Q97VK9 - SULSO - GREMLIN Contacts

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Q97VK9 - Dipeptide ABC transporter ATP binding protein (DppF-3)

UniProt:	Q97VK9	Sequences: MSDSILYKAININKYYLAKKRGILESLAREPPIYVRALDNVSVEIRKGEVLGVVGESGSGKTTLGKVLATLEKPTGGNLIFMGMEVNDRNINHVRKHIHMVFQNPMTSINPRMKVKDIVREAMKEKREERVKKLLEEVGLDYNYVKDKYPRELSGGQTQRVAIARALAKEPDFLILDEPTSALDASVQAQILNLLVDLQKERKLTYLFITHNIAVARYISDRVIIMYAGKIVEEGNTKEVISEPMHPYTQSLLSSVPELGKKELKPPSGEVPSLINPPSGCRFNPRCPFAMSVCKEKEPPLVEINGRKVACWLYETNWKKASR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	323 (267)
Sequences:	41940 (27287)
Seq/√Len:	1669.9

ECOLI - PROV OPPF POTG MALK FBPC POTA CYSA YCJV MODC DPPD DPPF SAPD UGPC OPPD METN YDCT DDPD YHES GSIA YEHX YADG DDPF UUP ARAG RBSA MDLA MDLB CYDC FEPC MSBA MACB YOJI CYDD SAPF LSRA SSUB YTFR FHUC MLAF HISP NIKE YECC FECE ETTA TAUB YHDZ PHNC GLNQ LPTB PHNK GLTL ZNUC YPHE SUFC BTUD MODF LIVG PSTB LIVF XYLG ARTP ALSA FTSE NIKD LOLD FETA MGLA THIQ YBBA CCMA YDDA YEJF PHNL YNJD YBHF YBIT YHIH
BACSU - OPUAA YVRA OPUCA OPUBA MSMX YURJ OPPD YKFD DPPD METN APPD YHCH APPF TAGH YDBJ YFIL YCBN YHEH YVFR OPPF YXLF SUNT YHAQ YDIF YKPA RBSA YFIC YGAD YFMR YFMM YHEI YTRB ECFA1 BMRA YKNV YFIB YUSV YKNU YFMF FHUC YWJA CYDC CYDD YLMA YKOD YCLP TCYN ECFA2 SUFC ECSA YXDL BCEA YJKB YTLC GLNQ YXEO YVCR SKFE ARTM PSTB1 ALBC TCYC SSUB FTSE EXPZ NATA MNTB PSTB2 YVRO YTHP YKNY YCLH YHCG YUFO ZNUC YYBJ YYDI YTRE
HALSA - Q9HMW0 Q9HMX3 BTUDA Q9HMX2 Q9HNZ9 Q9HHQ5 Q9HR06 Q9HMT3 Q9HMU8 Q9HRJ6 Q9HMG1 Q9HSQ7 PSTB2 Q9HRH8 PHNC Q9HHM2 Q9HMG6 PSTB1 Y1631 Q9HNY3 Q9HRV7 Q9HRZ9 Y2317 Q9HHR7 Q9HS04 Q9HR96 Q9HT03 Q9HQA8 Q9HMC1 Q9HR21 Q9HMW1
SULSO - Q97VK9 Q97VF5 Q97UF2 Q97VK8 Q97UJ9 Q97UY8 Q97YP7 Q97YY4 Q97YP3 Q97UH3 Q97YP8 Q97ZC0 Q7LX64 Q97VC1 Q97VF4 Q97VH6 Q97UD4 Q97YK2 Q97X18 Q97YQ7 Q980W0 Q97UH4 Q97Z03 Q97U54 Y2030 Y1893 PSTB Q7LY07 Q97V01 Q97W42 Q97V00 Q97VM2 Q7LXM4 Q97VY4 Q7LX80 Q97Z56 Q97UG5 Q97YP4 Q97Z96 Q97UC2 Q97ZU0 Q980K5 Q980E6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
49_E	222_R	4.746	1.00
97_H	172_D	3.775	1.00
36_R	39_D	3.220	1.00
26_S	40_N	3.139	1.00
46_R	49_E	2.962	1.00
78_N	85_E	2.946	1.00
51_L	224_I	2.935	1.00
236_N	239_E	2.883	1.00
222_R	234_E	2.871	1.00
52_G	220_S	2.860	1.00
25_E	78_N	2.837	1.00
23_I	44_E	2.716	1.00
217_R	238_K	2.561	1.00
224_I	231_I	2.552	1.00
82_M	172_D	2.537	1.00
39_D	230_K	2.368	1.00
65_G	209_I	2.324	1.00
28_A	32_P	2.324	1.00
113_M	117_D	2.270	1.00
130_R	133_K	2.252	1.00
235_G	240_V	2.224	1.00
47_K	172_D	2.223	1.00
134_L	168_A	2.185	1.00
130_R	170_E	2.125	1.00
65_G	175_I	2.052	1.00
28_A	31_P	1.998	1.00
235_G	239_E	1.951	1.00
52_G	216_A	1.941	1.00
132_K	142_Y	1.928	1.00
85_E	88_D	1.923	1.00
25_E	80_I	1.868	1.00
91_I	94_V	1.861	1.00
148_K	152_E	1.838	1.00
224_I	234_E	1.813	1.00
133_K	137_E	1.787	1.00
210_T	216_A	1.780	1.00
132_K	146_K	1.778	1.00
145_V	148_K	1.721	1.00
116_K	120_R	1.708	1.00
23_I	80_I	1.616	1.00
43_V	224_I	1.607	1.00
91_I	95_R	1.600	1.00
116_K	147_D	1.582	1.00
45_I	51_L	1.573	1.00
120_R	131_V	1.570	1.00
144_Y	148_K	1.566	1.00
82_M	97_H	1.556	1.00
196_V	218_Y	1.551	1.00
198_L	204_L	1.535	1.00
43_V	64_L	1.526	1.00
116_K	146_K	1.513	1.00
239_E	243_E	1.512	1.00
90_N	93_H	1.450	1.00
128_E	132_K	1.445	1.00
116_K	128_E	1.437	1.00
114_K	117_D	1.425	1.00
120_R	127_R	1.419	1.00
192_L	215_V	1.405	1.00
30_E	33_I	1.404	1.00
49_E	221_D	1.348	1.00
119_V	135_L	1.344	1.00
101_V	176_L	1.342	1.00
24_L	43_V	1.336	1.00
117_D	120_R	1.334	1.00
249_T	253_L	1.331	1.00
51_L	222_R	1.326	1.00
70_T	73_K	1.325	1.00
134_L	138_V	1.316	1.00
129_E	133_K	1.315	1.00
281_C	287_C	1.312	1.00
118_I	165_R	1.302	1.00
170_E	204_L	1.298	1.00
196_V	199_Q	1.295	1.00
69_A	100_M	1.287	1.00
50_V	199_Q	1.282	1.00
99_H	171_P	1.271	1.00
26_S	42_S	1.270	1.00
153_L	161_V	1.262	1.00
250_Q	254_S	1.258	1.00
237_T	248_Y	1.247	1.00
113_M	121_E	1.240	1.00
112_R	151_R	1.239	1.00
53_V	207_L	1.237	1.00
50_V	220_S	1.237	1.00
41_V	64_L	1.223	1.00
132_K	136_E	1.223	1.00
195_L	206_Y	1.206	1.00
287_C	294_C	1.205	1.00
128_E	146_K	1.185	1.00
114_K	147_D	1.166	1.00
64_L	226_M	1.159	1.00
51_L	234_E	1.154	1.00
133_K	136_E	1.151	1.00
279_S	284_N	1.149	1.00
84_M	89_R	1.148	1.00
176_L	206_Y	1.147	1.00
47_K	82_M	1.146	1.00
50_V	206_Y	1.140	1.00
287_C	291_M	1.139	1.00
183_L	191_I	1.137	1.00
124_K	127_R	1.134	1.00
67_V	74_P	1.117	1.00
174_L	204_L	1.117	1.00
69_A	175_I	1.115	1.00
120_R	128_E	1.112	1.00
39_D	282_R	1.110	1.00
70_T	91_I	1.107	1.00
119_V	168_A	1.101	1.00
38_L	67_V	1.082	1.00
223_V	237_T	1.081	1.00
31_P	34_Y	1.078	1.00
66_K	71_L	1.078	1.00
53_V	224_I	1.078	1.00
188_Q	212_N	1.078	1.00
250_Q	289_F	1.077	1.00
135_L	146_K	1.075	1.00
199_Q	206_Y	1.069	1.00
47_K	203_K	1.068	1.00
244_P	249_T	1.065	1.00
45_I	173_F	1.064	1.00
23_I	26_S	1.062	1.00
127_R	131_V	1.061	1.00
80_I	85_E	1.061	1.00
99_H	166_A	1.058	1.00
84_M	93_H	1.052	1.00
53_V	64_L	1.050	1.00
238_K	242_S	1.050	1.00
123_M	168_A	1.049	1.00
46_R	205_T	1.048	1.00
137_E	197_D	1.042	1.00
134_L	164_A	1.037	1.00
208_F	220_S	1.024	1.00
230_K	282_R	1.024	1.00
239_E	242_S	1.020	1.00
46_R	222_R	1.016	1.00
141_D	144_Y	1.016	1.00
278_P	284_N	1.014	1.00
145_V	153_L	1.014	1.00
254_S	265_K	1.013	1.00
139_G	190_Q	1.011	1.00
28_A	63_T	1.009	1.00
25_E	44_E	0.997	1.00
67_V	72_E	0.988	1.00
208_F	219_I	0.988	1.00
174_L	206_Y	0.981	1.00
136_E	142_Y	0.979	1.00
284_N	290_A	0.971	1.00
29_R	32_P	0.961	1.00
126_K	129_E	0.957	1.00
59_S	226_M	0.949	1.00
70_T	94_V	0.941	1.00
130_R	134_L	0.940	1.00
45_I	205_T	0.937	1.00
283_F	287_C	0.934	1.00
188_Q	215_V	0.933	1.00
109_I	158_T	0.933	1.00
110_N	113_M	0.931	1.00
128_E	147_D	0.930	1.00
67_V	79_L	0.930	1.00
281_C	294_C	0.927	1.00
40_N	230_K	0.927	1.00
290_A	294_C	0.926	1.00
116_K	131_V	0.920	1.00
125_E	129_E	0.919	1.00
175_I	207_L	0.917	1.00
134_L	137_E	0.917	1.00
68_L	207_L	0.916	1.00
278_P	285_P	0.915	1.00
284_N	287_C	0.914	1.00
273_S	276_N	0.913	1.00
178_E	211_H	0.903	1.00
135_L	140_L	0.898	1.00
30_E	75_T	0.896	1.00
155_G	160_R	0.896	1.00
285_P	288_P	0.894	1.00
277_P	282_R	0.892	1.00
126_K	130_R	0.889	1.00
247_P	250_Q	0.887	1.00
113_M	118_I	0.887	1.00
241_I	244_P	0.881	1.00
122_A	165_R	0.880	1.00
139_G	197_D	0.878	1.00
282_R	285_P	0.876	1.00
268_S	272_P	0.874	1.00
29_R	36_R	0.874	1.00
67_V	75_T	0.866	1.00
38_L	41_V	0.866	1.00
189_A	193_N	0.864	1.00
98_I	173_F	0.863	1.00
127_R	130_R	0.863	1.00
66_K	72_E	0.861	1.00
54_V	225_I	0.858	1.00
26_S	76_G	0.852	1.00
87_N	90_N	0.848	1.00
136_E	141_D	0.845	1.00
220_S	223_V	0.845	1.00
199_Q	221_D	0.843	1.00
54_V	216_A	0.843	1.00
288_P	291_M	0.835	1.00
131_V	134_L	0.829	1.00
291_M	294_C	0.821	1.00
41_V	231_I	0.820	1.00
51_L	207_L	0.820	1.00
196_V	219_I	0.818	1.00
274_L	277_P	0.816	1.00
225_I	240_V	0.815	1.00
240_V	249_T	0.810	1.00
119_V	131_V	0.809	1.00
255_S	258_E	0.808	1.00
89_R	94_V	0.807	1.00
225_I	244_P	0.798	1.00
199_Q	204_L	0.797	1.00
115_V	153_L	0.796	1.00
192_L	218_Y	0.794	1.00
45_I	207_L	0.790	1.00
284_N	288_P	0.787	1.00
136_E	143_N	0.783	1.00
101_V	163_I	0.777	1.00
176_L	195_L	0.777	1.00
227_Y	232_V	0.774	1.00
237_T	241_I	0.773	1.00
264_L	267_P	0.772	1.00
193_N	197_D	0.770	1.00
149_Y	152_E	0.768	1.00
150_P	161_V	0.768	1.00
24_L	68_L	0.768	1.00
30_E	63_T	0.767	1.00
122_A	169_K	0.759	1.00
116_K	143_N	0.757	1.00
138_V	164_A	0.756	1.00
25_E	42_S	0.756	1.00
142_Y	145_V	0.753	1.00
268_S	288_P	0.750	1.00
85_E	89_R	0.748	1.00
289_F	292_S	0.745	1.00
50_V	196_V	0.743	1.00
173_F	207_L	0.743	1.00
115_V	161_V	0.741	1.00
30_E	67_V	0.740	1.00
277_P	280_G	0.734	1.00
29_R	34_Y	0.733	1.00
280_G	284_N	0.731	1.00
89_R	93_H	0.730	1.00
81_F	97_H	0.730	1.00
124_K	128_E	0.729	1.00
269_G	272_P	0.727	1.00
281_C	286_R	0.726	1.00
280_G	283_F	0.722	1.00
71_L	102_F	0.719	1.00
263_E	266_P	0.715	1.00
180_T	215_V	0.709	1.00
31_P	36_R	0.707	1.00
153_L	157_Q	0.706	1.00
109_I	118_I	0.702	1.00
56_E	59_S	0.701	1.00
134_L	167_L	0.700	1.00
227_Y	230_K	0.700	1.00
283_F	286_R	0.700	1.00
84_M	97_H	0.700	1.00
73_K	87_N	0.699	1.00
48_G	205_T	0.698	1.00
263_E	267_P	0.693	1.00
194_L	197_D	0.692	1.00
287_C	290_A	0.691	1.00
173_F	205_T	0.687	1.00
272_P	278_P	0.686	1.00
276_N	279_S	0.685	1.00
81_F	173_F	0.683	1.00
248_Y	251_S	0.683	1.00
57_S	178_E	0.680	1.00
215_V	219_I	0.677	1.00
248_Y	252_L	0.674	1.00
94_V	98_I	0.673	1.00
257_P	260_G	0.669	1.00
101_V	166_A	0.668	1.00
251_S	255_S	0.665	1.00
233_E	243_E	0.665	1.00
231_I	234_E	0.665	1.00
114_K	149_Y	0.664	1.00
243_E	246_H	0.663	1.00
274_L	278_P	0.662	1.00
37_A	63_T	0.657	1.00
68_L	79_L	0.655	1.00
50_V	208_F	0.653	1.00
109_I	161_V	0.652	1.00
281_C	284_N	0.651	1.00
286_R	291_M	0.648	1.00
286_R	294_C	0.647	1.00
78_N	88_D	0.646	1.00
283_F	291_M	0.645	1.00
130_R	137_E	0.644	1.00
24_L	28_A	0.643	1.00
281_C	285_P	0.643	1.00
286_R	290_A	0.641	1.00
129_E	132_K	0.640	1.00
86_V	89_R	0.640	1.00
134_L	140_L	0.634	1.00
279_S	285_P	0.633	1.00
81_F	86_V	0.631	1.00
210_T	215_V	0.629	1.00
114_K	118_I	0.627	1.00
275_I	288_P	0.625	1.00
123_M	130_R	0.625	1.00
270_E	274_L	0.625	1.00
69_A	98_I	0.622	1.00
216_A	220_S	0.620	1.00
128_E	131_V	0.619	1.00
167_L	204_L	0.617	1.00
118_I	150_P	0.616	1.00
256_V	259_L	0.615	1.00
119_V	122_A	0.613	1.00
273_S	277_P	0.613	1.00
284_N	291_M	0.607	1.00
213_I	241_I	0.606	1.00
255_S	259_L	0.602	1.00
116_K	119_V	0.602	1.00
214_A	218_Y	0.599	1.00
220_S	237_T	0.599	1.00
142_Y	146_K	0.597	1.00
50_V	219_I	0.596	1.00
252_L	256_V	0.592	1.00
108_S	162_A	0.591	1.00
266_P	270_E	0.590	1.00
43_V	51_L	0.588	1.00
145_V	157_Q	0.586	1.00
47_K	205_T	0.586	1.00
90_N	94_V	0.586	1.00
140_L	145_V	0.586	1.00
140_L	157_Q	0.585	1.00
30_E	34_Y	0.585	1.00
235_G	241_I	0.585	1.00
290_A	293_V	0.583	1.00
86_V	98_I	0.582	1.00
274_L	280_G	0.580	1.00
193_N	196_V	0.579	1.00
232_V	282_R	0.578	1.00
105_P	162_A	0.577	1.00
172_D	204_L	0.576	1.00
131_V	146_K	0.575	1.00
271_V	274_L	0.575	1.00
196_V	200_K	0.574	1.00
40_N	76_G	0.573	1.00
247_P	251_S	0.572	1.00
50_V	221_D	0.571	1.00
286_R	289_F	0.570	1.00
38_L	64_L	0.568	1.00
154_S	157_Q	0.568	1.00
57_S	183_L	0.564	1.00
129_E	136_E	0.564	1.00
29_R	75_T	0.564	1.00
282_R	288_P	0.564	1.00
66_K	100_M	0.564	1.00
288_P	292_S	0.563	1.00
282_R	294_C	0.563	1.00
273_S	278_P	0.559	1.00
132_K	143_N	0.557	1.00
88_D	91_I	0.556	1.00
275_I	279_S	0.552	1.00
253_L	256_V	0.551	1.00
78_N	87_N	0.548	1.00
193_N	218_Y	0.548	1.00
74_P	79_L	0.546	1.00
28_A	74_P	0.546	1.00
237_T	240_V	0.543	1.00
261_K	266_P	0.543	1.00
276_N	280_G	0.540	1.00
233_E	245_M	0.540	1.00
115_V	119_V	0.538	1.00
281_C	288_P	0.536	1.00
56_E	227_Y	0.534	1.00
256_V	260_G	0.533	1.00
125_E	128_E	0.531	1.00
272_P	276_N	0.528	1.00
233_E	244_P	0.528	1.00
271_V	285_P	0.528	1.00
285_P	290_A	0.527	1.00
270_E	273_S	0.526	1.00
62_T	66_K	0.526	1.00
120_R	146_K	0.526	1.00
163_I	191_I	0.525	1.00
243_E	247_P	0.523	1.00
127_R	132_K	0.522	1.00
250_Q	253_L	0.521	1.00
120_R	123_M	0.521	1.00
240_V	244_P	0.519	1.00
287_C	292_S	0.519	1.00
274_L	279_S	0.518	1.00
278_P	282_R	0.517	1.00
275_I	278_P	0.516	1.00
251_S	254_S	0.516	1.00
246_H	249_T	0.512	1.00
185_A	189_A	0.510	1.00
148_K	153_L	0.508	1.00
199_Q	203_K	0.507	1.00
118_I	122_A	0.505	1.00
135_L	138_V	0.503	1.00
283_F	288_P	0.502	1.00
119_V	161_V	0.501	1.00
57_S	187_V	0.500	1.00
274_L	282_R	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
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HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4ry2A	2	0.7399	100	0.223	Contact Map
4f4cA	1	0.7337	100	0.226	Contact Map
3tuiC	2	0.9288	100	0.245	Contact Map
4mrsA	2	0.7988	100	0.247	Contact Map
4q4hB	1	0.7709	100	0.248	Contact Map
4u00A	1	0.7214	100	0.248	Contact Map
4q9hA	1	0.774	100	0.249	Contact Map
4ymuJ	2	0.7152	100	0.251	Contact Map
4a82A	2	0.7709	100	0.252	Contact Map
3zdqA	2	0.7337	100	0.252	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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