Q97VF4 - SULSO - GREMLIN Contacts

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Q97VF4 - ABC transporter, ATP binding protein

UniProt:	Q97VF4	Sequences: MGLMELKGVSVIFEDKVGLFKKRKFYALKDVSLSMNQGDLLIVLGESGAGKTTLGRVIVGLQKPTSGEVVYDGYNIWKNKRKIFKKYRKDVQLIPQDPYSTLPFNKTVEEILVAPILRWEKINKDELRKRLINLLELVKLTPAEEFLGKYPHQLSGGQKQRLSIARSLSVNPRIIVADEPVTMVDASLRIGILNTLAEIKNRLNLTMVFITHDIPIARYFYHLFDKGNTIVMFAGRIVERADLEEILKDPLHPYTNDLIKLTPSIDNLYKEINVKINYERVEKGCPYRLRCPFAMDICKNEEPKLFKYSHEVACFLYGKVGESE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	324 (254)
Sequences:	57989 (35939)
Seq/√Len:	2255.0

ECOLI - CYSA FBPC PROV METN MALK YCJV POTG OPPD OPPF DDPD DPPF POTA DPPD UGPC SAPD YDCT MODC DDPF YEHX YADG GSIA ARAG NIKE RBSA YHES UUP MACB FEPC SAPF MLAF MDLA CYDC MSBA HISP MDLB CYDD TAUB YECC FECE YOJI YTFR GLNQ FHUC LSRA PHNK PHNC SSUB LPTB GLTL YHDZ ARTP YPHE SUFC ETTA BTUD LIVG ZNUC LOLD PSTB FTSE ALSA XYLG THIQ YEJF MODF LIVF NIKD MGLA FETA YBBA PHNL YDDA CCMA YNJD YBHF YBIT YHIH
BACSU - OPUCA OPUBA YVRA OPUAA MSMX OPPD APPF YKFD APPD DPPD YURJ METN YKPA YFMM TAGH OPPF YFIL YHCH YVFR YDBJ YXLF YHAQ YCBN ECFA1 RBSA YHEH YUSV SUNT YDIF YFIB YFMF FHUC YFIC YGAD YTRB BMRA YHEI YKNU YFMR TCYN YWJA YKNV ECFA2 CYDD YCLP YLMA BCEA YTLC YKOD SUFC YVCR YXDL CYDC ECSA SSUB YXEO NATA SKFE ARTM GLNQ TCYC FTSE MNTB YVRO YJKB YKNY PSTB1 ALBC YTHP PSTB2 YTRE YHCG YCLH EXPZ ZNUC YUFO YYBJ YYDI
HALSA - Q9HMX3 Q9HMW0 BTUDA Q9HHQ5 Q9HMX2 Q9HNZ9 Q9HMT3 Q9HR06 Q9HMG1 Q9HRJ6 Q9HMU8 Q9HSQ7 Q9HRH8 PHNC PSTB2 Q9HHM2 Q9HMG6 Q9HNY3 Q9HRV7 Q9HRZ9 Y1631 Y2317 Q9HR96 PSTB1 Q9HHR7 Q9HS04 Q9HT03 Q9HR21 Q9HQA8 Q9HMC1 Q9HMW1
SULSO - Q97VF4 Q97UF2 Q97VF5 Q97UY8 Q97UH3 Q97YY4 Q97VK8 Q97ZC0 Q97YP7 Q97YP3 Q97VK9 Q97VC1 Q97VH6 Q7LX64 Q97UJ9 Q97YP8 Q97UD4 Q97YK2 Q97X18 Q97YQ7 Q97Z03 Y2030 Y1893 Q980W0 Q97U54 Q97UH4 Q7LY07 PSTB Q97W42 Q97VY4 Q97V01 Q7LXM4 Q97V00 Q97UG5 Q7LX80 Q97VM2 Q97Z56 Q97YP4 Q97Z96 Q97UC2 Q97ZU0 Q980E6 Q980K5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
39_D	228_N	4.447	1.00
90_D	173_R	3.571	1.00
26_Y	29_K	3.309	1.00
41_L	230_I	3.056	1.00
228_N	240_R	2.932	1.00
36_N	39_D	2.914	1.00
68_E	75_N	2.907	1.00
242_D	245_E	2.854	1.00
42_I	224_F	2.816	1.00
72_D	173_R	2.752	1.00
146_F	149_K	2.669	1.00
230_I	237_I	2.556	1.00
29_K	236_R	2.483	1.00
123_N	126_E	2.393	1.00
106_K	110_E	2.272	1.00
37_Q	173_R	2.206	1.00
218_R	244_E	2.128	1.00
55_G	210_I	2.063	1.00
15_D	30_D	2.046	1.00
132_I	142_P	2.032	1.00
132_I	147_L	2.025	1.00
130_R	171_N	1.988	1.00
130_R	133_N	1.984	1.00
230_I	240_R	1.975	1.00
241_A	246_I	1.969	1.00
75_N	78_K	1.960	1.00
134_L	169_S	1.955	1.00
241_A	245_E	1.946	1.00
55_G	176_V	1.915	1.00
133_N	137_L	1.825	1.00
17_V	30_D	1.820	1.00
197_A	219_Y	1.781	1.00
149_K	153_Q	1.732	1.00
42_I	217_A	1.716	1.00
109_E	148_G	1.702	1.00
211_T	217_A	1.692	1.00
72_D	90_D	1.674	1.00
60_G	84_F	1.656	1.00
199_I	205_L	1.633	1.00
109_E	147_L	1.601	1.00
109_E	113_V	1.600	1.00
128_R	132_I	1.599	1.00
245_E	249_D	1.588	1.00
84_F	88_R	1.566	1.00
113_V	127_L	1.562	1.00
33_L	230_I	1.554	1.00
113_V	131_L	1.532	1.00
197_A	200_K	1.532	1.00
107_T	110_E	1.514	1.00
142_P	145_E	1.503	1.00
40_L	200_K	1.485	1.00
33_L	54_L	1.482	1.00
146_F	154_L	1.454	1.00
177_A	207_M	1.453	1.00
141_T	145_E	1.452	1.00
35_M	41_L	1.405	1.00
15_D	18_G	1.401	1.00
18_G	22_K	1.375	1.00
112_L	135_L	1.369	1.00
12_I	34_S	1.360	1.00
39_D	225_D	1.357	1.00
117_L	127_L	1.355	1.00
171_N	205_L	1.347	1.00
253_P	256_N	1.338	1.00
70_V	75_N	1.328	1.00
145_E	149_K	1.326	1.00
256_N	260_K	1.311	1.00
132_I	136_E	1.302	1.00
41_L	228_N	1.301	1.00
41_L	240_R	1.297	1.00
60_G	63_K	1.296	1.00
74_Y	79_N	1.293	1.00
128_R	147_L	1.292	1.00
12_I	26_Y	1.289	1.00
125_D	129_K	1.275	1.00
107_T	148_G	1.272	1.00
200_K	207_M	1.270	1.00
244_E	248_K	1.268	1.00
14_E	68_E	1.260	1.00
36_N	228_N	1.260	1.00
31_V	54_L	1.257	1.00
59_V	93_L	1.257	1.00
40_L	207_M	1.247	1.00
193_L	216_I	1.246	1.00
129_K	133_N	1.235	1.00
110_E	113_V	1.234	1.00
14_E	70_V	1.234	1.00
94_I	177_A	1.234	1.00
118_R	121_K	1.226	1.00
253_P	257_D	1.223	1.00
273_N	276_I	1.223	1.00
135_L	147_L	1.213	1.00
99_Y	159_K	1.210	1.00
37_Q	72_D	1.204	1.00
126_E	129_K	1.184	1.00
15_D	20_F	1.170	1.00
123_N	127_L	1.160	1.00
154_L	162_L	1.154	1.00
133_N	136_E	1.148	1.00
136_E	141_T	1.148	1.00
109_E	128_R	1.147	1.00
105_N	152_H	1.147	1.00
40_L	224_F	1.142	1.00
196_L	207_M	1.129	1.00
255_T	259_I	1.121	1.00
43_V	208_V	1.117	1.00
57_V	64_P	1.114	1.00
111_I	166_R	1.109	1.00
37_Q	204_N	1.105	1.00
124_K	127_L	1.103	1.00
233_F	238_V	1.096	1.00
15_D	23_R	1.080	1.00
79_N	84_F	1.077	1.00
141_T	146_F	1.064	1.00
122_I	127_L	1.060	1.00
229_T	243_L	1.059	1.00
106_K	114_A	1.057	1.00
175_I	205_L	1.039	1.00
12_I	24_K	1.036	1.00
245_E	248_K	1.032	1.00
136_E	142_P	1.029	1.00
200_K	225_D	1.028	1.00
57_V	62_Q	1.023	1.00
28_L	57_V	1.021	1.00
43_V	54_L	1.015	1.00
58_I	208_V	1.010	1.00
175_I	207_M	1.008	1.00
106_K	111_I	1.008	1.00
109_E	131_L	1.005	1.00
184_V	192_I	1.005	1.00
237_I	240_R	1.002	1.00
36_N	206_T	0.990	1.00
92_Q	172_P	0.989	1.00
19_L	26_Y	0.986	1.00
13_F	53_T	0.983	1.00
179_E	212_H	0.976	1.00
21_K	24_K	0.973	1.00
252_H	255_T	0.973	1.00
127_L	131_L	0.973	1.00
116_I	169_S	0.971	1.00
243_L	254_Y	0.969	1.00
139_K	198_E	0.968	1.00
126_E	130_R	0.966	1.00
54_L	232_M	0.965	1.00
92_Q	167_S	0.963	1.00
275_K	278_Y	0.954	1.00
87_Y	91_V	0.952	1.00
15_D	22_K	0.949	1.00
246_I	255_T	0.948	1.00
112_L	169_S	0.947	1.00
190_I	194_N	0.931	1.00
12_I	15_D	0.926	1.00
113_V	117_L	0.919	1.00
40_L	197_A	0.917	1.00
27_A	53_T	0.916	1.00
142_P	147_L	0.915	1.00
134_L	165_A	0.911	1.00
137_L	198_E	0.911	1.00
43_V	230_I	0.911	1.00
14_E	24_K	0.910	1.00
243_L	247_L	0.909	1.00
177_A	196_L	0.908	1.00
56_R	61_L	0.905	1.00
56_R	62_Q	0.904	1.00
134_L	137_L	0.903	1.00
189_R	213_D	0.898	1.00
264_S	267_N	0.896	1.00
28_L	31_V	0.892	1.00
94_I	164_I	0.892	1.00
113_V	128_R	0.886	1.00
35_M	174_I	0.885	1.00
209_F	223_L	0.878	1.00
130_R	134_L	0.878	1.00
49_A	232_M	0.877	1.00
150_Y	153_Q	0.872	1.00
59_V	176_V	0.871	1.00
195_T	198_E	0.868	1.00
124_K	128_R	0.866	1.00
209_F	224_F	0.860	1.00
197_A	223_L	0.859	1.00
103_P	106_K	0.858	1.00
189_R	216_I	0.857	1.00
12_I	29_K	0.852	1.00
122_I	126_E	0.852	1.00
44_L	217_A	0.843	1.00
91_V	174_I	0.837	1.00
57_V	65_T	0.834	1.00
273_N	278_Y	0.834	1.00
231_V	246_I	0.826	1.00
257_D	261_L	0.819	1.00
116_I	121_K	0.817	1.00
13_F	20_F	0.817	1.00
194_N	197_A	0.814	1.00
102_L	159_K	0.801	1.00
71_Y	90_D	0.801	1.00
108_V	162_L	0.798	1.00
250_P	255_T	0.798	1.00
272_I	275_K	0.796	1.00
74_Y	90_D	0.794	1.00
233_F	257_D	0.794	1.00
216_I	223_L	0.794	1.00
35_M	206_T	0.793	1.00
274_V	278_Y	0.792	1.00
102_L	111_I	0.788	1.00
272_I	276_I	0.785	1.00
30_D	236_R	0.781	1.00
109_E	119_W	0.779	1.00
138_V	165_A	0.775	1.00
40_L	209_F	0.774	1.00
238_V	252_H	0.772	1.00
75_N	79_N	0.768	1.00
228_N	239_E	0.768	1.00
142_P	146_F	0.767	1.00
257_D	260_K	0.766	1.00
119_W	122_I	0.762	1.00
193_L	219_Y	0.760	1.00
115_P	170_V	0.760	1.00
139_K	191_G	0.756	1.00
31_V	237_I	0.756	1.00
128_R	148_G	0.754	1.00
107_T	150_Y	0.752	1.00
17_V	22_K	0.750	1.00
120_E	130_R	0.747	1.00
174_I	206_T	0.746	1.00
68_E	78_K	0.745	1.00
57_V	69_V	0.743	1.00
108_V	154_L	0.736	1.00
254_Y	257_D	0.735	1.00
239_E	249_D	0.735	1.00
20_F	65_T	0.734	1.00
151_P	162_L	0.734	1.00
12_I	70_V	0.733	1.00
126_E	142_P	0.731	1.00
68_E	77_W	0.730	1.00
35_M	208_V	0.729	1.00
46_E	233_F	0.729	1.00
266_D	269_Y	0.726	1.00
115_P	166_R	0.724	1.00
140_L	146_F	0.721	1.00
20_F	57_V	0.719	1.00
224_F	229_T	0.718	1.00
86_K	89_K	0.715	1.00
40_L	223_L	0.714	1.00
269_Y	272_I	0.712	1.00
80_K	84_F	0.711	1.00
17_V	66_S	0.710	1.00
176_V	208_V	0.707	1.00
273_N	277_N	0.707	1.00
131_L	147_L	0.706	1.00
156_G	161_R	0.706	1.00
76_I	87_Y	0.704	1.00
13_F	18_G	0.703	1.00
214_I	247_L	0.702	1.00
194_N	219_Y	0.701	1.00
276_I	279_E	0.701	1.00
181_V	216_I	0.699	1.00
275_K	279_E	0.695	1.00
123_N	132_I	0.695	1.00
80_K	86_K	0.692	1.00
12_I	65_T	0.692	1.00
154_L	158_Q	0.689	1.00
146_F	158_Q	0.688	1.00
194_N	198_E	0.688	1.00
17_V	20_F	0.687	1.00
17_V	26_Y	0.683	1.00
40_L	225_D	0.682	1.00
197_A	201_N	0.681	1.00
28_L	54_L	0.680	1.00
224_F	243_L	0.676	1.00
44_L	231_V	0.673	1.00
231_V	250_P	0.672	1.00
134_L	168_L	0.672	1.00
89_K	120_E	0.671	1.00
94_I	167_S	0.671	1.00
174_I	208_V	0.671	1.00
102_L	162_L	0.664	1.00
219_Y	223_L	0.663	1.00
41_L	208_V	0.660	1.00
118_R	122_I	0.659	1.00
79_N	87_Y	0.658	1.00
119_W	123_N	0.655	1.00
254_Y	258_L	0.649	1.00
56_R	93_L	0.649	1.00
26_Y	30_D	0.644	1.00
239_E	250_P	0.641	1.00
127_L	132_I	0.639	1.00
71_Y	174_I	0.639	1.00
70_V	73_G	0.638	1.00
267_N	270_K	0.634	1.00
30_D	66_S	0.633	1.00
160_Q	183_M	0.631	1.00
131_L	134_L	0.630	1.00
117_L	124_K	0.628	1.00
191_G	194_N	0.626	1.00
261_L	264_S	0.624	1.00
274_V	277_N	0.623	1.00
71_Y	87_Y	0.621	1.00
225_D	228_N	0.619	1.00
107_T	111_I	0.619	1.00
52_T	56_R	0.617	1.00
268_L	272_I	0.617	1.00
117_L	121_K	0.616	1.00
69_V	77_W	0.616	1.00
233_F	236_R	0.616	1.00
21_K	26_Y	0.616	1.00
247_L	250_P	0.611	1.00
120_E	127_L	0.607	1.00
111_I	151_P	0.605	1.00
63_K	77_W	0.601	1.00
218_R	247_L	0.601	1.00
46_E	49_A	0.598	1.00
218_R	243_L	0.595	1.00
140_L	158_Q	0.594	1.00
211_T	216_I	0.593	1.00
134_L	138_V	0.587	1.00
164_I	192_I	0.587	1.00
59_V	91_V	0.586	1.00
86_K	90_D	0.586	1.00
17_V	32_S	0.582	1.00
76_I	91_V	0.581	1.00
71_Y	76_I	0.581	1.00
125_D	128_R	0.578	1.00
168_L	205_L	0.577	1.00
116_I	120_E	0.576	1.00
13_F	33_L	0.575	1.00
234_A	278_Y	0.573	1.00
249_D	252_H	0.571	1.00
112_L	131_L	0.571	1.00
129_K	132_I	0.570	1.00
61_L	95_P	0.568	1.00
173_R	205_L	0.565	1.00
18_G	64_P	0.563	1.00
120_E	123_N	0.562	1.00
47_S	179_E	0.562	1.00
101_T	163_S	0.561	1.00
128_R	131_L	0.558	1.00
256_N	259_I	0.557	1.00
217_A	224_F	0.556	1.00
241_A	247_L	0.556	1.00
120_E	124_K	0.554	1.00
46_E	254_Y	0.553	1.00
37_Q	206_T	0.552	1.00
258_L	262_T	0.552	1.00
130_R	137_L	0.550	1.00
259_I	263_P	0.549	1.00
265_I	268_L	0.547	1.00
181_V	192_I	0.546	1.00
22_K	27_A	0.545	1.00
20_F	53_T	0.543	1.00
58_I	69_V	0.543	1.00
249_D	253_P	0.543	1.00
38_G	206_T	0.541	1.00
19_L	66_S	0.541	1.00
117_L	120_E	0.537	1.00
113_V	147_L	0.537	1.00
262_T	265_I	0.537	1.00
267_N	271_E	0.536	1.00
129_K	136_E	0.534	1.00
274_V	279_E	0.534	1.00
241_A	250_P	0.533	1.00
113_V	116_I	0.532	1.00
14_E	23_R	0.530	1.00
15_D	32_S	0.525	1.00
19_L	22_K	0.521	1.00
258_L	261_L	0.520	1.00
33_L	41_L	0.517	1.00
34_S	240_R	0.516	1.00
250_P	259_I	0.516	1.00
245_E	251_L	0.516	1.00
239_E	251_L	0.514	1.00
244_E	247_L	0.507	1.00
135_L	146_F	0.507	1.00
20_F	62_Q	0.507	1.00
56_R	59_V	0.504	1.00
238_V	253_P	0.504	1.00
39_D	240_R	0.504	1.00
251_L	256_N	0.502	1.00
149_K	154_L	0.502	1.00
145_E	148_G	0.501	1.00
97_D	159_K	0.501	1.00
196_L	209_F	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tuiC	2	0.929	100	0.21	Contact Map
4ry2A	2	0.75	100	0.227	Contact Map
4fwiB	1	0.9228	100	0.23	Contact Map
4f4cA	1	0.7253	100	0.235	Contact Map
1oxxK	1	0.9259	100	0.236	Contact Map
4huqB	1	0.8488	100	0.238	Contact Map
4ymuJ	2	0.7407	100	0.239	Contact Map
4mkiB	2	0.8704	100	0.242	Contact Map
4huqA	1	0.8642	100	0.242	Contact Map
2oljA	2	0.7469	100	0.243	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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