Q97VH6 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97VH6 - ABC transporter, ATP binding protein

UniProt:	Q97VH6	Sequences: MIKTIDISKTFKIKNKEIKAVDDVSFEIERNSTGALVGPNGAGKTTIIKMLSTLIIPSSGDALVNGYSITKEEKKVRESIGLVTVSERLFYYRLTALENLIFFASLQNLSLSDARKRAKEVLEIVGLSEWGNIPYMKFSTGMQRKLALARALITDPPVLLLDEPTLGLDPLSARMFRDLVRRIGRDKTILLTSHYMKDIEELAEKIILLKKGKAIAEGNKDNLKNYLGKVIEVEVNEYPLTLGKYVVQTSTNYYILRIPEKELDELKDYRVIKEEEPSLEDVYIYLIGDVEDSARLEAVRRGGWGGRWG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	309 (239)
Sequences:	83698 (50467)
Seq/√Len:	3264.4

ECOLI - METN PROV YADG FBPC MALK POTG POTA UGPC YCJV CYSA YDCT DPPF YEHX DPPD OPPD OPPF MACB DDPD SAPD RBSA ARAG MODC DDPF GSIA MLAF YHES TAUB YTFR FEPC UUP MDLB HISP SAPF NIKE CYDC YECC MDLA FECE FHUC PHNC LSRA CYDD MSBA GLNQ LPTB SSUB GLTL YOJI YPHE YHDZ PHNK LIVG PSTB ZNUC XYLG THIQ ARTP FTSE SUFC LIVF ALSA LOLD ETTA MODF BTUD MGLA NIKD YBBA FETA CCMA PHNL YDDA YNJD YEJF YBHF YBIT YHIH
BACSU - YVRA OPUBA OPUCA OPUAA METN YFIL YURJ MSMX YHCH TAGH YXLF YDBJ OPPD YHAQ YCBN YKFD DPPD APPD YVFR APPF OPPF YKPA YFMM RBSA YTRB YFMR ECFA1 YFMF YUSV TCYN FHUC YHEH YFIC ECSA YDIF YLMA YCLP YTLC NATA BCEA YGAD SKFE YKNV CYDD YWJA YFIB ECFA2 BMRA YKNU YVCR YXDL SUNT SUFC YHEI YXEO GLNQ TCYC CYDC ARTM FTSE MNTB YKOD PSTB1 ALBC SSUB YJKB YVRO PSTB2 YTHP YKNY ZNUC YCLH EXPZ YYBJ YHCG YUFO YYDI YTRE
HALSA - Q9HMX3 BTUDA Q9HMW0 Q9HHQ5 Q9HNZ9 Q9HMX2 Q9HR06 Q9HMT3 Q9HRJ6 Q9HMU8 Q9HRH8 Q9HMG1 PSTB2 Q9HSQ7 PHNC Q9HHM2 Q9HMG6 Q9HNY3 Y2317 Q9HRZ9 Y1631 Q9HRV7 PSTB1 Q9HR96 Q9HHR7 Q9HS04 Q9HQA8 Q9HT03 Q9HR21 Q9HMC1 Q9HMW1
SULSO - Q97VH6 Q7LX64 Q97UF2 Q97YY4 Q97UY8 Q97UH3 Q97VC1 Q97ZC0 Q97YP3 Q97VF5 Q97VK8 Q97VF4 Q97VK9 Q97YP7 Q97YQ7 Q97YK2 Q97YP8 Q97UJ9 Q97X18 Q97UD4 Q97U54 Q97Z03 Y1893 Q97UH4 Q980W0 Y2030 PSTB Q97W42 Q7LY07 Q97V01 Q97V00 Q7LXM4 Q97VY4 Q7LX80 Q97VM2 Q97Z56 Q97UG5 Q97Z96 Q97YP4 Q97UC2 Q97ZU0 Q980K5 Q980E6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
32_S	205_K	3.656	1.00
3_K	27_E	3.041	1.00
79_S	157_P	3.019	1.00
19_K	22_D	3.008	1.00
34_G	207_I	2.957	1.00
6_D	23_D	2.857	1.00
205_K	217_E	2.826	1.00
5_I	61_D	2.790	1.00
35_A	203_A	2.751	1.00
10_T	19_K	2.699	1.00
61_D	68_S	2.694	1.00
29_E	32_S	2.530	1.00
3_K	63_L	2.494	1.00
8_S	59_S	2.415	1.00
9_K	50_M	2.408	1.00
219_N	222_N	2.353	1.00
8_S	19_K	2.323	1.00
65_N	157_P	2.284	1.00
218_G	222_N	2.247	1.00
5_I	63_L	2.207	1.00
130_W	133_I	2.132	1.00
22_D	213_K	2.130	1.00
207_I	217_E	2.125	1.00
207_I	214_A	2.120	1.00
8_S	23_D	2.071	1.00
110_S	113_D	2.028	1.00
94_L	98_E	1.975	1.00
4_T	7_I	1.903	1.00
30_R	157_P	1.797	1.00
97_L	101_I	1.730	1.00
11_F	46_T	1.715	1.00
48_I	192_T	1.709	1.00
117_R	155_D	1.694	1.00
48_I	160_L	1.650	1.00
200_E	221_D	1.631	1.00
117_R	120_E	1.608	1.00
119_K	127_L	1.596	1.00
181_R	201_E	1.582	1.00
218_G	223_L	1.578	1.00
133_I	137_K	1.577	1.00
97_L	132_N	1.576	1.00
120_E	124_I	1.574	1.00
11_F	20_A	1.550	1.00
155_D	187_K	1.534	1.00
115_R	119_K	1.527	1.00
6_D	25_S	1.526	1.00
65_N	79_S	1.526	1.00
9_K	55_I	1.526	1.00
26_F	207_I	1.497	1.00
101_I	114_A	1.467	1.00
119_K	123_E	1.451	1.00
68_S	71_K	1.442	1.00
10_T	17_E	1.435	1.00
193_S	199_I	1.424	1.00
8_S	22_D	1.417	1.00
96_A	138_F	1.409	1.00
9_K	58_S	1.388	1.00
7_I	57_P	1.377	1.00
4_T	26_F	1.369	1.00
101_I	118_A	1.367	1.00
121_V	153_I	1.364	1.00
10_T	58_S	1.351	1.00
32_S	204_E	1.342	1.00
63_L	68_S	1.335	1.00
35_A	199_I	1.332	1.00
28_I	34_G	1.329	1.00
161_L	189_I	1.324	1.00
230_V	233_V	1.317	1.00
183_I	187_K	1.315	1.00
34_G	217_E	1.315	1.00
95_T	98_E	1.315	1.00
123_E	128_S	1.312	1.00
222_N	226_Y	1.304	1.00
24_V	47_I	1.300	1.00
26_F	47_I	1.293	1.00
210_K	215_I	1.270	1.00
229_K	232_E	1.268	1.00
4_T	51_L	1.261	1.00
215_I	229_K	1.260	1.00
33_T	184_G	1.260	1.00
34_G	205_K	1.246	1.00
128_S	131_G	1.236	1.00
29_E	205_K	1.234	1.00
53_T	56_I	1.200	1.00
52_S	82_L	1.167	1.00
100_L	122_L	1.158	1.00
97_L	115_R	1.156	1.00
230_V	234_E	1.149	1.00
112_S	116_K	1.149	1.00
101_I	115_R	1.149	1.00
5_I	27_E	1.139	1.00
30_R	65_N	1.135	1.00
184_G	189_I	1.135	1.00
33_T	189_I	1.125	1.00
105_S	114_A	1.123	1.00
33_T	203_A	1.114	1.00
110_S	114_A	1.108	1.00
113_D	116_K	1.101	1.00
116_K	120_E	1.095	1.00
95_T	132_N	1.095	1.00
216_A	226_Y	1.091	1.00
67_Y	72_E	1.086	1.00
231_I	235_V	1.083	1.00
227_L	231_I	1.080	1.00
50_M	57_P	1.075	1.00
36_L	47_I	1.072	1.00
111_L	115_R	1.071	1.00
177_R	198_D	1.066	1.00
98_E	101_I	1.065	1.00
109_L	113_D	1.065	1.00
120_E	123_E	1.056	1.00
131_G	138_F	1.039	1.00
5_I	25_S	1.034	1.00
21_V	50_M	1.030	1.00
119_K	131_G	1.024	1.00
221_D	225_N	1.024	1.00
174_R	178_D	1.022	1.00
99_N	150_R	1.021	1.00
49_K	55_I	1.011	1.00
97_L	118_A	1.008	1.00
206_I	220_K	1.000	1.00
36_L	190_L	0.998	1.00
100_L	153_I	0.986	1.00
181_R	184_G	0.980	1.00
4_T	47_I	0.978	1.00
222_N	225_N	0.977	1.00
51_L	190_L	0.972	1.00
138_F	146_L	0.970	1.00
122_L	131_G	0.967	1.00
216_A	227_L	0.965	1.00
179_L	182_R	0.952	1.00
33_T	191_L	0.950	1.00
173_A	195_Y	0.949	1.00
93_R	136_M	0.944	1.00
111_L	114_A	0.943	1.00
83_V	161_L	0.938	1.00
104_A	153_I	0.933	1.00
159_L	187_K	0.932	1.00
47_I	209_L	0.929	1.00
117_R	121_V	0.927	1.00
81_G	156_P	0.923	1.00
104_A	108_N	0.917	1.00
95_T	134_P	0.916	1.00
55_I	58_S	0.915	1.00
168_L	176_F	0.914	1.00
161_L	180_V	0.914	1.00
36_L	207_I	0.912	1.00
233_V	237_E	0.912	1.00
39_P	210_K	0.907	1.00
125_V	149_A	0.894	1.00
113_D	117_R	0.892	1.00
30_R	186_D	0.890	1.00
107_Q	154_T	0.890	1.00
173_A	198_D	0.887	1.00
126_G	175_M	0.884	1.00
83_V	148_L	0.881	1.00
33_T	181_R	0.881	1.00
118_A	121_V	0.880	1.00
2_I	158_V	0.879	1.00
180_V	189_I	0.875	1.00
85_V	140_T	0.874	1.00
114_A	118_A	0.869	1.00
6_D	59_S	0.869	1.00
121_V	149_A	0.868	1.00
96_A	146_L	0.865	1.00
81_G	151_A	0.863	1.00
101_I	105_S	0.861	1.00
109_L	114_A	0.856	1.00
94_L	102_F	0.855	1.00
9_K	46_T	0.848	1.00
68_S	72_E	0.846	1.00
210_K	234_E	0.845	1.00
49_K	54_L	0.844	1.00
124_I	182_R	0.843	1.00
184_G	204_E	0.842	1.00
159_L	189_I	0.840	1.00
88_R	143_Q	0.835	1.00
163_E	194_H	0.833	1.00
75_K	78_E	0.830	1.00
10_T	22_D	0.827	1.00
135_Y	146_L	0.826	1.00
4_T	62_A	0.824	1.00
52_S	160_L	0.824	1.00
97_L	119_K	0.823	1.00
67_Y	79_S	0.817	1.00
134_P	137_K	0.806	1.00
178_D	181_R	0.805	1.00
220_K	230_V	0.804	1.00
121_V	124_I	0.802	1.00
7_I	50_M	0.794	1.00
115_R	118_A	0.792	1.00
21_V	24_V	0.790	1.00
33_T	202_L	0.789	1.00
191_L	203_A	0.787	1.00
50_M	55_I	0.786	1.00
121_V	125_V	0.785	1.00
37_V	199_I	0.784	1.00
29_E	188_T	0.779	1.00
216_A	228_G	0.774	1.00
126_G	182_R	0.773	1.00
56_I	70_T	0.770	1.00
28_I	188_T	0.762	1.00
177_R	201_E	0.761	1.00
2_I	51_L	0.761	1.00
23_D	213_K	0.761	1.00
76_V	80_I	0.760	1.00
97_L	131_G	0.760	1.00
50_M	62_A	0.758	1.00
28_I	190_L	0.755	1.00
42_A	209_L	0.755	1.00
104_A	114_A	0.750	1.00
241_T	244_K	0.748	1.00
10_T	20_A	0.746	1.00
223_L	232_E	0.742	1.00
57_P	70_T	0.739	1.00
24_V	214_A	0.737	1.00
94_L	99_N	0.737	1.00
181_R	202_L	0.736	1.00
220_K	224_K	0.735	1.00
216_A	223_L	0.728	1.00
104_A	107_Q	0.728	1.00
83_V	151_A	0.722	1.00
61_D	70_T	0.721	1.00
232_E	236_N	0.720	1.00
214_A	217_E	0.716	1.00
23_D	59_S	0.715	1.00
63_L	66_G	0.707	1.00
116_K	119_K	0.705	1.00
21_V	47_I	0.704	1.00
158_V	188_T	0.702	1.00
119_K	129_E	0.700	1.00
208_L	223_L	0.700	1.00
234_E	237_E	0.694	1.00
28_I	158_V	0.694	1.00
6_D	9_K	0.691	1.00
210_K	213_K	0.690	1.00
95_T	99_N	0.689	1.00
123_E	129_E	0.688	1.00
165_T	176_F	0.687	1.00
160_L	190_L	0.686	1.00
138_F	142_M	0.685	1.00
20_A	46_T	0.682	1.00
103_F	150_R	0.681	1.00
157_P	187_K	0.680	1.00
72_E	75_K	0.677	1.00
34_G	190_L	0.675	1.00
203_A	206_I	0.673	1.00
37_V	208_L	0.672	1.00
198_D	202_L	0.671	1.00
100_L	118_A	0.669	1.00
75_K	79_S	0.669	1.00
99_N	135_Y	0.668	1.00
9_K	21_V	0.667	1.00
175_M	178_D	0.666	1.00
80_I	158_V	0.665	1.00
196_M	224_K	0.664	1.00
104_A	109_L	0.664	1.00
114_A	119_K	0.662	1.00
103_F	154_T	0.662	1.00
210_K	229_K	0.661	1.00
234_E	238_Y	0.656	1.00
181_R	185_R	0.654	1.00
103_F	106_L	0.649	1.00
110_S	119_K	0.648	1.00
200_E	224_K	0.647	1.00
178_D	182_R	0.644	1.00
105_S	111_L	0.643	1.00
121_V	152_L	0.636	1.00
87_E	147_A	0.635	1.00
10_T	59_S	0.634	1.00
113_D	122_L	0.632	1.00
222_N	228_G	0.631	1.00
115_R	132_N	0.628	1.00
200_E	220_K	0.627	1.00
37_V	196_M	0.627	1.00
127_L	131_G	0.623	1.00
140_T	145_K	0.621	1.00
113_D	127_L	0.621	1.00
178_D	201_E	0.619	1.00
19_K	23_D	0.617	1.00
81_G	154_T	0.616	1.00
165_T	198_D	0.613	1.00
109_L	117_R	0.613	1.00
64_V	79_S	0.611	1.00
126_G	129_E	0.608	1.00
50_M	58_S	0.604	1.00
224_K	227_L	0.603	1.00
229_K	233_V	0.602	1.00
191_L	202_L	0.602	1.00
27_E	217_E	0.600	1.00
203_A	220_K	0.598	1.00
89_L	143_Q	0.597	1.00
67_Y	75_K	0.597	1.00
230_V	235_V	0.594	1.00
52_S	80_I	0.593	1.00
122_L	127_L	0.590	1.00
172_S	175_M	0.586	1.00
53_T	70_T	0.585	1.00
51_L	62_A	0.582	1.00
238_Y	241_T	0.577	1.00
53_T	57_P	0.576	1.00
180_V	191_L	0.575	1.00
45_T	49_K	0.574	1.00
15_N	18_I	0.574	1.00
193_S	198_D	0.572	1.00
64_V	158_V	0.569	1.00
64_V	76_V	0.568	1.00
231_I	234_E	0.567	1.00
61_D	71_K	0.566	1.00
2_I	64_V	0.564	1.00
33_T	204_E	0.564	1.00
10_T	18_I	0.562	1.00
72_E	76_V	0.562	1.00
102_F	106_L	0.561	1.00
49_K	82_L	0.560	1.00
139_S	142_M	0.557	1.00
199_I	203_A	0.556	1.00
90_F	143_Q	0.554	1.00
32_S	217_E	0.554	1.00
19_K	59_S	0.552	1.00
120_E	155_D	0.551	1.00
31_N	188_T	0.551	1.00
232_E	235_V	0.549	1.00
69_I	76_V	0.547	1.00
103_F	107_Q	0.546	1.00
205_K	219_N	0.545	1.00
152_L	187_K	0.545	1.00
97_L	100_L	0.543	1.00
11_F	55_I	0.542	1.00
18_I	211_K	0.539	1.00
227_L	230_V	0.537	1.00
184_G	187_K	0.536	1.00
40_N	163_E	0.534	1.00
86_S	89_L	0.532	1.00
158_V	190_L	0.531	1.00
116_K	123_E	0.529	1.00
40_N	172_S	0.529	1.00
92_Y	143_Q	0.528	1.00
83_V	147_A	0.527	1.00
238_Y	242_L	0.525	1.00
208_L	227_L	0.523	1.00
10_T	16_K	0.519	1.00
218_G	224_K	0.519	1.00
65_N	158_V	0.517	1.00
74_K	77_R	0.516	1.00
226_Y	229_K	0.515	1.00
3_K	66_G	0.513	1.00
97_L	128_S	0.512	1.00
84_T	87_E	0.509	1.00
112_S	115_R	0.508	1.00
22_D	211_K	0.505	1.00
199_I	206_I	0.505	1.00
227_L	232_E	0.504	1.00
100_L	113_D	0.504	1.00
54_L	84_T	0.504	1.00
96_A	100_L	0.503	1.00
199_I	220_K	0.500	1.00
195_Y	198_D	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4yerA	2	0.8803	100	0.178	Contact Map
3tuiC	2	0.9935	100	0.198	Contact Map
1vplA	2	0.7605	100	0.214	Contact Map
4rvcA	4	0.7702	100	0.215	Contact Map
4u00A	1	0.7638	100	0.217	Contact Map
2yyzA	1	0.9644	100	0.218	Contact Map
4ymuJ	2	0.7605	100	0.219	Contact Map
4mkiB	2	0.8835	100	0.22	Contact Map
1v43A	2	0.8576	100	0.22	Contact Map
1z47A	2	0.9838	100	0.221	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0106 seconds.