GREMLIN Database
Q97VI1 - Rubrerythrin (Rr)
UniProt: Q97VI1 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
Length: 144 (128)
Sequences: 1622 (944)
Seq/√Len: 83.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
80_T83_Q3.8061.00
108_R120_E3.6711.00
105_K109_E2.5421.00
102_G106_V2.3641.00
138_N142_G2.3461.00
86_E141_K2.2201.00
30_F87_S2.1461.00
82_E137_L2.1391.00
63_F118_W2.1061.00
93_T130_A1.9871.00
93_T97_T1.9481.00
47_R51_E1.9301.00
82_E141_K1.9081.00
37_E81_L1.8011.00
40_P44_G1.7751.00
35_D47_R1.7441.00
10_A64_I1.6721.00
8_K11_E1.6491.00
28_L50_A1.6371.00
94_Y99_M1.5881.00
11_E15_H1.5681.00
8_K106_V1.5541.00
33_R37_E1.5110.99
16_A119_F1.4860.99
63_F115_I1.4620.99
117_E121_T1.4290.99
137_L141_K1.4220.99
89_V134_T1.4090.99
60_H122_L1.4000.99
121_T124_R1.3900.99
101_P105_K1.3860.99
86_E90_A1.3840.99
108_R113_N1.3730.99
24_N28_L1.3730.99
130_A134_T1.3330.99
35_D40_P1.3090.98
8_K109_E1.3000.98
28_L47_R1.2980.98
108_R116_A1.2860.98
127_K131_E1.2760.98
60_H99_M1.2760.98
4_L7_T1.2720.98
102_G105_K1.2580.98
6_G10_A1.2540.98
59_G118_W1.2370.98
33_R36_E1.1860.97
104_A120_E1.1830.97
25_R54_T1.1630.97
33_R78_I1.1610.97
81_L84_M1.1580.97
21_A25_R1.1550.97
134_T138_N1.1500.97
35_D43_A1.1380.96
51_E54_T1.1140.96
94_Y103_Y1.0960.95
32_K62_D1.0930.95
66_Q78_I1.0900.95
41_E139_Q1.0880.95
24_N54_T1.0870.95
11_E14_R1.0670.95
39_Y140_L1.0530.94
40_P43_A1.0490.94
124_R127_K1.0440.94
25_R28_L1.0440.94
14_R64_I1.0360.94
60_H118_W1.0270.94
94_Y98_Q1.0220.93
98_Q102_G1.0190.93
15_H102_G1.0100.93
79_G83_Q1.0050.93
43_A47_R0.9940.92
19_G23_A0.9800.92
138_N141_K0.9740.92
17_F22_M0.9640.91
86_E134_T0.9600.91
18_C22_M0.9520.91
59_G63_F0.9370.90
49_I132_K0.9360.90
105_K108_R0.9320.90
31_A47_R0.9300.90
15_H103_Y0.9280.89
45_L136_V0.9110.89
131_E135_G0.9090.89
28_L51_E0.9090.89
128_S131_E0.9070.88
59_G125_A0.8940.88
82_E86_E0.8910.88
12_N106_V0.8890.87
61_L66_Q0.8880.87
118_W122_L0.8870.87
32_K55_A0.8870.87
113_N117_E0.8840.87
15_H99_M0.8790.87
19_G91_G0.8770.87
96_W127_K0.8770.87
108_R117_E0.8750.87
28_L54_T0.8660.86
46_L88_A0.8510.85
93_T96_W0.8440.85
29_Y58_F0.8430.84
24_N50_A0.8400.84
86_E137_L0.8370.84
54_T58_F0.8360.84
26_R60_H0.8310.84
91_G99_M0.8240.83
32_K36_E0.8170.83
97_T130_A0.8160.82
7_T112_F0.8130.82
82_E140_L0.8050.82
15_H94_Y0.7970.81
115_I118_W0.7960.81
104_A123_A0.7950.81
42_I81_L0.7820.80
90_A134_T0.7800.80
32_K54_T0.7790.79
30_F65_R0.7790.79
83_Q86_E0.7700.79
96_W130_A0.7680.79
91_G95_E0.7680.79
135_G138_N0.7600.78
113_N120_E0.7600.78
33_R80_T0.7560.77
116_A120_E0.7540.77
9_T12_N0.7400.76
89_V137_L0.7390.76
5_K10_A0.7390.76
89_V130_A0.7340.75
10_A14_R0.7330.75
121_T125_A0.7300.75
19_G95_E0.7280.75
32_K58_F0.7240.74
114_E117_E0.7200.74
13_L60_H0.7120.73
54_T62_D0.7070.73
60_H119_F0.7020.72
89_V93_T0.6990.72
121_T127_K0.6910.71
59_G121_T0.6880.71
79_G84_M0.6880.71
17_F57_A0.6870.70
104_A108_R0.6830.70
120_E124_R0.6720.69
78_I87_S0.6670.68
26_R65_R0.6640.68
29_Y32_K0.6620.68
30_F84_M0.6520.66
41_E45_L0.6440.65
102_G109_E0.6430.65
105_K120_E0.6400.65
16_A60_H0.6350.64
27_Y95_E0.6340.64
52_G125_A0.6270.63
61_L65_R0.6260.63
104_A116_A0.6250.63
37_E79_G0.6220.63
124_R140_L0.6090.61
65_R87_S0.6090.61
25_R29_Y0.6000.60
65_R79_G0.5990.60
59_G122_L0.5970.60
63_F114_E0.5860.58
61_L78_I0.5820.58
39_Y81_L0.5780.57
105_K113_N0.5740.57
118_W125_A0.5730.57
53_E92_E0.5690.56
53_E126_E0.5630.55
60_H125_A0.5600.55
8_K102_G0.5580.55
106_V109_E0.5560.54
52_G128_S0.5480.53
106_V110_E0.5400.52
42_I140_L0.5360.52
8_K15_H0.5340.51
53_E56_H0.5320.51
37_E84_M0.5310.51
4_L115_I0.5300.51
48_S52_G0.5290.51
14_R22_M0.5280.51
11_E106_V0.5270.50
103_Y106_V0.5250.50
49_I133_F0.5220.50
44_G48_S0.5200.50
128_S135_G0.5190.49
24_N51_E0.5180.49
58_F62_D0.5060.48
56_H92_E0.5040.47
21_A28_L0.5010.47
14_R66_Q0.5010.47
96_W133_F0.5000.47
87_S90_A0.5000.47
112_F115_I0.5000.47
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1lkoA 3 0.9861 100 0.392 Contact Map
1yuzA 2 0.9931 100 0.429 Contact Map
3pwfA 4 0.9097 100 0.452 Contact Map
3qhbA 1 1 99.9 0.487 Contact Map
1j30A 5 0.9792 99.9 0.487 Contact Map
4di0A 2 0.9722 99.9 0.523 Contact Map
2oh3A 2 0.9236 99.8 0.598 Contact Map
3unoA 6 0.9583 99.7 0.616 Contact Map
2fzfA 2 0.9514 99.7 0.637 Contact Map
3fvbA 6 0.9861 99.6 0.661 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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