Q97VF5 - SULSO - GREMLIN Contacts

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Q97VF5 - ABC transporter, ATP binding protein

UniProt:	Q97VF5	Sequences: MLSHNSLRYSKNLPCTININSLHTLLFSREEKSISNGYEYKCVMILEVHNLNVIYDEGNSRIIKAVNDVSFGVEKGEILGIIGESGSGKTTLISAILRAIRPPGKIISGKVIFNGMDIFSMTIDEFRKLLWKDISYVPQASQNALNPVLPISEIFYHEAISHGEADKKRVIERASELLKLVGLDPARVLKMYPFQLSGGMKQRVMIALSLLLNPKLILMDEPTSALDMLNQELLLKLIKNINQEMGVTIVYVTHDILNIAQIANRLLVMYKGYVMEEGKTEEIIKSPLNPYTSLLVSSIPSLKGEVKVINVPLDEPLVSKEKGCPFLARCSKAFGRCKEELPEIRLVYDRKVRCHLYGSNGA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	362 (278)
Sequences:	38115 (24042)
Seq/√Len:	1441.9

ECOLI - PROV POTA POTG CYSA FBPC MALK OPPF YCJV DPPF DPPD METN YHES SAPD OPPD YDCT UGPC DDPD YEHX GSIA DDPF MODC ARAG UUP MDLA CYDD MDLB RBSA CYDC YADG MSBA MACB YOJI FEPC SAPF MLAF ETTA YTFR FHUC NIKE TAUB HISP FECE LSRA YECC SSUB GLNQ YHDZ PHNC YPHE LPTB PHNK GLTL SUFC PSTB LIVG XYLG ARTP LIVF ALSA THIQ MGLA MODF LOLD ZNUC FTSE BTUD FETA NIKD YDDA YBBA YEJF PHNL CCMA YNJD YBHF YBIT YHIH
BACSU - OPUAA OPUCA YVRA OPUBA MSMX OPPD YURJ APPF APPD DPPD YHEH YKFD METN SUNT TAGH YFIC YFIL YDIF YKPA YHCH YGAD BMRA YKNV YKNU YFIB YHEI YWJA OPPF YXLF YVFR YCBN YDBJ YFMR YHAQ RBSA CYDC CYDD YFMM YUSV ECFA1 YTRB YFMF FHUC TCYN YCLP YLMA YKOD SUFC BCEA YXDL ECFA2 YVCR EXPZ YTLC YXEO PSTB2 PSTB1 ARTM ECSA GLNQ YJKB SKFE TCYC FTSE NATA SSUB ALBC YVRO MNTB YKNY YTHP YCLH YHCG YUFO ZNUC YYBJ YYDI YTRE
HALSA - Q9HMX3 Q9HMW0 BTUDA Q9HHQ5 Q9HNZ9 Q9HR06 Q9HMX2 Q9HMT3 Q9HSQ7 Q9HMG1 Q9HRJ6 PSTB2 Q9HMU8 Q9HRH8 Q9HMG6 PHNC Q9HHM2 PSTB1 Q9HNY3 Q9HRV7 Q9HRZ9 Y1631 Y2317 Q9HHR7 Q9HR96 Q9HS04 Q9HT03 Q9HQA8 Q9HR21 Q9HMC1 Q9HMW1
SULSO - Q97VF5 Q97UJ9 Q97VK8 Q97UF2 Q97VK9 Q97UH3 Q97YP3 Q97YY4 Q97UY8 Q97YP7 Q97ZC0 Q97VC1 Q97VF4 Q97YP8 Q7LX64 Q97VH6 Q97X18 Q97YK2 Q97UD4 Q97YQ7 Q97U54 Y1893 Q97UH4 Q97Z03 Y2030 Q980W0 PSTB Q97W42 Q7LXM4 Q97V01 Q7LY07 Q97V00 Q97VM2 Q97VY4 Q7LX80 Q97UG5 Q97Z56 Q97YP4 Q97Z96 Q97UC2 Q97ZU0 Q980K5 Q980E6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
77_E	265_R	4.142	1.00
47_E	72_G	3.450	1.00
133_D	215_K	3.289	1.00
49_H	110_K	3.288	1.00
265_R	277_E	3.148	1.00
50_N	68_D	3.121	1.00
74_E	77_E	2.965	1.00
110_K	117_D	2.863	1.00
175_S	185_P	2.648	1.00
279_K	282_E	2.636	1.00
53_V	95_A	2.525	1.00
64_K	67_N	2.520	1.00
149_L	153_E	2.515	1.00
52_N	108_S	2.501	1.00
79_L	267_L	2.445	1.00
49_H	112_I	2.398	1.00
267_L	274_V	2.354	1.00
114_N	215_K	2.333	1.00
47_E	112_I	2.265	1.00
122_T	125_E	2.228	1.00
80_G	263_A	2.227	1.00
52_N	68_D	2.207	1.00
48_V	51_L	2.189	1.00
54_I	64_K	2.150	1.00
67_N	273_Y	2.038	1.00
278_G	283_I	2.035	1.00
177_L	211_L	2.015	1.00
267_L	277_E	2.009	1.00
180_L	245_M	1.995	1.00
166_D	169_R	1.963	1.00
45_I	72_G	1.946	1.00
93_I	218_L	1.915	1.00
93_I	252_V	1.905	1.00
75_K	215_K	1.896	1.00
117_D	120_S	1.884	1.00
173_R	176_E	1.876	1.00
287_P	292_T	1.798	1.00
278_G	282_E	1.791	1.00
188_V	191_M	1.735	1.00
55_Y	91_T	1.723	1.00
175_S	179_K	1.720	1.00
98_R	126_F	1.711	1.00
260_A	281_E	1.680	1.00
52_N	64_K	1.662	1.00
152_S	156_Y	1.620	1.00
54_I	103_P	1.614	1.00
80_G	259_I	1.595	1.00
48_V	71_F	1.590	1.00
116_M	125_E	1.574	1.00
292_T	296_V	1.573	1.00
175_S	189_L	1.571	1.00
280_T	291_Y	1.535	1.00
44_M	47_E	1.533	1.00
44_M	74_E	1.530	1.00
71_F	267_L	1.529	1.00
114_N	133_D	1.527	1.00
239_K	261_Q	1.514	1.00
73_V	79_L	1.506	1.00
173_R	213_N	1.490	1.00
50_N	70_S	1.486	1.00
54_I	62_I	1.454	1.00
324_C	330_C	1.437	1.00
191_M	195_Q	1.433	1.00
253_T	259_I	1.427	1.00
176_E	180_L	1.415	1.00
135_S	214_P	1.414	1.00
170_V	175_S	1.412	1.00
322_K	327_L	1.406	1.00
78_I	263_A	1.386	1.00
52_N	67_N	1.373	1.00
71_F	92_L	1.368	1.00
213_N	247_V	1.366	1.00
56_D	62_I	1.353	1.00
53_V	100_I	1.338	1.00
45_I	74_E	1.324	1.00
98_R	101_R	1.317	1.00
150_P	153_E	1.310	1.00
43_V	75_K	1.304	1.00
116_M	121_M	1.298	1.00
51_L	102_P	1.295	1.00
166_D	170_V	1.273	1.00
97_L	136_Y	1.272	1.00
81_I	267_L	1.266	1.00
160_I	170_V	1.262	1.00
152_S	189_L	1.259	1.00
235_L	258_N	1.258	1.00
78_I	242_N	1.254	1.00
79_L	265_R	1.252	1.00
53_V	103_P	1.252	1.00
69_V	92_L	1.242	1.00
55_Y	65_A	1.235	1.00
45_I	75_K	1.227	1.00
77_E	264_N	1.216	1.00
48_V	96_I	1.211	1.00
100_I	103_P	1.210	1.00
242_N	249_I	1.204	1.00
153_E	156_Y	1.195	1.00
121_M	126_F	1.194	1.00
282_E	286_S	1.190	1.00
121_M	125_E	1.190	1.00
152_S	186_A	1.178	1.00
75_K	114_N	1.175	1.00
171_I	189_L	1.154	1.00
44_M	72_G	1.145	1.00
78_I	249_I	1.136	1.00
137_V	219_M	1.135	1.00
171_I	175_S	1.134	1.00
167_K	171_I	1.127	1.00
81_I	250_V	1.125	1.00
176_E	179_K	1.113	1.00
179_K	185_P	1.110	1.00
73_V	250_V	1.104	1.00
49_H	70_S	1.101	1.00
239_K	242_N	1.100	1.00
168_K	172_E	1.098	1.00
188_V	196_L	1.097	1.00
273_Y	325_P	1.097	1.00
152_S	190_K	1.087	1.00
92_L	269_M	1.086	1.00
74_E	265_R	1.086	1.00
125_E	128_K	1.079	1.00
78_I	251_Y	1.076	1.00
156_Y	170_V	1.072	1.00
196_L	204_V	1.071	1.00
155_F	178_L	1.070	1.00
155_F	211_L	1.069	1.00
159_A	164_E	1.068	1.00
150_P	190_K	1.064	1.00
159_A	162_H	1.061	1.00
156_Y	174_A	1.059	1.00
49_H	72_G	1.056	1.00
281_E	285_K	1.053	1.00
112_I	117_D	1.048	1.00
81_I	92_L	1.046	1.00
167_K	170_V	1.044	1.00
154_I	208_L	1.038	1.00
219_M	249_I	1.038	1.00
226_L	234_L	1.037	1.00
169_R	185_P	1.037	1.00
159_A	211_L	1.034	1.00
266_L	280_T	1.033	1.00
276_E	286_S	1.030	1.00
290_P	293_S	1.029	1.00
97_L	218_L	1.028	1.00
67_N	325_P	1.028	1.00
323_G	327_L	1.024	1.00
238_I	249_I	1.020	1.00
217_I	249_I	1.017	1.00
198_G	203_R	1.010	1.00
270_Y	290_P	1.009	1.00
323_G	326_F	1.008	1.00
166_D	175_S	1.006	1.00
172_E	176_E	0.994	1.00
213_N	245_M	0.993	1.00
45_I	114_N	0.989	1.00
231_Q	255_D	0.988	1.00
50_N	108_S	0.982	1.00
232_E	236_K	0.981	1.00
44_M	75_K	0.980	1.00
275_M	290_P	0.975	1.00
149_L	157_H	0.975	1.00
101_R	119_F	0.972	1.00
156_Y	160_I	0.970	1.00
79_L	277_E	0.964	1.00
270_Y	275_M	0.960	1.00
321_E	328_A	0.959	1.00
326_F	330_C	0.959	1.00
165_A	170_V	0.957	1.00
54_I	67_N	0.955	1.00
293_S	297_S	0.948	1.00
217_I	247_V	0.948	1.00
155_F	169_R	0.944	1.00
251_Y	262_I	0.939	1.00
44_M	114_N	0.933	1.00
82_I	259_I	0.924	1.00
276_E	289_N	0.918	1.00
68_D	273_Y	0.917	1.00
184_D	188_V	0.916	1.00
276_E	287_P	0.912	1.00
48_V	111_V	0.911	1.00
145_L	201_K	0.910	1.00
320_K	325_P	0.905	1.00
163_G	166_D	0.900	1.00
174_A	177_L	0.897	1.00
301_S	304_G	0.893	1.00
251_Y	263_A	0.890	1.00
53_V	91_T	0.889	1.00
134_I	216_L	0.887	1.00
87_S	269_M	0.887	1.00
95_A	102_P	0.881	1.00
183_L	188_V	0.881	1.00
145_L	204_V	0.873	1.00
74_E	248_T	0.870	1.00
169_R	172_E	0.865	1.00
73_V	248_T	0.863	1.00
321_E	327_L	0.863	1.00
73_V	216_L	0.857	1.00
282_E	285_K	0.853	1.00
327_L	330_C	0.850	1.00
57_E	62_I	0.850	1.00
135_S	209_S	0.850	1.00
97_L	134_I	0.849	1.00
66_V	69_V	0.844	1.00
324_C	327_L	0.843	1.00
46_L	250_V	0.839	1.00
152_S	171_I	0.836	1.00
78_I	239_K	0.828	1.00
319_S	322_K	0.828	1.00
124_D	128_K	0.825	1.00
179_K	184_D	0.824	1.00
95_A	111_V	0.820	1.00
75_K	246_G	0.816	1.00
163_G	173_R	0.816	1.00
51_L	95_A	0.810	1.00
253_T	258_N	0.809	1.00
283_I	292_T	0.808	1.00
320_K	323_G	0.803	1.00
178_L	189_L	0.803	1.00
171_I	190_K	0.801	1.00
323_G	330_C	0.801	1.00
95_A	100_I	0.797	1.00
291_Y	294_L	0.795	1.00
241_I	247_V	0.792	1.00
146_N	149_L	0.789	1.00
82_I	268_V	0.786	1.00
103_P	108_S	0.783	1.00
123_I	126_F	0.778	1.00
137_V	206_I	0.776	1.00
170_V	174_A	0.775	1.00
152_S	165_A	0.775	1.00
324_C	329_R	0.772	1.00
177_L	180_L	0.772	1.00
313_L	316_P	0.771	1.00
219_M	238_I	0.764	1.00
321_E	324_C	0.764	1.00
221_E	254_H	0.758	1.00
163_G	167_K	0.755	1.00
110_K	120_S	0.754	1.00
84_E	270_Y	0.747	1.00
69_V	274_V	0.741	1.00
158_E	208_L	0.736	1.00
169_R	178_L	0.733	1.00
322_K	326_F	0.733	1.00
113_F	133_D	0.731	1.00
319_S	323_G	0.728	1.00
57_E	63_I	0.727	1.00
297_S	309_I	0.726	1.00
116_M	133_D	0.725	1.00
231_Q	258_N	0.725	1.00
158_E	212_L	0.719	1.00
320_K	324_C	0.719	1.00
280_T	284_I	0.716	1.00
156_Y	171_I	0.715	1.00
156_Y	165_A	0.714	1.00
239_K	262_I	0.713	1.00
151_I	204_V	0.710	1.00
177_L	181_V	0.706	1.00
45_I	113_F	0.704	1.00
46_L	113_F	0.700	1.00
79_L	250_V	0.698	1.00
286_S	289_N	0.698	1.00
46_L	96_I	0.692	1.00
289_N	292_T	0.691	1.00
275_M	325_P	0.690	1.00
173_R	177_L	0.689	1.00
57_E	318_V	0.687	1.00
66_V	95_A	0.686	1.00
94_S	100_I	0.685	1.00
294_L	311_V	0.682	1.00
55_Y	100_I	0.682	1.00
284_I	295_L	0.680	1.00
216_L	250_V	0.680	1.00
36_N	39_E	0.679	1.00
165_A	169_R	0.679	1.00
174_A	189_L	0.678	1.00
325_P	328_A	0.678	1.00
313_L	317_L	0.676	1.00
113_F	216_L	0.675	1.00
96_I	250_V	0.674	1.00
190_K	195_Q	0.665	1.00
85_S	230_N	0.663	1.00
123_I	127_R	0.661	1.00
80_G	253_T	0.660	1.00
156_Y	189_L	0.657	1.00
43_V	74_E	0.657	1.00
85_S	226_L	0.654	1.00
308_V	311_V	0.652	1.00
58_G	62_I	0.650	1.00
98_R	123_I	0.649	1.00
53_V	66_V	0.649	1.00
303_K	306_V	0.649	1.00
110_K	119_F	0.648	1.00
85_S	221_E	0.648	1.00
242_N	264_N	0.648	1.00
274_V	277_E	0.645	1.00
149_L	154_I	0.643	1.00
163_G	170_V	0.643	1.00
223_T	258_N	0.642	1.00
111_V	119_F	0.642	1.00
158_E	161_S	0.636	1.00
319_S	327_L	0.635	1.00
259_I	263_A	0.633	1.00
196_L	200_M	0.632	1.00
78_I	262_I	0.631	1.00
43_V	114_N	0.631	1.00
218_L	250_V	0.631	1.00
117_D	121_M	0.630	1.00
236_K	240_N	0.628	1.00
150_P	154_I	0.624	1.00
162_H	212_L	0.622	1.00
162_H	211_L	0.621	1.00
50_N	53_V	0.620	1.00
284_I	287_P	0.614	1.00
210_L	247_V	0.612	1.00
124_D	127_R	0.612	1.00
96_I	111_V	0.611	1.00
39_E	42_C	0.610	1.00
263_A	280_T	0.606	1.00
123_I	128_K	0.606	1.00
325_P	329_R	0.601	1.00
58_G	63_I	0.598	1.00
278_G	284_I	0.596	1.00
65_A	91_T	0.595	1.00
87_S	315_E	0.594	1.00
197_S	200_M	0.592	1.00
312_P	315_E	0.591	1.00
56_D	63_I	0.591	1.00
270_Y	273_Y	0.590	1.00
177_L	207_A	0.589	1.00
320_K	327_L	0.589	1.00
102_P	118_I	0.588	1.00
183_L	200_M	0.587	1.00
293_S	296_V	0.587	1.00
182_G	240_N	0.586	1.00
203_R	226_L	0.585	1.00
48_V	92_L	0.583	1.00
322_K	328_A	0.583	1.00
166_D	179_K	0.583	1.00
294_L	297_S	0.582	1.00
240_N	245_M	0.581	1.00
185_P	188_V	0.579	1.00
318_V	322_K	0.575	1.00
206_I	234_L	0.572	1.00
77_E	277_E	0.568	1.00
79_L	274_V	0.567	1.00
84_E	87_S	0.566	1.00
155_F	204_V	0.565	1.00
233_L	236_K	0.564	1.00
256_I	284_I	0.563	1.00
320_K	326_F	0.562	1.00
179_K	186_A	0.561	1.00
128_K	133_D	0.561	1.00
323_G	328_A	0.561	1.00
182_G	233_L	0.560	1.00
237_L	240_N	0.560	1.00
95_A	103_P	0.559	1.00
159_A	165_A	0.557	1.00
54_I	108_S	0.557	1.00
85_S	203_R	0.555	1.00
269_M	274_V	0.555	1.00
311_V	315_E	0.553	1.00
94_S	97_L	0.552	1.00
155_F	174_A	0.549	1.00
64_K	103_P	0.546	1.00
169_R	173_R	0.546	1.00
125_E	133_D	0.545	1.00
94_S	99_A	0.545	1.00
172_E	179_K	0.544	1.00
288_L	293_S	0.544	1.00
189_L	193_P	0.543	1.00
171_I	174_A	0.542	1.00
84_E	290_P	0.541	1.00
318_V	323_G	0.540	1.00
155_F	158_E	0.539	1.00
322_K	330_C	0.539	1.00
317_L	320_K	0.539	1.00
190_K	193_P	0.539	1.00
169_R	175_S	0.538	1.00
68_D	108_S	0.536	1.00
180_L	240_N	0.536	1.00
164_E	167_K	0.535	1.00
144_A	205_M	0.535	1.00
276_E	292_T	0.534	1.00
75_K	248_T	0.533	1.00
324_C	328_A	0.532	1.00
173_R	233_L	0.531	1.00
141_S	205_M	0.528	1.00
54_I	65_A	0.528	1.00
294_L	298_S	0.528	1.00
319_S	324_C	0.527	1.00
45_I	216_L	0.525	1.00
316_P	321_E	0.523	1.00
118_I	121_M	0.522	1.00
289_N	294_L	0.521	1.00
311_V	314_D	0.521	1.00
286_S	290_P	0.518	1.00
94_S	136_Y	0.518	1.00
98_R	119_F	0.517	1.00
155_F	208_L	0.517	1.00
188_V	200_M	0.516	1.00
287_P	296_V	0.514	1.00
326_F	329_R	0.514	1.00
178_L	185_P	0.513	1.00
160_I	167_K	0.513	1.00
235_L	253_T	0.511	1.00
156_Y	159_A	0.509	1.00
72_G	277_E	0.509	1.00
321_E	325_P	0.508	1.00
315_E	328_A	0.507	1.00
314_D	317_L	0.505	1.00
82_I	256_I	0.505	1.00
257_L	261_Q	0.504	1.00
159_A	212_L	0.502	1.00
316_P	319_S	0.502	1.00
268_V	283_I	0.501	1.00
290_P	294_L	0.500	1.00
118_I	134_I	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4ry2A	2	0.7459	100	0.214	Contact Map
4f4cA	1	0.7459	100	0.227	Contact Map
4q9hA	1	0.7845	100	0.242	Contact Map
4a82A	2	0.7762	100	0.244	Contact Map
3zdqA	2	0.7486	100	0.248	Contact Map
4mrsA	2	0.7983	100	0.249	Contact Map
3b5xA	2	0.7707	100	0.251	Contact Map
3b60A	2	0.7707	100	0.253	Contact Map
3tuiC	2	0.8536	100	0.255	Contact Map
4q4hB	1	0.7707	100	0.256	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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