Q97VL8 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97VL8 - ABC transporter, ABC1 family, putative

UniProt:	Q97VL8	Sequences: MIRRLLEVFFKLAPRVLAYREFRNKILKEIPIDEKEMAEEAKKFVDTLIELGPTFIKFGQILSVRPDIMPETYIKELARLQDEVPPAPFSQVSKIIDEELGNSVKILKELSSASLGQVYLGEYNGKIVAIKVNRPGIKETVNEDIQVVKKLLPLLRFVFDESFIEIIKVFLEEFSRRIFEEMDYTKEAFYLNKIKEELSDYPSLRIPSIIKATKRVLVMEYIKGYKVTSEEAKKIVDNRILAYRVFRLFMYMLLNKDYFHADPHPGNIAVDEQGNLVLYDFGMSGKIDEKTRNLLIRAYVAMIRMDADSLVRVLDELGAIQPFADRRVLAKGLRLFMQAMQGIEVSELELEDFMKLADQVFFKFPLRMPSKLVLPFRMVNVLDGTCREIDKDFDFVKSSITFLEEEGYTTKVVIEQVRELVNGIWNRFRSFLLSYSQQQELINIQSSRKGSAITNYIPQMILVITIIFYAITKDIIITLLMVILAFSISLSGRKNT	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	496 (389)
Sequences:	4909 (2980)
Seq/√Len:	151.1

ECOLI - UBIB
HALSA - Q9HP76
SULSO - Q97VL8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
99_E	215_R	4.403	1.00
192_N	211_K	4.275	1.00
120_L	127_I	4.062	1.00
234_K	238_N	3.652	1.00
116_G	184_Y	3.464	1.00
197_E	256_K	3.418	1.00
120_L	221_Y	3.148	1.00
126_K	210_I	3.141	1.00
269_A	279_Y	3.072	1.00
122_E	127_I	3.065	1.00
127_I	223_K	3.065	1.00
193_K	286_K	3.054	1.00
240_I	244_R	3.037	1.00
222_I	277_V	3.000	1.00
99_E	213_T	2.959	1.00
97_D	103_S	2.909	1.00
93_S	97_D	2.813	1.00
87_A	92_V	2.813	1.00
93_S	105_K	2.810	1.00
41_A	73_Y	2.746	1.00
271_D	277_V	2.731	1.00
188_A	211_K	2.726	1.00
126_K	208_S	2.723	1.00
271_D	275_N	2.704	1.00
71_E	75_K	2.555	1.00
149_K	175_S	2.549	1.00
191_L	209_I	2.509	1.00
45_V	76_E	2.470	1.00
110_L	129_A	2.410	1.00
239_R	390_D	2.407	1.00
129_A	221_Y	2.401	1.00
142_N	179_F	2.320	1.00
138_K	214_K	2.295	1.00
229_S	232_A	2.266	1.00
203_S	244_R	2.256	1.00
130_I	216_V	2.236	1.00
413_V	416_Q	2.229	1.00
306_D	309_S	2.220	1.00
133_N	215_R	2.211	1.00
97_D	104_V	2.150	1.00
251_Y	256_K	2.137	1.00
88_P	91_Q	2.107	1.00
205_R	220_E	2.085	1.00
288_D	291_T	2.067	1.00
42_K	76_E	2.017	1.00
128_V	218_V	1.975	1.00
102_N	106_I	1.970	1.00
209_I	219_M	1.968	1.00
133_N	184_Y	1.931	1.00
210_I	220_E	1.916	1.00
297_R	309_S	1.898	1.00
301_A	309_S	1.873	1.00
89_F	93_S	1.872	1.00
195_K	208_S	1.869	1.00
96_I	100_L	1.853	1.00
89_F	92_V	1.839	1.00
196_E	199_S	1.830	1.00
96_I	132_V	1.829	1.00
149_K	172_E	1.808	1.00
188_A	212_A	1.799	1.00
121_G	130_I	1.798	1.00
205_R	275_N	1.782	1.00
82_D	226_K	1.774	1.00
251_Y	255_N	1.767	1.00
92_V	119_Y	1.760	1.00
188_A	217_L	1.745	1.00
394_D	397_K	1.735	1.00
212_A	218_V	1.717	1.00
98_E	215_R	1.678	1.00
100_L	218_V	1.662	1.00
63_S	81_Q	1.655	1.00
166_I	169_V	1.648	1.00
185_T	214_K	1.635	1.00
201_Y	251_Y	1.635	1.00
96_I	104_V	1.634	1.00
308_D	330_A	1.625	1.00
188_A	209_I	1.619	1.00
261_A	283_M	1.605	1.00
66_P	69_M	1.590	1.00
268_I	278_L	1.587	1.00
123_Y	128_V	1.586	1.00
159_F	162_S	1.586	1.00
96_I	106_I	1.575	1.00
183_D	214_K	1.572	1.00
230_E	234_K	1.571	1.00
130_I	218_V	1.570	1.00
325_D	328_V	1.567	1.00
87_A	134_R	1.553	1.00
205_R	271_D	1.549	1.00
413_V	420_L	1.539	1.00
156_R	168_K	1.531	1.00
94_K	98_E	1.508	1.00
191_L	219_M	1.508	1.00
138_K	142_N	1.501	1.00
247_R	398_S	1.484	1.00
76_E	79_R	1.475	1.00
59_G	80_L	1.460	1.00
195_K	205_R	1.454	1.00
227_V	270_V	1.449	1.00
248_L	278_L	1.444	1.00
96_I	216_V	1.444	1.00
259_F	285_G	1.437	1.00
301_A	310_L	1.436	1.00
110_L	221_Y	1.434	1.00
223_K	272_E	1.429	1.00
192_N	195_K	1.424	1.00
156_R	166_I	1.416	1.00
121_G	128_V	1.415	1.00
107_L	218_V	1.394	1.00
91_Q	94_K	1.383	1.00
123_Y	210_I	1.345	1.00
107_L	121_G	1.339	1.00
257_D	292_R	1.319	1.00
230_E	238_N	1.319	1.00
193_K	258_Y	1.306	1.00
45_V	49_I	1.287	1.00
152_L	168_K	1.284	1.00
175_S	179_F	1.279	1.00
75_K	78_A	1.272	1.00
294_L	316_E	1.271	1.00
233_K	236_V	1.266	1.00
112_S	134_R	1.263	1.00
89_F	104_V	1.259	1.00
300_V	304_R	1.250	1.00
231_E	235_I	1.249	1.00
180_E	186_K	1.248	1.00
239_R	392_D	1.245	1.00
44_F	77_L	1.244	1.00
244_R	276_L	1.243	1.00
133_N	138_K	1.240	1.00
231_E	234_K	1.233	1.00
189_F	211_K	1.225	1.00
49_I	79_R	1.221	1.00
203_S	275_N	1.219	1.00
242_A	389_I	1.211	1.00
145_I	175_S	1.210	1.00
232_A	235_I	1.202	1.00
400_I	404_E	1.197	1.00
294_L	313_V	1.197	1.00
245_V	386_C	1.195	1.00
153_P	168_K	1.194	1.00
222_I	271_D	1.190	1.00
205_R	277_V	1.185	1.00
205_R	222_I	1.180	1.00
241_L	270_V	1.173	1.00
48_L	59_G	1.172	1.00
258_Y	284_S	1.165	1.00
416_Q	420_L	1.161	1.00
206_I	284_S	1.159	1.00
93_S	104_V	1.159	1.00
393_F	398_S	1.157	1.00
141_V	178_I	1.150	1.00
225_Y	229_S	1.149	1.00
136_G	140_T	1.143	1.00
413_V	421_V	1.142	1.00
123_Y	126_K	1.138	1.00
38_A	75_K	1.138	1.00
253_L	375_P	1.126	1.00
107_L	130_I	1.125	1.00
81_Q	226_K	1.117	0.99
92_V	132_V	1.114	0.99
301_A	313_V	1.113	0.99
346_S	392_D	1.110	0.99
103_S	106_I	1.108	0.99
106_I	218_V	1.096	0.99
100_L	107_L	1.096	0.99
208_S	220_E	1.093	0.99
312_R	326_R	1.088	0.99
248_L	252_M	1.077	0.99
298_A	310_L	1.075	0.99
233_K	237_D	1.064	0.99
69_M	74_I	1.057	0.99
291_T	371_K	1.052	0.99
203_S	247_R	1.050	0.99
46_D	49_I	1.047	0.99
44_F	73_Y	1.046	0.99
240_I	243_Y	1.041	0.99
126_K	220_E	1.040	0.99
194_I	281_F	1.037	0.99
112_S	115_L	1.031	0.99
87_A	135_P	1.023	0.99
129_A	219_M	1.020	0.99
332_G	364_F	1.017	0.99
95_I	99_E	1.013	0.99
34_E	72_T	1.012	0.99
42_K	45_V	0.993	0.99
190_Y	284_S	0.988	0.99
152_L	171_L	0.988	0.99
309_S	312_R	0.988	0.99
198_L	278_L	0.986	0.99
222_I	269_A	0.985	0.99
52_G	55_F	0.982	0.99
69_M	77_L	0.980	0.99
229_S	233_K	0.979	0.99
312_R	316_E	0.979	0.99
236_V	241_L	0.977	0.99
79_R	83_E	0.974	0.99
414_I	421_V	0.972	0.99
239_R	243_Y	0.972	0.99
405_E	409_T	0.970	0.99
170_F	373_V	0.969	0.98
42_K	79_R	0.964	0.98
138_K	215_R	0.963	0.98
198_L	252_M	0.961	0.98
118_V	129_A	0.960	0.98
53_P	383_D	0.958	0.98
62_L	69_M	0.958	0.98
414_I	418_R	0.954	0.98
81_Q	265_P	0.952	0.98
38_A	42_K	0.951	0.98
293_N	297_R	0.943	0.98
297_R	316_E	0.943	0.98
233_K	238_N	0.942	0.98
242_A	390_D	0.931	0.98
38_A	76_E	0.930	0.98
82_D	269_A	0.926	0.98
243_Y	247_R	0.925	0.98
133_N	214_K	0.924	0.98
197_E	258_Y	0.917	0.98
37_M	72_T	0.916	0.98
185_T	212_A	0.916	0.98
181_E	377_R	0.913	0.98
188_A	192_N	0.910	0.98
255_N	405_E	0.908	0.98
113_A	181_E	0.907	0.98
245_V	276_L	0.899	0.98
194_I	198_L	0.897	0.98
40_E	73_Y	0.896	0.98
120_L	129_A	0.895	0.97
185_T	189_F	0.893	0.97
278_L	284_S	0.888	0.97
56_I	84_V	0.884	0.97
261_A	374_L	0.878	0.97
198_L	248_L	0.877	0.97
193_K	197_E	0.875	0.97
206_I	281_F	0.864	0.97
39_E	43_K	0.864	0.97
255_N	402_F	0.862	0.97
100_L	216_V	0.860	0.97
81_Q	266_G	0.853	0.97
290_K	316_E	0.853	0.97
129_A	279_Y	0.851	0.97
344_E	347_E	0.846	0.96
309_S	313_V	0.844	0.96
186_K	190_Y	0.844	0.96
325_D	333_L	0.830	0.96
204_L	278_L	0.829	0.96
281_F	284_S	0.828	0.96
249_F	382_L	0.828	0.96
191_L	281_F	0.827	0.96
416_Q	419_E	0.823	0.96
289_E	292_R	0.821	0.96
242_A	386_C	0.819	0.96
65_R	383_D	0.819	0.96
414_I	420_L	0.818	0.96
261_A	285_G	0.813	0.96
110_L	119_Y	0.812	0.96
45_V	79_R	0.810	0.95
70_P	73_Y	0.809	0.95
219_M	279_Y	0.809	0.95
340_M	356_L	0.808	0.95
204_L	248_L	0.805	0.95
313_V	317_L	0.803	0.95
238_N	241_L	0.802	0.95
225_Y	232_A	0.800	0.95
87_A	95_I	0.798	0.95
248_L	276_L	0.797	0.95
44_F	48_L	0.793	0.95
234_K	237_D	0.793	0.95
189_F	192_N	0.788	0.95
192_N	196_E	0.788	0.95
89_F	119_Y	0.787	0.95
417_V	421_V	0.785	0.95
57_K	60_Q	0.781	0.95
290_K	294_L	0.776	0.94
325_D	332_G	0.775	0.94
416_Q	421_V	0.774	0.94
32_I	35_K	0.770	0.94
314_L	333_L	0.769	0.94
42_K	46_D	0.764	0.94
417_V	420_L	0.762	0.94
148_V	171_L	0.759	0.94
291_T	317_L	0.759	0.94
225_Y	236_V	0.758	0.94
190_Y	258_Y	0.755	0.93
336_F	360_V	0.754	0.93
121_G	218_V	0.754	0.93
141_V	182_M	0.750	0.93
333_L	336_F	0.746	0.93
106_I	216_V	0.746	0.93
360_V	364_F	0.743	0.93
194_I	284_S	0.742	0.93
289_E	419_E	0.741	0.93
312_R	315_D	0.741	0.93
194_I	252_M	0.739	0.93
287_I	375_P	0.736	0.93
91_Q	95_I	0.735	0.93
197_E	251_Y	0.733	0.92
136_G	139_E	0.733	0.92
70_P	74_I	0.733	0.92
225_Y	272_E	0.731	0.92
137_I	140_T	0.728	0.92
415_E	418_R	0.727	0.92
123_Y	218_V	0.726	0.92
308_D	311_V	0.726	0.92
49_I	52_G	0.722	0.92
225_Y	233_K	0.721	0.92
349_E	352_D	0.718	0.92
61_I	174_F	0.716	0.92
168_K	172_E	0.713	0.91
229_S	236_V	0.713	0.91
94_K	97_D	0.711	0.91
177_R	180_E	0.709	0.91
169_V	380_N	0.708	0.91
58_F	174_F	0.706	0.91
100_L	106_I	0.706	0.91
413_V	417_V	0.705	0.91
188_A	191_L	0.704	0.91
87_A	91_Q	0.703	0.91
283_M	377_R	0.702	0.91
183_D	186_K	0.702	0.91
418_R	421_V	0.701	0.91
89_F	108_K	0.700	0.91
46_D	76_E	0.696	0.90
174_F	373_V	0.694	0.90
127_I	221_Y	0.693	0.90
311_V	315_D	0.693	0.90
247_R	401_T	0.693	0.90
209_I	212_A	0.693	0.90
83_E	108_K	0.692	0.90
192_N	208_S	0.692	0.90
55_F	147_V	0.691	0.90
52_G	134_R	0.689	0.90
415_E	419_E	0.685	0.90
328_V	332_G	0.685	0.90
308_D	312_R	0.683	0.90
260_H	264_H	0.682	0.89
404_E	408_Y	0.682	0.89
238_N	242_A	0.680	0.89
145_I	179_F	0.678	0.89
415_E	421_V	0.678	0.89
84_V	112_S	0.678	0.89
114_S	181_E	0.677	0.89
183_D	189_F	0.677	0.89
377_R	381_V	0.675	0.89
56_I	85_P	0.675	0.89
225_Y	237_D	0.673	0.89
395_F	398_S	0.672	0.89
292_R	402_F	0.672	0.89
195_K	199_S	0.672	0.89
212_A	217_L	0.670	0.89
96_I	105_K	0.669	0.89
327_R	330_A	0.668	0.88
46_D	50_E	0.667	0.88
97_D	102_N	0.665	0.88
38_A	72_T	0.664	0.88
386_C	395_F	0.661	0.88
115_L	365_P	0.659	0.88
104_V	107_L	0.658	0.88
49_I	85_P	0.658	0.88
146_Q	149_K	0.655	0.87
158_V	161_E	0.654	0.87
63_S	226_K	0.654	0.87
97_D	105_K	0.653	0.87
87_A	112_S	0.653	0.87
43_K	141_V	0.651	0.87
307_A	311_V	0.649	0.87
262_D	267_N	0.649	0.87
149_K	168_K	0.648	0.87
345_V	349_E	0.648	0.87
41_A	72_T	0.648	0.87
237_D	240_I	0.645	0.87
189_F	193_K	0.643	0.87
78_A	81_Q	0.643	0.87
65_R	134_R	0.638	0.86
100_L	104_V	0.637	0.86
318_G	366_L	0.637	0.86
53_P	134_R	0.637	0.86
177_R	374_L	0.637	0.86
269_A	277_V	0.634	0.86
230_E	388_E	0.631	0.86
250_M	399_S	0.629	0.85
211_K	218_V	0.629	0.85
100_L	213_T	0.625	0.85
227_V	276_L	0.625	0.85
253_L	287_I	0.622	0.85
37_M	73_Y	0.620	0.85
177_R	283_M	0.620	0.85
230_E	233_K	0.620	0.85
181_E	263_P	0.619	0.84
397_K	400_I	0.617	0.84
311_V	320_I	0.616	0.84
294_L	317_L	0.616	0.84
240_I	274_G	0.615	0.84
413_V	418_R	0.615	0.84
95_I	215_R	0.612	0.84
198_L	201_Y	0.612	0.84
77_L	80_L	0.611	0.84
264_H	267_N	0.611	0.84
56_I	80_L	0.610	0.84
325_D	331_K	0.610	0.84
278_L	281_F	0.608	0.83
224_G	277_V	0.608	0.83
98_E	392_D	0.608	0.83
70_P	379_V	0.608	0.83
156_R	167_I	0.605	0.83
271_D	274_G	0.605	0.83
310_L	333_L	0.605	0.83
133_N	369_P	0.605	0.83
166_I	367_R	0.604	0.83
369_P	377_R	0.604	0.83
95_I	216_V	0.602	0.83
252_M	381_V	0.601	0.83
191_L	195_K	0.600	0.83
48_L	77_L	0.599	0.82
246_F	393_F	0.599	0.82
327_R	331_K	0.599	0.82
292_R	296_I	0.598	0.82
415_E	420_L	0.597	0.82
300_V	403_L	0.596	0.82
224_G	269_A	0.596	0.82
173_E	219_M	0.596	0.82
351_E	354_M	0.596	0.82
186_K	189_F	0.594	0.82
326_R	333_L	0.593	0.82
92_V	95_I	0.593	0.82
305_M	338_Q	0.593	0.82
132_V	216_V	0.591	0.82
66_P	78_A	0.590	0.81
67_D	383_D	0.589	0.81
110_L	120_L	0.589	0.81
323_F	326_R	0.588	0.81
65_R	384_G	0.588	0.81
96_I	107_L	0.587	0.81
329_L	332_G	0.586	0.81
71_E	74_I	0.584	0.81
142_N	146_Q	0.584	0.81
47_T	50_E	0.583	0.81
245_V	268_I	0.583	0.81
98_E	104_V	0.583	0.81
39_E	42_K	0.582	0.81
106_I	123_Y	0.581	0.81
102_N	105_K	0.581	0.81
203_S	240_I	0.579	0.80
252_M	256_K	0.579	0.80
106_I	130_I	0.579	0.80
304_R	309_S	0.579	0.80
228_T	388_E	0.579	0.80
33_D	37_M	0.576	0.80
219_M	281_F	0.575	0.80
147_V	151_L	0.574	0.80
35_K	108_K	0.574	0.80
113_A	118_V	0.574	0.80
417_V	422_N	0.572	0.79
85_P	88_P	0.572	0.79
304_R	400_I	0.571	0.79
409_T	422_N	0.569	0.79
149_K	153_P	0.569	0.79
315_D	326_R	0.568	0.79
77_L	109_E	0.568	0.79
121_G	129_A	0.567	0.79
90_S	93_S	0.567	0.79
90_S	94_K	0.566	0.79
307_A	330_A	0.566	0.79
243_Y	398_S	0.564	0.79
195_K	206_I	0.563	0.78
358_D	361_F	0.563	0.78
44_F	47_T	0.563	0.78
142_N	175_S	0.562	0.78
185_T	188_A	0.562	0.78
97_D	132_V	0.561	0.78
81_Q	228_T	0.561	0.78
124_N	210_I	0.559	0.78
34_E	37_M	0.559	0.78
298_A	389_I	0.558	0.78
250_M	254_L	0.558	0.78
307_A	334_R	0.557	0.78
63_S	144_D	0.557	0.78
193_K	196_E	0.557	0.78
95_I	98_E	0.556	0.78
181_E	281_F	0.556	0.78
253_L	378_M	0.555	0.77
252_M	278_L	0.554	0.77
226_K	229_S	0.553	0.77
99_E	214_K	0.551	0.77
55_F	383_D	0.550	0.77
113_A	377_R	0.549	0.77
412_V	420_L	0.549	0.77
86_P	134_R	0.549	0.77
387_R	394_D	0.548	0.77
242_A	391_K	0.547	0.76
53_P	296_I	0.547	0.76
64_V	384_G	0.547	0.76
91_Q	136_G	0.546	0.76
191_L	211_K	0.545	0.76
36_E	40_E	0.544	0.76
339_A	356_L	0.544	0.76
348_L	351_E	0.543	0.76
300_V	394_D	0.542	0.76
410_T	413_V	0.540	0.76
113_A	184_Y	0.539	0.75
375_P	378_M	0.538	0.75
106_I	213_T	0.538	0.75
311_V	330_A	0.538	0.75
374_L	377_R	0.535	0.75
408_Y	411_K	0.535	0.75
138_K	146_Q	0.534	0.75
41_A	318_G	0.533	0.75
40_E	72_T	0.533	0.75
305_M	341_Q	0.533	0.75
221_Y	269_A	0.533	0.75
51_L	54_T	0.533	0.75
116_G	387_R	0.532	0.74
72_T	76_E	0.531	0.74
74_I	78_A	0.531	0.74
154_L	158_V	0.531	0.74
96_I	103_S	0.530	0.74
244_R	275_N	0.529	0.74
98_E	139_E	0.528	0.74
47_T	51_L	0.528	0.74
249_F	394_D	0.528	0.74
185_T	192_N	0.527	0.74
52_G	65_R	0.527	0.74
101_G	104_V	0.527	0.74
48_L	254_L	0.526	0.74
182_M	287_I	0.525	0.73
129_A	150_K	0.525	0.73
245_V	382_L	0.525	0.73
184_Y	281_F	0.525	0.73
52_G	260_H	0.525	0.73
419_E	422_N	0.525	0.73
288_D	371_K	0.525	0.73
184_Y	283_M	0.525	0.73
113_A	117_Q	0.524	0.73
131_K	187_E	0.524	0.73
84_V	134_R	0.523	0.73
44_F	62_L	0.523	0.73
198_L	206_I	0.523	0.73
333_L	337_M	0.522	0.73
250_M	299_Y	0.522	0.73
296_I	407_G	0.521	0.73
115_L	133_N	0.521	0.73
57_K	264_H	0.520	0.73
270_V	278_L	0.519	0.73
64_V	381_V	0.519	0.73
42_K	322_P	0.519	0.73
111_S	394_D	0.518	0.72
151_L	155_L	0.518	0.72
134_R	137_I	0.518	0.72
329_L	366_L	0.518	0.72
252_M	260_H	0.517	0.72
87_A	119_Y	0.515	0.72
198_L	245_V	0.515	0.72
385_T	388_E	0.514	0.72
243_Y	393_F	0.514	0.72
350_L	371_K	0.513	0.72
53_P	377_R	0.513	0.72
250_M	379_V	0.513	0.72
406_E	409_T	0.513	0.72
52_G	285_G	0.512	0.72
325_D	329_L	0.512	0.72
243_Y	390_D	0.512	0.72
262_D	266_G	0.510	0.71
418_R	422_N	0.509	0.71
172_E	175_S	0.508	0.71
59_G	77_L	0.507	0.71
311_V	333_L	0.506	0.71
291_T	372_L	0.505	0.71
291_T	294_L	0.505	0.71
414_I	417_V	0.504	0.70
247_R	251_Y	0.504	0.70
139_E	202_P	0.504	0.70
49_I	84_V	0.504	0.70
94_K	102_N	0.503	0.70
113_A	281_F	0.503	0.70
293_N	410_T	0.503	0.70
57_K	267_N	0.503	0.70
57_K	282_G	0.502	0.70
287_I	371_K	0.502	0.70
313_V	316_E	0.502	0.70
183_D	310_L	0.501	0.70
64_V	81_Q	0.501	0.70
57_K	131_K	0.500	0.70
174_F	386_C	0.500	0.70

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4pedA	1	0.7419	100	0.428	Contact Map
3byvA	1	0.6472	100	0.721	Contact Map
2y7jA	3	0.4778	100	0.727	Contact Map
4yhjA	2	0.8145	100	0.743	Contact Map
3v5wA	1	0.8125	100	0.797	Contact Map
1zarA	1	0.498	99.9	0.813	Contact Map
1u5qA	2	0.5887	99.9	0.817	Contact Map
4otpA	1	0.4597	99.9	0.827	Contact Map
3dzoA	1	0.623	99.8	0.842	Contact Map
3fegA	2	0.6109	99.8	0.852	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0118 seconds.