Q97VI1 - SULSO - GREMLIN Contacts

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Q97VI1 - Rubrerythrin (Rr)

UniProt:	Q97VI1	Sequences: MKELKGTKTAENLRHAFCGEAMANRRYLYFAKRADEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGIGDPATDKPIGTLEQMLESAVAGETYEWTQMYPGYAKVAREEGFNEIAEWFETLARAEKSHAEKFTGVLNQLKGGK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	144 (128)
Sequences:	1622 (944)
Seq/√Len:	83.4

SULSO - Q97VI1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
80_T	83_Q	3.806	1.00
108_R	120_E	3.671	1.00
105_K	109_E	2.542	1.00
102_G	106_V	2.364	1.00
138_N	142_G	2.346	1.00
86_E	141_K	2.220	1.00
30_F	87_S	2.146	1.00
82_E	137_L	2.139	1.00
63_F	118_W	2.106	1.00
93_T	130_A	1.987	1.00
93_T	97_T	1.948	1.00
47_R	51_E	1.930	1.00
82_E	141_K	1.908	1.00
37_E	81_L	1.801	1.00
40_P	44_G	1.775	1.00
35_D	47_R	1.744	1.00
10_A	64_I	1.672	1.00
8_K	11_E	1.649	1.00
28_L	50_A	1.637	1.00
94_Y	99_M	1.588	1.00
11_E	15_H	1.568	1.00
8_K	106_V	1.554	1.00
33_R	37_E	1.511	0.99
16_A	119_F	1.486	0.99
63_F	115_I	1.462	0.99
117_E	121_T	1.429	0.99
137_L	141_K	1.422	0.99
89_V	134_T	1.409	0.99
60_H	122_L	1.400	0.99
121_T	124_R	1.390	0.99
101_P	105_K	1.386	0.99
86_E	90_A	1.384	0.99
108_R	113_N	1.373	0.99
24_N	28_L	1.373	0.99
130_A	134_T	1.333	0.99
35_D	40_P	1.309	0.98
8_K	109_E	1.300	0.98
28_L	47_R	1.298	0.98
108_R	116_A	1.286	0.98
127_K	131_E	1.276	0.98
60_H	99_M	1.276	0.98
4_L	7_T	1.272	0.98
102_G	105_K	1.258	0.98
6_G	10_A	1.254	0.98
59_G	118_W	1.237	0.98
33_R	36_E	1.186	0.97
104_A	120_E	1.183	0.97
25_R	54_T	1.163	0.97
33_R	78_I	1.161	0.97
81_L	84_M	1.158	0.97
21_A	25_R	1.155	0.97
134_T	138_N	1.150	0.97
35_D	43_A	1.138	0.96
51_E	54_T	1.114	0.96
94_Y	103_Y	1.096	0.95
32_K	62_D	1.093	0.95
66_Q	78_I	1.090	0.95
41_E	139_Q	1.088	0.95
24_N	54_T	1.087	0.95
11_E	14_R	1.067	0.95
39_Y	140_L	1.053	0.94
40_P	43_A	1.049	0.94
124_R	127_K	1.044	0.94
25_R	28_L	1.044	0.94
14_R	64_I	1.036	0.94
60_H	118_W	1.027	0.94
94_Y	98_Q	1.022	0.93
98_Q	102_G	1.019	0.93
15_H	102_G	1.010	0.93
79_G	83_Q	1.005	0.93
43_A	47_R	0.994	0.92
19_G	23_A	0.980	0.92
138_N	141_K	0.974	0.92
17_F	22_M	0.964	0.91
86_E	134_T	0.960	0.91
18_C	22_M	0.952	0.91
59_G	63_F	0.937	0.90
49_I	132_K	0.936	0.90
105_K	108_R	0.932	0.90
31_A	47_R	0.930	0.90
15_H	103_Y	0.928	0.89
45_L	136_V	0.911	0.89
131_E	135_G	0.909	0.89
28_L	51_E	0.909	0.89
128_S	131_E	0.907	0.88
59_G	125_A	0.894	0.88
82_E	86_E	0.891	0.88
12_N	106_V	0.889	0.87
61_L	66_Q	0.888	0.87
118_W	122_L	0.887	0.87
32_K	55_A	0.887	0.87
113_N	117_E	0.884	0.87
15_H	99_M	0.879	0.87
19_G	91_G	0.877	0.87
96_W	127_K	0.877	0.87
108_R	117_E	0.875	0.87
28_L	54_T	0.866	0.86
46_L	88_A	0.851	0.85
93_T	96_W	0.844	0.85
29_Y	58_F	0.843	0.84
24_N	50_A	0.840	0.84
86_E	137_L	0.837	0.84
54_T	58_F	0.836	0.84
26_R	60_H	0.831	0.84
91_G	99_M	0.824	0.83
32_K	36_E	0.817	0.83
97_T	130_A	0.816	0.82
7_T	112_F	0.813	0.82
82_E	140_L	0.805	0.82
15_H	94_Y	0.797	0.81
115_I	118_W	0.796	0.81
104_A	123_A	0.795	0.81
42_I	81_L	0.782	0.80
90_A	134_T	0.780	0.80
32_K	54_T	0.779	0.79
30_F	65_R	0.779	0.79
83_Q	86_E	0.770	0.79
96_W	130_A	0.768	0.79
91_G	95_E	0.768	0.79
135_G	138_N	0.760	0.78
113_N	120_E	0.760	0.78
33_R	80_T	0.756	0.77
116_A	120_E	0.754	0.77
9_T	12_N	0.740	0.76
89_V	137_L	0.739	0.76
5_K	10_A	0.739	0.76
89_V	130_A	0.734	0.75
10_A	14_R	0.733	0.75
121_T	125_A	0.730	0.75
19_G	95_E	0.728	0.75
32_K	58_F	0.724	0.74
114_E	117_E	0.720	0.74
13_L	60_H	0.712	0.73
54_T	62_D	0.707	0.73
60_H	119_F	0.702	0.72
89_V	93_T	0.699	0.72
121_T	127_K	0.691	0.71
59_G	121_T	0.688	0.71
79_G	84_M	0.688	0.71
17_F	57_A	0.687	0.70
104_A	108_R	0.683	0.70
120_E	124_R	0.672	0.69
78_I	87_S	0.667	0.68
26_R	65_R	0.664	0.68
29_Y	32_K	0.662	0.68
30_F	84_M	0.652	0.66
41_E	45_L	0.644	0.65
102_G	109_E	0.643	0.65
105_K	120_E	0.640	0.65
16_A	60_H	0.635	0.64
27_Y	95_E	0.634	0.64
52_G	125_A	0.627	0.63
61_L	65_R	0.626	0.63
104_A	116_A	0.625	0.63
37_E	79_G	0.622	0.63
124_R	140_L	0.609	0.61
65_R	87_S	0.609	0.61
25_R	29_Y	0.600	0.60
65_R	79_G	0.599	0.60
59_G	122_L	0.597	0.60
63_F	114_E	0.586	0.58
61_L	78_I	0.582	0.58
39_Y	81_L	0.578	0.57
105_K	113_N	0.574	0.57
118_W	125_A	0.573	0.57
53_E	92_E	0.569	0.56
53_E	126_E	0.563	0.55
60_H	125_A	0.560	0.55
8_K	102_G	0.558	0.55
106_V	109_E	0.556	0.54
52_G	128_S	0.548	0.53
106_V	110_E	0.540	0.52
42_I	140_L	0.536	0.52
8_K	15_H	0.534	0.51
53_E	56_H	0.532	0.51
37_E	84_M	0.531	0.51
4_L	115_I	0.530	0.51
48_S	52_G	0.529	0.51
14_R	22_M	0.528	0.51
11_E	106_V	0.527	0.50
103_Y	106_V	0.525	0.50
49_I	133_F	0.522	0.50
44_G	48_S	0.520	0.50
128_S	135_G	0.519	0.49
24_N	51_E	0.518	0.49
58_F	62_D	0.506	0.48
56_H	92_E	0.504	0.47
21_A	28_L	0.501	0.47
14_R	66_Q	0.501	0.47
96_W	133_F	0.500	0.47
87_S	90_A	0.500	0.47
112_F	115_I	0.500	0.47

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1lkoA	3	0.9861	100	0.392	Contact Map
1yuzA	2	0.9931	100	0.429	Contact Map
3pwfA	4	0.9097	100	0.452	Contact Map
3qhbA	1	1	99.9	0.487	Contact Map
1j30A	5	0.9792	99.9	0.487	Contact Map
4di0A	2	0.9722	99.9	0.523	Contact Map
2oh3A	2	0.9236	99.8	0.598	Contact Map
3unoA	6	0.9583	99.7	0.616	Contact Map
2fzfA	2	0.9514	99.7	0.637	Contact Map
3fvbA	6	0.9861	99.6	0.661	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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