Q97VI0 - SULSO - GREMLIN Contacts

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Q97VI0 - Glycerol-3-phosphate dehydrogenase chain C (Anaerobic) (GlpC)

UniProt:	Q97VI0	Sequences: MYSLNPSNSTFFDSNKLLSEFIRQASVCHGCRLCFNYCDSFPLMFTYTDKKGPKNLTLDDLFNVASKCFHCKMCYVNCPYVPPHEFNMDFPSLMEWAWLYYKKNRGLTVRDFIFEMLDGVKFARPLAKVIMEKNKELLGIHKEAPTLPVAEKGLRERVKPKRIDSPKARVALFPTCLIENFFPEIGEDLVEIYNELGIEVIIPNFVCCGAPMLDSGDVDRLKKNAEYNIKIIEDLIKEGYDVVSPIPTCTLMIKEYKKVLDREVPKVYDAMEYLLKLKNEGKIELKGKIEKSVYYHPPCHLKFLQLGLPGVRLLRSMGAKVDISNNGCSGIDGGWGLRNYDTAKRVGSKMMEAFKQSKADLFSTECPLAGLQIEKSSGRRPLHPIQLLKEAMKNG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	395 (358)
Sequences:	5761 (3980)
Seq/√Len:	210.3

ECOLI - GLCF GLPC YDIJ YKGE
BACSU - GLCF FADF LUTA
HALSA - Q9HHI4 Q9HNS2 Q9HMZ3 Q9HMR2
SULSO - Q97VI0 Q97U61 Q7LX43 Q97U89 Q97Z15 Q97Z11 Q97W77

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
382_L	390_E	4.852	1.00
292_S	320_K	4.749	1.00
191_E	389_K	4.711	1.00
169_R	199_E	4.186	1.00
188_D	386_Q	4.145	1.00
275_L	312_R	3.572	1.00
292_S	322_D	3.441	1.00
268_Y	276_K	3.372	1.00
270_A	385_I	3.326	1.00
268_Y	272_E	2.913	1.00
207_C	249_C	2.816	1.00
189_L	245_P	2.781	1.00
217_D	220_R	2.566	1.00
363_S	387_L	2.539	1.00
311_V	323_I	2.495	1.00
157_R	187_E	2.430	1.00
184_E	386_Q	2.330	1.00
291_K	361_L	2.269	1.00
208_C	249_C	2.266	1.00
268_Y	273_Y	2.261	1.00
176_C	207_C	2.258	1.00
178_I	186_G	2.192	1.00
293_V	387_L	2.187	1.00
169_R	240_Y	2.164	1.00
89_D	92_S	2.139	1.00
226_E	230_K	2.130	1.00
324_S	354_F	2.121	1.00
124_R	127_A	2.081	1.00
185_I	386_Q	2.078	1.00
291_K	360_D	2.060	1.00
170_V	273_Y	2.053	1.00
168_A	198_I	2.051	1.00
198_I	273_Y	2.030	1.00
312_R	315_R	2.026	1.00
172_L	245_P	1.987	1.00
244_S	250_T	1.985	1.00
206_V	227_Y	1.969	1.00
297_P	311_V	1.925	1.00
225_A	256_Y	1.908	1.00
196_L	392_M	1.900	1.00
340_Y	344_K	1.894	1.00
294_Y	324_S	1.855	1.00
190_V	200_V	1.851	1.00
273_Y	277_L	1.851	1.00
135_K	138_L	1.803	1.00
222_K	226_E	1.793	1.00
254_K	272_E	1.789	1.00
176_C	249_C	1.778	1.00
195_E	389_K	1.773	1.00
311_V	315_R	1.741	1.00
192_I	388_L	1.732	1.00
235_L	239_G	1.677	1.00
294_Y	357_S	1.646	1.00
43_L	345_R	1.641	1.00
347_G	351_M	1.637	1.00
351_M	355_K	1.635	1.00
272_E	276_K	1.632	1.00
127_A	131_M	1.631	1.00
189_L	193_Y	1.613	1.00
131_M	134_N	1.602	1.00
169_R	201_I	1.588	1.00
241_D	268_Y	1.584	1.00
188_D	389_K	1.571	1.00
292_S	360_D	1.568	1.00
108_T	111_D	1.563	1.00
176_C	208_C	1.557	1.00
189_L	270_A	1.556	1.00
135_K	142_K	1.534	1.00
138_L	141_H	1.531	1.00
243_V	273_Y	1.518	1.00
266_K	276_K	1.510	1.00
361_L	382_L	1.474	1.00
279_N	312_R	1.467	1.00
152_K	157_R	1.463	1.00
293_V	319_A	1.451	1.00
170_V	200_V	1.442	1.00
344_K	376_S	1.436	1.00
274_L	388_L	1.412	1.00
109_V	112_F	1.402	1.00
230_K	233_E	1.379	1.00
171_A	239_G	1.372	1.00
269_D	273_Y	1.368	1.00
272_E	306_L	1.359	1.00
380_R	390_E	1.355	1.00
170_V	243_V	1.355	1.00
213_L	252_M	1.354	1.00
121_K	125_P	1.351	1.00
210_A	248_T	1.348	1.00
298_P	364_T	1.335	1.00
274_L	313_L	1.331	1.00
272_E	309_P	1.330	1.00
123_A	127_A	1.329	1.00
235_L	238_E	1.321	1.00
165_S	199_E	1.313	1.00
354_F	362_F	1.310	1.00
276_K	280_E	1.307	1.00
192_I	385_I	1.305	1.00
192_I	392_M	1.304	1.00
75_Y	89_D	1.301	1.00
103_K	219_D	1.299	1.00
212_M	220_R	1.295	1.00
347_G	376_S	1.289	1.00
127_A	130_I	1.288	1.00
382_L	386_Q	1.278	1.00
158_V	190_V	1.271	1.00
290_E	320_K	1.271	1.00
348_S	355_K	1.270	1.00
194_N	200_V	1.268	1.00
35_F	50_K	1.264	1.00
192_I	389_K	1.260	1.00
198_I	277_L	1.255	1.00
269_D	272_E	1.248	1.00
241_D	273_Y	1.240	1.00
147_L	150_A	1.239	1.00
271_M	275_L	1.239	1.00
293_V	363_S	1.227	1.00
90_F	94_M	1.214	1.00
94_M	98_W	1.212	1.00
314_L	363_S	1.204	1.00
295_Y	310_G	1.201	1.00
370_G	381_P	1.196	1.00
352_E	356_Q	1.194	1.00
348_S	352_E	1.193	1.00
171_A	235_L	1.186	1.00
122_F	125_P	1.181	1.00
124_R	131_M	1.180	1.00
306_L	309_P	1.178	1.00
365_E	384_P	1.177	1.00
354_F	373_I	1.177	1.00
136_E	142_K	1.169	1.00
246_I	366_C	1.166	1.00
289_I	391_A	1.160	1.00
291_K	390_E	1.158	1.00
49_D	67_K	1.158	1.00
123_A	126_L	1.148	1.00
167_K	199_E	1.141	1.00
190_V	194_N	1.139	1.00
113_I	116_M	1.138	1.00
171_A	240_Y	1.138	1.00
244_S	253_I	1.134	1.00
54_K	57_T	1.129	1.00
189_L	385_I	1.128	1.00
382_L	387_L	1.118	1.00
121_K	124_R	1.113	1.00
351_M	376_S	1.109	1.00
191_E	195_E	1.106	1.00
276_K	309_P	1.103	1.00
308_L	311_V	1.099	1.00
174_P	186_G	1.094	1.00
129_V	133_K	1.092	1.00
272_E	278_K	1.084	1.00
274_L	278_K	1.084	1.00
72_K	75_Y	1.080	1.00
130_I	133_K	1.076	1.00
260_L	263_E	1.076	1.00
224_N	228_N	1.070	1.00
210_A	214_D	1.068	1.00
165_S	168_A	1.063	1.00
155_R	179_E	1.063	1.00
329_S	369_A	1.060	1.00
122_F	126_L	1.060	1.00
128_K	132_E	1.056	1.00
187_E	191_E	1.054	1.00
129_V	132_E	1.053	1.00
340_Y	375_K	1.053	1.00
41_F	45_F	1.049	1.00
308_L	312_R	1.047	1.00
132_E	135_K	1.045	1.00
213_L	221_L	1.043	1.00
175_T	246_I	1.042	1.00
213_L	218_V	1.038	1.00
309_P	312_R	1.035	1.00
35_F	41_F	1.033	1.00
317_M	391_A	1.033	1.00
47_Y	51_K	1.032	1.00
136_E	139_G	1.030	1.00
226_E	263_E	1.030	1.00
47_Y	52_G	1.029	1.00
293_V	361_L	1.029	1.00
35_F	47_Y	1.029	1.00
37_Y	77_N	1.018	1.00
62_F	66_S	1.013	1.00
312_R	316_S	1.013	1.00
355_K	377_S	1.013	1.00
228_N	256_Y	1.012	1.00
334_G	338_R	1.011	1.00
99_L	218_V	1.009	1.00
130_I	134_N	1.003	1.00
138_L	142_K	1.002	1.00
212_M	224_N	1.002	1.00
331_I	336_G	0.995	1.00
314_L	319_A	0.993	1.00
362_F	373_I	0.990	1.00
341_D	345_R	0.987	1.00
166_P	199_E	0.987	1.00
112_F	116_M	0.981	1.00
289_I	319_A	0.974	1.00
43_L	342_T	0.965	1.00
192_I	313_L	0.964	1.00
277_L	280_E	0.961	1.00
234_D	238_E	0.960	1.00
257_K	264_V	0.960	1.00
344_K	348_S	0.950	1.00
235_L	240_Y	0.948	0.99
191_E	194_N	0.947	0.99
123_A	131_M	0.946	0.99
139_G	142_K	0.945	0.99
29_H	35_F	0.945	0.99
145_P	148_P	0.940	0.99
275_L	279_N	0.936	0.99
250_T	304_L	0.935	0.99
109_V	113_I	0.932	0.99
347_G	372_Q	0.929	0.99
363_S	384_P	0.928	0.99
75_Y	91_P	0.928	0.99
145_P	149_V	0.926	0.99
241_D	266_K	0.925	0.99
297_P	323_I	0.925	0.99
137_L	141_H	0.924	0.99
96_W	99_L	0.922	0.99
153_G	157_R	0.921	0.99
185_I	188_D	0.918	0.99
101_Y	105_R	0.912	0.99
349_K	353_A	0.911	0.99
195_E	392_M	0.910	0.99
111_D	115_E	0.910	0.99
73_M	77_N	0.909	0.99
214_D	248_T	0.906	0.99
271_M	277_L	0.900	0.99
46_T	49_D	0.895	0.99
224_N	227_Y	0.891	0.99
172_L	189_L	0.887	0.99
153_G	156_E	0.881	0.99
115_E	118_D	0.878	0.99
389_K	392_M	0.873	0.99
169_R	238_E	0.873	0.99
297_P	310_G	0.872	0.99
99_L	103_K	0.868	0.99
297_P	307_G	0.867	0.99
124_R	128_K	0.867	0.99
42_P	349_K	0.866	0.99
72_K	303_F	0.851	0.99
116_M	119_G	0.851	0.99
154_L	186_G	0.850	0.99
100_Y	104_N	0.843	0.99
116_M	120_V	0.842	0.99
285_L	388_L	0.841	0.99
232_I	239_G	0.841	0.99
251_L	303_F	0.838	0.99
231_I	234_D	0.838	0.99
317_M	388_L	0.837	0.99
121_K	127_A	0.835	0.99
187_E	190_V	0.834	0.99
108_T	112_F	0.832	0.99
315_R	321_V	0.831	0.99
270_A	274_L	0.830	0.99
313_L	388_L	0.828	0.99
326_N	350_M	0.826	0.99
277_L	282_K	0.825	0.99
92_S	258_K	0.825	0.99
90_F	93_L	0.825	0.99
172_L	178_I	0.824	0.99
122_F	127_A	0.820	0.99
352_E	355_K	0.819	0.99
40_S	53_P	0.816	0.98
290_E	318_G	0.813	0.98
155_R	158_V	0.812	0.98
154_L	190_V	0.810	0.98
125_P	128_K	0.807	0.98
49_D	64_V	0.806	0.98
284_E	316_S	0.803	0.98
228_N	231_I	0.792	0.98
324_S	357_S	0.791	0.98
230_K	234_D	0.790	0.98
67_K	342_T	0.789	0.98
298_P	366_C	0.788	0.98
146_T	149_V	0.787	0.98
267_V	271_M	0.785	0.98
348_S	351_M	0.780	0.98
364_T	370_G	0.780	0.98
343_A	372_Q	0.779	0.98
294_Y	362_F	0.776	0.98
163_I	166_P	0.775	0.98
149_V	153_G	0.774	0.98
295_Y	321_V	0.774	0.98
207_C	211_P	0.771	0.98
267_V	273_Y	0.770	0.98
193_Y	198_I	0.767	0.98
168_A	277_L	0.766	0.98
220_R	223_K	0.766	0.98
147_L	151_E	0.764	0.98
44_M	342_T	0.762	0.98
148_P	151_E	0.761	0.98
247_P	298_P	0.759	0.98
261_D	265_P	0.759	0.98
47_Y	50_K	0.758	0.98
126_L	129_V	0.757	0.98
250_T	254_K	0.754	0.97
151_E	157_R	0.753	0.97
193_Y	243_V	0.753	0.97
386_Q	389_K	0.752	0.97
111_D	114_F	0.752	0.97
148_P	152_K	0.750	0.97
345_R	348_S	0.748	0.97
227_Y	230_K	0.748	0.97
174_P	205_F	0.744	0.97
154_L	158_V	0.742	0.97
182_F	367_P	0.742	0.97
215_S	334_G	0.740	0.97
380_R	386_Q	0.738	0.97
308_L	315_R	0.738	0.97
193_Y	270_A	0.736	0.97
128_K	131_M	0.735	0.97
131_M	135_K	0.734	0.97
107_L	217_D	0.734	0.97
70_H	300_H	0.734	0.97
190_V	202_I	0.733	0.97
172_L	186_G	0.732	0.97
196_L	277_L	0.731	0.97
228_N	253_I	0.729	0.97
69_F	346_V	0.729	0.97
182_F	185_I	0.729	0.97
42_P	327_G	0.728	0.97
225_A	259_V	0.726	0.97
271_M	384_P	0.722	0.97
112_F	115_E	0.721	0.97
110_R	117_L	0.719	0.97
152_K	156_E	0.719	0.97
242_V	267_V	0.716	0.97
254_K	304_L	0.714	0.96
29_H	80_Y	0.713	0.96
285_L	392_M	0.712	0.96
290_E	319_A	0.712	0.96
223_K	226_E	0.709	0.96
52_G	65_A	0.707	0.96
142_K	146_T	0.707	0.96
351_M	377_S	0.707	0.96
172_L	200_V	0.706	0.96
161_K	166_P	0.705	0.96
271_M	365_E	0.701	0.96
183_P	187_E	0.701	0.96
294_Y	354_F	0.700	0.96
59_D	62_F	0.694	0.96
174_P	202_I	0.693	0.96
40_S	49_D	0.692	0.96
189_L	243_V	0.691	0.96
192_I	274_L	0.690	0.96
43_L	349_K	0.688	0.96
221_L	252_M	0.686	0.96
322_D	357_S	0.686	0.96
248_T	366_C	0.685	0.96
147_L	157_R	0.684	0.96
215_S	338_R	0.684	0.96
125_P	129_V	0.682	0.95
182_F	371_L	0.682	0.95
182_F	386_Q	0.681	0.95
264_V	273_Y	0.681	0.95
223_K	227_Y	0.680	0.95
114_F	117_L	0.679	0.95
87_N	93_L	0.678	0.95
173_F	228_N	0.678	0.95
267_V	272_E	0.678	0.95
137_L	140_I	0.676	0.95
294_Y	359_A	0.675	0.95
184_E	187_E	0.673	0.95
124_R	134_N	0.672	0.95
46_T	51_K	0.672	0.95
321_V	324_S	0.672	0.95
152_K	155_R	0.671	0.95
212_M	217_D	0.670	0.95
220_R	224_N	0.669	0.95
178_I	245_P	0.665	0.95
295_Y	307_G	0.664	0.95
95_E	98_W	0.664	0.95
229_I	233_E	0.663	0.95
123_A	130_I	0.660	0.95
47_Y	53_P	0.654	0.94
250_T	267_V	0.654	0.94
278_K	313_L	0.653	0.94
28_C	34_C	0.653	0.94
275_L	313_L	0.653	0.94
120_V	124_R	0.648	0.94
146_T	150_A	0.648	0.94
150_A	183_P	0.646	0.94
248_T	300_H	0.646	0.94
50_K	53_P	0.643	0.94
204_N	235_L	0.642	0.94
110_R	113_I	0.641	0.94
355_K	378_G	0.641	0.94
97_A	101_Y	0.640	0.94
170_V	241_D	0.639	0.94
91_P	94_M	0.639	0.94
30_G	41_F	0.635	0.93
288_K	319_A	0.635	0.93
136_E	140_I	0.635	0.93
218_V	222_K	0.631	0.93
270_A	273_Y	0.631	0.93
300_H	367_P	0.629	0.93
110_R	115_E	0.629	0.93
110_R	114_F	0.629	0.93
171_A	203_P	0.628	0.93
34_C	38_C	0.627	0.93
162_R	194_N	0.625	0.93
40_S	366_C	0.623	0.93
353_A	356_Q	0.621	0.93
93_L	96_W	0.621	0.93
54_K	58_L	0.619	0.92
58_L	61_L	0.619	0.92
331_I	372_Q	0.619	0.92
145_P	150_A	0.616	0.92
173_F	208_C	0.615	0.92
41_F	51_K	0.614	0.92
299_C	328_C	0.612	0.92
269_D	277_L	0.611	0.92
141_H	147_L	0.608	0.92
96_W	100_Y	0.608	0.92
275_L	309_P	0.606	0.92
24_Q	27_V	0.605	0.92
294_Y	321_V	0.603	0.91
117_L	120_V	0.603	0.91
275_L	316_S	0.601	0.91
341_D	344_K	0.599	0.91
361_L	390_E	0.596	0.91
242_V	253_I	0.592	0.91
225_A	260_L	0.590	0.91
351_M	373_I	0.590	0.91
120_V	123_A	0.589	0.91
142_K	149_V	0.587	0.90
89_D	94_M	0.586	0.90
273_Y	276_K	0.584	0.90
150_A	153_G	0.584	0.90
188_D	192_I	0.580	0.90
335_W	339_N	0.579	0.90
206_V	231_I	0.578	0.90
283_I	286_K	0.578	0.90
161_K	199_E	0.578	0.90
298_P	365_E	0.578	0.90
89_D	93_L	0.578	0.90
283_I	392_M	0.578	0.90
161_K	164_D	0.577	0.90
175_T	249_C	0.576	0.90
44_M	49_D	0.576	0.90
154_L	157_R	0.573	0.89
139_G	147_L	0.573	0.89
36_N	77_N	0.571	0.89
150_A	155_R	0.569	0.89
151_E	158_V	0.569	0.89
282_K	285_L	0.568	0.89
125_P	131_M	0.568	0.89
107_L	111_D	0.567	0.89
41_F	47_Y	0.567	0.89
278_K	316_S	0.567	0.89
273_Y	278_K	0.565	0.89
88_M	94_M	0.565	0.89
75_Y	92_S	0.565	0.89
373_I	376_S	0.565	0.89
250_T	269_D	0.564	0.89
88_M	93_L	0.564	0.89
349_K	352_E	0.563	0.88
137_L	142_K	0.562	0.88
53_P	366_C	0.561	0.88
141_H	146_T	0.560	0.88
336_G	368_L	0.557	0.88
41_F	50_K	0.555	0.88
176_C	246_I	0.554	0.88
221_L	259_V	0.554	0.88
59_D	63_N	0.553	0.88
61_L	65_A	0.553	0.88
306_L	310_G	0.552	0.88
121_K	130_I	0.551	0.87
134_N	138_L	0.550	0.87
246_I	367_P	0.548	0.87
292_S	380_R	0.547	0.87
35_F	51_K	0.547	0.87
247_P	303_F	0.546	0.87
315_R	320_K	0.546	0.87
72_K	91_P	0.545	0.87
141_H	145_P	0.544	0.87
229_I	260_L	0.544	0.87
35_F	77_N	0.542	0.87
98_W	101_Y	0.540	0.86
254_K	306_L	0.540	0.86
121_K	126_L	0.538	0.86
30_G	50_K	0.536	0.86
265_P	268_Y	0.536	0.86
170_V	193_Y	0.535	0.86
201_I	235_L	0.534	0.86
193_Y	200_V	0.534	0.86
289_I	317_M	0.534	0.86
202_I	205_F	0.532	0.86
40_S	52_G	0.532	0.86
279_N	316_S	0.532	0.86
387_L	390_E	0.531	0.85
351_M	354_F	0.531	0.85
162_R	166_P	0.531	0.85
160_P	163_I	0.531	0.85
251_L	255_E	0.531	0.85
41_F	46_T	0.530	0.85
104_N	111_D	0.530	0.85
135_K	139_G	0.529	0.85
325_N	353_A	0.526	0.85
373_I	377_S	0.526	0.85
61_L	64_V	0.525	0.85
147_L	158_V	0.522	0.84
126_L	132_E	0.522	0.84
43_L	346_V	0.522	0.84
268_Y	278_K	0.521	0.84
211_P	246_I	0.521	0.84
168_A	240_Y	0.521	0.84
230_K	260_L	0.520	0.84
355_K	359_A	0.517	0.84
246_I	249_C	0.517	0.84
186_G	190_V	0.516	0.84
102_K	106_G	0.516	0.84
129_V	134_N	0.515	0.84
291_K	319_A	0.515	0.84
28_C	38_C	0.515	0.84
21_F	25_A	0.515	0.84
230_K	263_E	0.515	0.84
357_S	361_L	0.514	0.84
267_V	270_A	0.512	0.83
80_Y	88_M	0.510	0.83
289_I	292_S	0.510	0.83
62_F	105_R	0.506	0.83
92_S	96_W	0.506	0.83
321_V	384_P	0.505	0.82
210_A	368_L	0.505	0.82
173_F	253_I	0.505	0.82
270_A	277_L	0.504	0.82
222_K	261_D	0.503	0.82
301_L	306_L	0.503	0.82
136_E	141_H	0.502	0.82
126_L	131_M	0.501	0.82
142_K	150_A	0.501	0.82
211_P	214_D	0.501	0.82
31_C	34_C	0.500	0.82
295_Y	365_E	0.500	0.82

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3kwlA	1	0.8304	100	0.491	Contact Map
3cf4A	2	0.8532	100	0.573	Contact Map
3c8yA	1	0.8051	99.7	0.812	Contact Map
2h88B	1	0.2506	99.2	0.864	Contact Map
2wdqB	1	0.2532	99.2	0.864	Contact Map
1kf6B	1	0.2684	99.2	0.865	Contact Map
4ysxB	1	0.281	99.1	0.869	Contact Map
4p6vA	1	0.1924	99	0.872	Contact Map
2bs2B	1	0.2481	98.9	0.878	Contact Map
1hfeL	2	0.7468	98.5	0.894	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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