Q97VH9 - SULSO - GREMLIN Contacts

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Q97VH9 - Uncharacterized protein

UniProt:	Q97VH9	Sequences: MVKITLQDILPWRTYEKVRMDRIRRIIEVKNKRRIELGDRLTLLFENRDTVLQQIQEMVYLDKKEKNEDILEEIKIYSTLLPCDGKIKASLYIHSYDFKDLDWVYDNLKGIYNSVFLRVGNKLIQGIPEGGRDQGREFSTVQYLTFDLEGEKSTDMEVHVIHEKYRYSTKIDKSLAEDLIREAYDICE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	188 (180)
Sequences:	189 (153)
Seq/√Len:	11.4

SULSO - Q97VH9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
71_L	75_K	4.667	1.00
8_D	48_R	3.483	0.98
41_L	44_L	3.442	0.98
41_L	91_L	3.248	0.97
48_R	52_L	3.241	0.97
44_L	91_L	3.170	0.96
138_F	142_Q	3.131	0.96
74_I	78_S	3.062	0.95
4_I	67_N	2.959	0.95
6_L	67_N	2.639	0.90
41_L	160_V	2.384	0.85
8_D	52_L	2.357	0.84
98_F	102_D	2.217	0.80
101_L	143_Y	2.136	0.78
29_V	47_N	2.095	0.76
52_L	67_N	1.962	0.71
121_N	157_E	1.923	0.69
4_I	8_D	1.901	0.69
154_T	180_I	1.892	0.68
113_N	133_D	1.884	0.68
34_R	42_T	1.691	0.59
42_T	74_I	1.664	0.58
10_L	18_V	1.661	0.58
124_I	152_K	1.645	0.57
16_E	60_Y	1.634	0.56
41_L	93_I	1.634	0.56
114_S	125_Q	1.602	0.55
112_Y	138_F	1.551	0.52
4_I	52_L	1.524	0.51
116_F	144_L	1.523	0.51
68_E	164_K	1.512	0.50
104_V	107_N	1.507	0.50
87_I	117_L	1.480	0.49
8_D	44_L	1.473	0.49
127_I	147_D	1.467	0.48
86_K	147_D	1.452	0.47
8_D	89_A	1.437	0.47
132_R	142_Q	1.431	0.46
7_Q	21_D	1.416	0.46
10_L	42_T	1.410	0.45
6_L	70_I	1.410	0.45
7_Q	68_E	1.400	0.45
172_D	175_L	1.399	0.45
79_T	112_Y	1.396	0.45
38_G	73_E	1.358	0.43
23_I	74_I	1.353	0.43
116_F	159_H	1.341	0.42
3_K	114_S	1.326	0.41
118_R	123_L	1.317	0.41
113_N	126_G	1.311	0.41
137_E	143_Y	1.310	0.41
3_K	28_E	1.288	0.40
78_S	81_L	1.279	0.39
87_I	158_V	1.273	0.39
7_Q	113_N	1.270	0.39
44_L	92_Y	1.208	0.36
64_K	69_D	1.200	0.36
123_L	129_E	1.199	0.36
7_Q	177_E	1.193	0.35
83_C	86_K	1.192	0.35
47_N	111_I	1.190	0.35
8_D	67_N	1.189	0.35
39_D	167_Y	1.189	0.35
64_K	76_I	1.181	0.35
76_I	79_T	1.169	0.34
42_T	117_L	1.153	0.33
60_Y	78_S	1.152	0.33
162_H	165_Y	1.147	0.33
51_V	78_S	1.146	0.33
122_K	155_D	1.136	0.33
86_K	95_S	1.135	0.33
60_Y	66_K	1.133	0.33
92_Y	157_E	1.131	0.33
70_I	108_L	1.127	0.32
132_R	139_S	1.116	0.32
29_V	83_C	1.111	0.32
35_I	175_L	1.109	0.32
89_A	146_F	1.076	0.30
29_V	49_D	1.066	0.30
37_L	167_Y	1.062	0.30
84_D	112_Y	1.056	0.29
31_N	117_L	1.047	0.29
36_E	42_T	1.045	0.29
30_K	118_R	1.034	0.29
130_G	145_T	1.024	0.28
134_Q	140_T	1.015	0.28
5_T	175_L	1.006	0.27
38_G	165_Y	0.999	0.27
120_G	164_K	0.989	0.27
154_T	161_I	0.985	0.27
117_L	175_L	0.983	0.27
81_L	91_L	0.963	0.26
163_E	166_R	0.957	0.26
174_S	177_E	0.955	0.25
70_I	132_R	0.951	0.25
96_Y	122_K	0.950	0.25
58_M	73_E	0.947	0.25
109_K	134_Q	0.945	0.25
113_N	171_I	0.944	0.25
36_E	74_I	0.944	0.25
4_I	99_K	0.942	0.25
4_I	55_I	0.932	0.25
93_I	111_I	0.929	0.25
153_S	156_M	0.921	0.24
101_L	137_E	0.920	0.24
72_E	76_I	0.910	0.24
88_K	132_R	0.907	0.24
37_L	132_R	0.907	0.24
65_E	143_Y	0.907	0.24
13_R	70_I	0.897	0.23
11_P	14_T	0.893	0.23
129_E	161_I	0.889	0.23
16_E	66_K	0.881	0.23
61_L	150_G	0.876	0.23
8_D	34_R	0.872	0.23
9_I	29_V	0.872	0.23
12_W	130_G	0.871	0.22
45_F	77_Y	0.870	0.22
119_V	148_L	0.851	0.22
117_L	159_H	0.850	0.22
26_I	124_I	0.849	0.22
9_I	95_S	0.847	0.22
156_M	180_I	0.846	0.22
125_Q	173_K	0.844	0.22
167_Y	172_D	0.842	0.21
84_D	143_Y	0.841	0.21
99_K	102_D	0.840	0.21
67_N	99_K	0.838	0.21
55_I	67_N	0.834	0.21
144_L	163_E	0.830	0.21
109_K	136_R	0.823	0.21
97_D	156_M	0.822	0.21
139_S	159_H	0.815	0.21
109_K	113_N	0.813	0.21
48_R	171_I	0.812	0.21
40_R	95_S	0.809	0.20
10_L	35_I	0.805	0.20
7_Q	171_I	0.798	0.20
22_R	25_R	0.795	0.20
85_G	157_E	0.786	0.20
35_I	117_L	0.785	0.20
53_Q	88_K	0.783	0.20
97_D	103_W	0.780	0.20
39_D	135_G	0.772	0.19
17_K	67_N	0.767	0.19
27_I	100_D	0.765	0.19
88_K	145_T	0.761	0.19
97_D	143_Y	0.760	0.19
17_K	48_R	0.759	0.19
21_D	25_R	0.752	0.19
8_D	91_L	0.752	0.19
5_T	71_L	0.750	0.19
107_N	157_E	0.748	0.19
85_G	153_S	0.746	0.18
56_Q	141_V	0.744	0.18
95_S	101_L	0.744	0.18
67_N	72_E	0.736	0.18
28_E	151_E	0.735	0.18
55_I	94_H	0.735	0.18
5_T	120_G	0.732	0.18
126_G	129_E	0.731	0.18
8_D	81_L	0.722	0.18
23_I	78_S	0.721	0.18
144_L	158_V	0.717	0.18
4_I	17_K	0.710	0.17
115_V	161_I	0.708	0.17
48_R	67_N	0.705	0.17
171_I	175_L	0.703	0.17
83_C	88_K	0.701	0.17
32_K	174_S	0.701	0.17
88_K	92_Y	0.700	0.17
62_D	105_Y	0.698	0.17
87_I	182_E	0.694	0.17
3_K	133_D	0.692	0.17
82_P	108_L	0.692	0.17
79_T	143_Y	0.688	0.17
168_S	181_R	0.683	0.17
34_R	173_K	0.681	0.17
115_V	160_V	0.681	0.17
22_R	48_R	0.681	0.17
39_D	51_V	0.680	0.17
72_E	92_Y	0.679	0.17
107_N	120_G	0.679	0.17
18_V	181_R	0.679	0.17
120_G	150_G	0.674	0.16
73_E	137_E	0.673	0.16
17_K	126_G	0.673	0.16
86_K	128_P	0.672	0.16
71_L	81_L	0.671	0.16
10_L	25_R	0.667	0.16
41_L	92_Y	0.666	0.16
10_L	17_K	0.655	0.16
96_Y	111_I	0.654	0.16
84_D	88_K	0.653	0.16
109_K	133_D	0.650	0.16
91_L	144_L	0.649	0.16
4_I	48_R	0.647	0.16
11_P	95_S	0.645	0.16
9_I	47_N	0.644	0.16
100_D	120_G	0.643	0.16
65_E	145_T	0.638	0.16
37_L	160_V	0.637	0.15
14_T	55_I	0.636	0.15
21_D	68_E	0.631	0.15
51_V	74_I	0.629	0.15
9_I	60_Y	0.627	0.15
44_L	167_Y	0.627	0.15
93_I	163_E	0.627	0.15
15_Y	19_R	0.619	0.15
31_N	169_T	0.619	0.15
18_V	24_R	0.617	0.15
42_T	72_E	0.617	0.15
97_D	101_L	0.616	0.15
100_D	130_G	0.615	0.15
21_D	24_R	0.614	0.15
9_I	65_E	0.614	0.15
39_D	69_D	0.612	0.15
11_P	172_D	0.612	0.15
14_T	85_G	0.610	0.15
71_L	173_K	0.609	0.15
114_S	161_I	0.609	0.15
55_I	85_G	0.608	0.15
171_I	176_A	0.607	0.15
25_R	28_E	0.602	0.15
101_L	128_P	0.600	0.15
7_Q	31_N	0.599	0.15
59_V	137_E	0.597	0.14
160_V	170_K	0.597	0.14
85_G	150_G	0.597	0.14
84_D	137_E	0.593	0.14
114_S	181_R	0.592	0.14
113_N	129_E	0.589	0.14
86_K	145_T	0.588	0.14
30_K	74_I	0.587	0.14
30_K	104_V	0.586	0.14
51_V	167_Y	0.586	0.14
65_E	86_K	0.583	0.14
84_D	128_P	0.573	0.14
62_D	77_Y	0.570	0.14
34_R	135_G	0.569	0.14
10_L	26_I	0.564	0.14
87_I	116_F	0.562	0.14
9_I	56_Q	0.562	0.14
16_E	145_T	0.562	0.14
13_R	132_R	0.560	0.14
36_E	135_G	0.557	0.14
6_L	97_D	0.554	0.13
44_L	160_V	0.550	0.13
85_G	119_V	0.548	0.13
58_M	162_H	0.544	0.13
17_K	20_M	0.543	0.13
17_K	93_I	0.541	0.13
34_R	44_L	0.536	0.13
102_D	154_T	0.534	0.13
160_V	175_L	0.532	0.13
86_K	138_F	0.532	0.13
31_N	68_E	0.529	0.13
32_K	55_I	0.527	0.13
43_L	159_H	0.526	0.13
97_D	155_D	0.526	0.13
153_S	157_E	0.524	0.13
175_L	181_R	0.518	0.13
144_L	151_E	0.517	0.13
43_L	60_Y	0.512	0.13
149_E	178_D	0.510	0.13
58_M	165_Y	0.509	0.12
21_D	28_E	0.508	0.12
6_L	13_R	0.506	0.12
13_R	127_I	0.505	0.12
13_R	86_K	0.500	0.12

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3fjvA	2	0.9734	100	0.11	Contact Map
4a4zA	1	0.7819	8.1	0.968	Contact Map
2w4sA	2	0.1064	7.2	0.969	Contact Map
2a1vA	1	0.484	7	0.969	Contact Map
3ixqA	4	0.6968	5.9	0.97	Contact Map
2wvlA	2	0.4309	5.8	0.97	Contact Map
2fkiA	1	0.4468	5.3	0.97	Contact Map
3s6eA	1	0.5798	5	0.971	Contact Map
2lxiA	1	0.4415	5	0.971	Contact Map
4jifB	1	0.1011	4.9	0.971	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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