Q97VL2 - SULSO - GREMLIN Contacts

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Q97VL2 - Uncharacterized protein

UniProt:	Q97VL2	Sequences: MNKAILGIVIVVLVLAGGVYYGFYYLTTGVVNVYIQDPPTSQGVKIYLTISSIMIHKVNASNDSWITISNKTITILLTSNMTFLASSRIPSGQYNEVFLEISFAQVQLGNVNISAKIPSGVFKIHIINGMDLKGGSSQSLLISFPHITYANGQIIISPSITAEVIS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	166 (154)
Sequences:	113 (81)
Seq/√Len:	6.6

SULSO - Q97VL2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
52_S	67_T	4.054	0.95
78_T	98_F	2.890	0.79
33_V	140_L	2.622	0.71
124_I	140_L	2.589	0.70
12_V	90_P	2.574	0.70
8_I	14_V	2.412	0.64
45_K	76_L	2.376	0.63
104_A	117_I	2.304	0.61
31_V	55_I	2.283	0.60
29_G	112_N	2.260	0.59
98_F	123_K	2.218	0.57
149_Y	153_Q	2.205	0.57
78_T	123_K	2.166	0.56
39_P	91_S	2.043	0.51
98_F	125_H	2.016	0.50
11_V	17_G	1.998	0.49
97_V	108_L	1.997	0.49
63_D	82_T	1.979	0.49
13_L	28_T	1.974	0.48
96_E	123_K	1.933	0.47
59_N	89_I	1.821	0.43
16_A	19_V	1.796	0.42
116_K	151_N	1.783	0.41
35_I	95_N	1.745	0.40
126_I	153_Q	1.709	0.39
36_Q	81_M	1.651	0.37
101_I	104_A	1.611	0.35
35_I	43_G	1.611	0.35
152_G	159_S	1.586	0.35
126_I	161_T	1.572	0.34
56_H	65_W	1.545	0.33
17_G	116_K	1.532	0.33
127_I	140_L	1.524	0.33
116_K	124_I	1.523	0.32
69_S	134_G	1.474	0.31
115_A	125_H	1.398	0.29
50_I	67_T	1.375	0.28
47_Y	162_A	1.367	0.28
46_I	76_L	1.367	0.28
31_V	58_V	1.338	0.27
50_I	117_I	1.331	0.27
101_I	117_I	1.321	0.26
51_S	97_V	1.321	0.26
27_T	82_T	1.321	0.26
51_S	63_D	1.311	0.26
8_I	82_T	1.300	0.26
9_V	45_K	1.288	0.25
57_K	88_R	1.283	0.25
61_S	90_P	1.280	0.25
75_I	113_I	1.269	0.25
36_Q	144_F	1.258	0.24
55_I	89_I	1.236	0.24
34_Y	102_S	1.222	0.24
60_A	90_P	1.216	0.23
51_S	129_G	1.210	0.23
30_V	139_S	1.206	0.23
51_S	127_I	1.202	0.23
69_S	135_G	1.201	0.23
9_V	28_T	1.180	0.22
80_N	98_F	1.179	0.22
130_M	138_Q	1.179	0.22
26_L	63_D	1.172	0.22
93_Q	126_I	1.169	0.22
50_I	132_L	1.161	0.22
20_Y	117_I	1.121	0.21
124_I	160_I	1.109	0.21
73_I	82_T	1.083	0.20
116_K	120_G	1.079	0.20
17_G	68_I	1.066	0.20
141_L	159_S	1.057	0.19
93_Q	135_G	1.043	0.19
43_G	113_I	1.041	0.19
61_S	66_I	1.037	0.19
75_I	144_F	1.018	0.19
31_V	52_S	1.015	0.18
12_V	59_N	1.008	0.18
48_L	59_N	1.005	0.18
8_I	61_S	1.004	0.18
46_I	145_P	1.003	0.18
106_V	159_S	1.002	0.18
46_I	157_S	0.985	0.18
65_W	84_L	0.980	0.18
120_G	140_L	0.965	0.17
132_L	141_L	0.964	0.17
39_P	144_F	0.950	0.17
140_L	151_N	0.946	0.17
53_I	74_T	0.944	0.17
55_I	141_L	0.943	0.17
113_I	136_S	0.942	0.17
110_N	131_D	0.939	0.17
27_T	62_N	0.930	0.17
19_V	143_S	0.930	0.17
28_T	68_I	0.917	0.16
21_Y	30_V	0.911	0.16
152_G	162_A	0.905	0.16
79_S	131_D	0.905	0.16
43_G	151_N	0.900	0.16
47_Y	76_L	0.895	0.16
84_L	145_P	0.889	0.16
83_F	133_K	0.889	0.16
51_S	66_I	0.886	0.16
15_L	59_N	0.876	0.16
120_G	130_M	0.874	0.16
82_T	102_S	0.873	0.15
133_K	136_S	0.871	0.15
103_F	124_I	0.870	0.15
95_N	106_V	0.865	0.15
76_L	143_S	0.853	0.15
96_E	142_I	0.852	0.15
53_I	63_D	0.848	0.15
27_T	51_S	0.845	0.15
127_I	148_T	0.841	0.15
78_T	144_F	0.836	0.15
37_D	118_P	0.835	0.15
36_Q	78_T	0.826	0.15
61_S	111_V	0.826	0.15
45_K	105_Q	0.825	0.15
20_Y	90_P	0.808	0.14
130_M	154_I	0.805	0.14
53_I	70_N	0.799	0.14
49_T	77_L	0.792	0.14
60_A	128_N	0.792	0.14
36_Q	123_K	0.792	0.14
15_L	97_V	0.789	0.14
31_V	63_D	0.786	0.14
30_V	159_S	0.779	0.14
79_S	147_I	0.779	0.14
93_Q	129_G	0.774	0.14
13_L	57_K	0.770	0.14
14_V	154_I	0.763	0.13
39_P	117_I	0.762	0.13
29_G	85_A	0.760	0.13
136_S	151_N	0.757	0.13
35_I	113_I	0.755	0.13
106_V	138_Q	0.754	0.13
124_I	148_T	0.754	0.13
123_K	144_F	0.739	0.13
97_V	127_I	0.737	0.13
68_I	114_S	0.732	0.13
55_I	136_S	0.731	0.13
16_A	59_N	0.729	0.13
116_K	161_T	0.720	0.13
38_P	46_I	0.718	0.13
56_H	70_N	0.710	0.13
33_V	147_I	0.709	0.13
111_V	115_A	0.703	0.12
53_I	111_V	0.700	0.12
78_T	125_H	0.698	0.12
10_I	13_L	0.698	0.12
92_G	119_S	0.698	0.12
14_V	40_T	0.695	0.12
75_I	126_I	0.694	0.12
134_G	153_Q	0.693	0.12
104_A	125_H	0.691	0.12
117_I	144_F	0.688	0.12
71_K	105_Q	0.684	0.12
106_V	140_L	0.683	0.12
39_P	99_L	0.682	0.12
28_T	32_N	0.680	0.12
145_P	157_S	0.678	0.12
58_V	152_G	0.676	0.12
25_Y	108_L	0.674	0.12
31_V	50_I	0.669	0.12
38_P	119_S	0.666	0.12
115_A	133_K	0.665	0.12
116_K	136_S	0.659	0.12
70_N	105_Q	0.653	0.12
55_I	117_I	0.651	0.12
95_N	129_G	0.650	0.12
106_V	127_I	0.649	0.12
16_A	147_I	0.649	0.12
98_F	119_S	0.642	0.12
23_F	29_G	0.639	0.11
116_K	140_L	0.633	0.11
140_L	146_H	0.631	0.11
11_V	14_V	0.626	0.11
12_V	133_K	0.626	0.11
108_L	116_K	0.623	0.11
64_S	160_I	0.623	0.11
18_G	108_L	0.618	0.11
66_I	110_N	0.611	0.11
48_L	143_S	0.609	0.11
143_S	154_I	0.608	0.11
66_I	127_I	0.607	0.11
21_Y	26_L	0.607	0.11
34_Y	40_T	0.604	0.11
127_I	160_I	0.603	0.11
46_I	115_A	0.603	0.11
82_T	93_Q	0.600	0.11
139_S	160_I	0.599	0.11
31_V	44_V	0.598	0.11
54_M	146_H	0.596	0.11
63_D	103_F	0.595	0.11
32_N	97_V	0.594	0.11
25_Y	161_T	0.592	0.11
65_W	119_S	0.591	0.11
21_Y	58_V	0.590	0.11
96_E	125_H	0.585	0.11
36_Q	46_I	0.581	0.11
98_F	145_P	0.578	0.11
33_V	67_T	0.577	0.11
17_G	26_L	0.566	0.10
20_Y	104_A	0.563	0.10
130_M	143_S	0.563	0.10
86_S	107_Q	0.562	0.10
78_T	96_E	0.554	0.10
140_L	162_A	0.554	0.10
65_W	98_F	0.554	0.10
46_I	55_I	0.551	0.10
93_Q	127_I	0.548	0.10
123_K	142_I	0.548	0.10
34_Y	49_T	0.545	0.10
30_V	141_L	0.545	0.10
119_S	123_K	0.543	0.10
74_T	101_I	0.538	0.10
65_W	92_G	0.537	0.10
13_L	32_N	0.536	0.10
142_I	160_I	0.536	0.10
62_N	103_F	0.535	0.10
30_V	35_I	0.532	0.10
104_A	141_L	0.529	0.10
104_A	144_F	0.529	0.10
11_V	15_L	0.521	0.10
62_N	66_I	0.513	0.10
28_T	134_G	0.512	0.10
30_V	156_I	0.507	0.10
21_Y	157_S	0.507	0.10
33_V	74_T	0.506	0.10
19_V	154_I	0.502	0.10
41_S	101_I	0.501	0.10
12_V	127_I	0.500	0.10

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3pmqA	1	0.6807	87.1	0.919	Contact Map
4lm8A	1	0.7229	81.4	0.924	Contact Map
4ombA	1	0.8434	71.5	0.93	Contact Map
4fajA	1	0.6566	69.6	0.931	Contact Map
3ry3A	1	0.6265	67.9	0.932	Contact Map
4qflA	1	0.6566	66	0.933	Contact Map
4lmhA	3	0.7711	62.4	0.935	Contact Map
4peuA	1	0.6988	56.8	0.937	Contact Map
3sbqA	2	0.4518	56.4	0.937	Contact Map
4n4rB	1	0.7169	52.3	0.938	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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