GREMLIN Database
Q97VL0 - Peroxiredoxin, bacterioferritin comigratory protein homolog (Bcp-4)
UniProt: Q97VL0 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 156 (142)
Sequences: 12891 (7974)
Seq/√Len: 669.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
31_V126_K3.4021.00
12_E20_K2.9401.00
30_K65_V2.8371.00
53_R87_N2.5931.00
15_D19_K2.5491.00
40_A77_N2.5281.00
8_A102_Y2.5171.00
12_E22_K2.4601.00
125_D131_R2.3291.00
7_K129_I2.2561.00
56_M60_N2.2361.00
14_V20_K2.2091.00
55_S58_K2.0201.00
106_G118_K1.9831.00
125_D129_I1.8981.00
3_E6_E1.8761.00
10_E22_K1.8461.00
15_D21_V1.8111.00
27_F32_V1.7731.00
97_E101_A1.7631.00
22_K25_S1.7511.00
16_T81_K1.7281.00
56_M87_N1.6751.00
71_V96_R1.6141.00
132_Y151_V1.6061.00
99_V117_A1.5951.00
13_L91_V1.5741.00
71_V99_V1.5231.00
13_L98_A1.5041.00
49_M86_I1.5001.00
55_S145_Y1.4971.00
51_T55_S1.4951.00
21_V27_F1.4921.00
32_V128_G1.3931.00
64_A152_V1.3731.00
15_D89_T1.3681.00
22_K26_D1.3661.00
26_D29_G1.3651.00
41_F84_N1.3631.00
33_V123_V1.3511.00
60_N65_V1.3261.00
41_F79_A1.3211.00
8_A124_I1.3091.00
32_V65_V1.2981.00
71_V117_A1.2871.00
78_K82_E1.2741.00
146_D150_D1.2631.00
31_V131_R1.2301.00
10_E25_S1.2111.00
124_I130_V1.2011.00
55_S146_D1.1941.00
32_V67_I1.1781.00
53_R88_F1.1611.00
31_V64_A1.1491.00
50_C54_D1.1351.00
27_F67_I1.1291.00
57_A60_N1.1251.00
96_R100_K1.1121.00
35_A49_M1.1091.00
58_K61_E1.1061.00
134_W151_V1.0821.00
147_E150_D1.0781.00
96_R105_A1.0731.00
51_T54_D1.0671.00
36_F69_I1.0651.00
68_G90_I1.0591.00
4_I132_Y1.0501.00
104_V120_S1.0381.00
14_V74_P1.0161.00
15_D91_V1.0081.00
58_K149_K1.0051.00
41_F83_Q1.0041.00
65_V89_T0.9991.00
100_K115_V0.9911.00
10_E23_I0.9791.00
57_A61_E0.9771.00
100_K105_A0.9681.00
107_E115_V0.9671.00
131_R137_E0.9621.00
50_C53_R0.9581.00
46_T84_N0.9581.00
75_F79_A0.9511.00
33_V121_V0.9491.00
98_A102_Y0.9431.00
25_S28_K0.9361.00
73_P76_S0.9341.00
104_V122_F0.9321.00
120_S135_V0.9311.00
52_F66_V0.9191.00
32_V124_I0.9171.00
41_F76_S0.9151.00
79_A82_E0.9121.00
63_N126_K0.9101.00
34_L124_I0.9051.00
67_I91_V0.9001.00
118_K135_V0.8921.00
123_V151_V0.8831.00
78_K81_K0.8761.00
23_I32_V0.8751.00
17_D78_K0.8741.00
97_E100_K0.8741.00
11_I98_A0.8611.00
35_A88_F0.8561.00
74_P92_S0.8511.00
28_K128_G0.8491.00
8_A130_V0.8471.00
122_F130_V0.8471.00
11_I102_Y0.8471.00
123_V132_Y0.8351.00
62_V152_V0.8221.00
108_L116_L0.8111.00
33_V64_A0.8111.00
93_D96_R0.8101.00
99_V105_A0.8091.00
118_K136_S0.7991.00
47_K50_C0.7941.00
50_C84_N0.7921.00
96_R99_V0.7911.00
31_V63_N0.7771.00
4_I133_K0.7751.00
21_V67_I0.7721.00
80_F84_N0.7701.00
53_R57_A0.7661.00
31_V152_V0.7591.00
105_A115_V0.7531.00
143_P146_D0.7531.00
39_A72_D0.7471.00
108_L114_Y0.7381.00
14_V94_F0.7301.00
48_E121_V0.7281.00
8_A23_I0.7261.00
36_F104_V0.7251.00
37_Y68_G0.7231.00
49_M68_G0.7211.00
37_Y40_A0.7121.00
16_T78_K0.7081.00
124_I128_G0.7001.00
53_R56_M0.6991.00
57_A87_N0.6941.00
4_I130_V0.6851.00
21_V26_D0.6801.00
75_F78_K0.6781.00
69_I98_A0.6761.00
77_N80_F0.6751.00
52_F148_I0.6741.00
134_W147_E0.6721.00
120_S133_K0.6711.00
123_V134_W0.6671.00
7_K28_K0.6641.00
143_P147_E0.6641.00
39_A116_L0.6641.00
17_D81_K0.6591.00
134_W148_I0.6581.00
23_I27_F0.6511.00
33_V52_F0.6481.00
81_K90_I0.6411.00
56_M65_V0.6391.00
8_A98_A0.6391.00
35_A48_E0.6371.00
132_Y147_E0.6351.00
122_F133_K0.6341.00
31_V123_V0.6331.00
29_G126_K0.6251.00
48_E52_F0.6241.00
59_F149_K0.6211.00
51_T145_Y0.6181.00
121_V148_I0.6171.00
73_P94_F0.6161.00
16_T89_T0.6141.00
38_P42_T0.6141.00
144_N147_E0.6141.00
62_V149_K0.6121.00
34_L102_Y0.6111.00
3_E133_K0.6111.00
42_T119_R0.6071.00
36_F98_A0.5991.00
28_K127_N0.5891.00
58_K62_V0.5821.00
27_F65_V0.5761.00
11_I23_I0.5751.00
72_D76_S0.5731.00
7_K10_E0.5691.00
47_K51_T0.5691.00
74_P78_K0.5691.00
43_S47_K0.5651.00
98_A101_A0.5571.00
6_E133_K0.5551.00
35_A121_V0.5551.00
40_A76_S0.5551.00
9_P101_A0.5531.00
59_F64_A0.5521.00
99_V104_V0.5511.00
106_G114_Y0.5491.00
10_E28_K0.5461.00
39_A42_T0.5461.00
33_V148_I0.5451.00
76_S79_A0.5391.00
51_T140_T0.5391.00
52_F145_Y0.5381.00
114_Y118_K0.5341.00
26_D67_I0.5331.00
36_F102_Y0.5331.00
55_S59_F0.5321.00
47_K140_T0.5321.00
116_L138_D0.5321.00
94_F115_V0.5240.99
106_G116_L0.5190.99
35_A68_G0.5170.99
33_V152_V0.5130.99
79_A83_Q0.5110.99
66_V88_F0.5060.99
59_F63_N0.5020.99
43_S46_T0.5000.99
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3w6gA 6 0.9487 100 0.252 Contact Map
3a2vA 5 0.9615 100 0.259 Contact Map
2v2gA 2 0.9744 100 0.26 Contact Map
1xiyA 1 0.9808 100 0.273 Contact Map
1prxA 2 0.9744 100 0.275 Contact Map
1xccA 2 0.9808 100 0.28 Contact Map
1xvwA 3 0.9551 100 0.289 Contact Map
4g2eA 2 0.9551 100 0.308 Contact Map
2c0dA 2 0.9359 100 0.31 Contact Map
3tjjA 3 0.9551 100 0.311 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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