.907	0.27
83_G	121_P	0.901	0.27
10_E	109_V	0.897	0.27
71_S	78_D	0.893	0.27
39_K	164_S	0.886	0.27
58_N	70_E	0.885	0.27
26_T	42_D	0.872	0.26
18_I	26_T	0.869	0.26
89_F	100_V	0.863	0.26
19_V	79_L	0.854	0.25
58_N	63_E	0.842	0.25
91_G	95_Y	0.837	0.25
97_V	100_V	0.837	0.25
57_F	130_F	0.830	0.24
47_K	71_S	0.828	0.24
72_A	106_E	0.823	0.24
53_D	112_K	0.822	0.24
21_A	78_D	0.817	0.24
28_T	37_W	0.812	0.24
16_E	26_T	0.809	0.23
137_R	141_E	0.803	0.23
61_N	121_P	0.799	0.23
92_D	147_R	0.790	0.23
149_R	153_L	0.790	0.23
66_S	69_V	0.789	0.23
49_E	65_T	0.787	0.23
37_W	148_W	0.786	0.23
43_S	168_V	0.786	0.23
68_E	130_F	0.778	0.22
28_T	42_D	0.777	0.22
65_T	71_S	0.775	0.22
16_E	28_T	0.771	0.22
17_V	31_Q	0.766	0.22
52_M	150_V	0.766	0.22
10_E	14_E	0.765	0.22
70_E	81_D	0.762	0.22
76_V	89_F	0.757	0.22
42_D	156_A	0.753	0.21
82_K	85_K	0.747	0.21
139_R	157_V	0.735	0.21
113_K	163_E	0.721	0.20
18_I	155_S	0.717	0.20
93_K	115_A	0.714	0.20
157_V	161_F	0.707	0.20
67_N	98_N	0.706	0.20
136_D	142_K	0.706	0.20
86_V	117_T	0.704	0.20
115_A	127_V	0.697	0.19
15_L	38_G	0.695	0.19
37_W	45_F	0.693	0.19
47_K	65_T	0.688	0.19
120_H	159_R	0.688	0.19
153_L	161_F	0.687	0.19
35_A	139_R	0.673	0.19
115_A	124_R	0.670	0.19
77_K	128_S	0.668	0.18
47_K	92_D	0.664	0.18
147_R	151_E	0.660	0.18
90_Y	108_V	0.657	0.18
61_N	164_S	0.656	0.18
50_I	70_E	0.651	0.18
56_E	120_H	0.651	0.18
128_S	131_R	0.648	0.18
30_G	86_V	0.646	0.18
113_K	121_P	0.644	0.18
147_R	158_K	0.641	0.18
29_G	146_V	0.636	0.17
25_S	42_D	0.631	0.17
136_D	139_R	0.631	0.17
53_D	108_V	0.630	0.17
28_T	46_L	0.630	0.17
54_N	149_R	0.629	0.17
28_T	96_D	0.627	0.17
77_K	82_K	0.622	0.17
162_G	165_V	0.619	0.17
106_E	120_H	0.615	0.17
33_I	139_R	0.608	0.17
61_N	79_L	0.606	0.17
41_M	133_L	0.604	0.16
61_N	94_A	0.603	0.16
30_G	53_D	0.601	0.16
50_I	88_K	0.601	0.16
56_E	107_V	0.601	0.16
15_L	143_G	0.601	0.16
20_D	110_P	0.598	0.16
72_A	122_A	0.598	0.16
36_K	72_A	0.597	0.16
28_T	32_Y	0.594	0.16
48_I	91_G	0.592	0.16
81_D	162_G	0.592	0.16
83_G	140_E	0.592	0.16
57_F	62_A	0.590	0.16
101_Y	111_P	0.588	0.16
19_V	75_T	0.588	0.16
59_V	133_L	0.584	0.16
132_K	169_L	0.584	0.16
79_L	132_K	0.582	0.16
33_I	40_T	0.579	0.16
112_K	118_K	0.577	0.16
74_K	112_K	0.571	0.16
60_V	132_K	0.570	0.15
63_E	70_E	0.568	0.15
99_E	128_S	0.564	0.15
80_Q	121_P	0.557	0.15
62_A	157_V	0.557	0.15
64_V	157_V	0.555	0.15
69_V	99_E	0.551	0.15
85_K	103_T	0.551	0.15
68_E	113_K	0.547	0.15
79_L	105_V	0.547	0.15
111_P	123_R	0.545	0.15
12_S	140_E	0.545	0.15
53_D	96_D	0.544	0.15
70_E	87_K	0.540	0.15
94_A	107_V	0.532	0.14
75_T	101_Y	0.531	0.14
67_N	128_S	0.528	0.14
12_S	170_L	0.528	0.14
12_S	15_L	0.527	0.14
102_K	105_V	0.526	0.14
11_T	14_E	0.523	0.14
27_N	156_A	0.522	0.14
97_V	169_L	0.520	0.14
79_L	143_G	0.519	0.14
21_A	44_K	0.516	0.14
78_D	95_Y	0.516	0.14
159_R	169_L	0.510	0.14
86_V	112_K	0.509	0.14
94_A	124_R	0.506	0.14
46_L	168_V	0.504	0.14
16_E	154_F	0.504	0.14
22_T	94_A	0.502	0.14
110_P	148_W	0.500	0.14
18_I	108_V	0.500	0.14

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1musA	2	0.9826	93.7	0.913	Contact Map
4fw1A	2	0.6919	43.2	0.946	Contact Map
1bcoA	1	0.8081	24.9	0.953	Contact Map
4fw2A	2	0.6686	13.8	0.958	Contact Map
1cxqA	2	0.6919	13	0.958	Contact Map
3f9kA	5	0.6919	9.8	0.961	Contact Map
1k6yA	4	0.6047	7.8	0.962	Contact Map
1c6vA	4	0.593	7.7	0.962	Contact Map
4fcyA	4	0.8663	7.4	0.963	Contact Map
3l3uA	2	0.7558	7	0.963	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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