Q97VD7 - SULSO - GREMLIN Contacts

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Q97VD7 - Uncharacterized protein

UniProt:	Q97VD7	Sequences: MKLKDVFNNTRPIRIARHTSLSEALERMDKQGVKFALIVDDSKGEEIIGIVTRSIILSSLGKGISQNEPVSKVMIKNVITINGEEDLIDTFMFMMKNNITHLLAINENGKIIGVVTLRDVLSAINKECERDID	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	133 (116)
Sequences:	14093 (10623)
Seq/√Len:	986.4

ECOLI - GUTQ YTFL KDSD YFJD IMDH CORC YOAE YEGH
BACSU - CCPN ACUB YLBB YHCV YKUL YTOI YHDP YHDT YRKA YUGS YQHB IMDH MGTE
HALSA - Q9HQD0 Q9HPF4 Q9HRK9 Q9HMW8 Q9HNB6 Q9HNT8 Q9HR38 Q9HN02 IMDH Q9HRX1 Q9HHN9 Q9HPN8
SULSO - Q97VD7 Q97U50 Q97U20 Q97U00 Q97VN1 Q981B7 Q7LXY4 Q97V95 Q7LXN6 Q97Z58 Q97U23

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
19_T	23_E	2.817	1.00
35_F	101_H	2.642	1.00
81_I	104_A	2.333	1.00
81_I	85_E	2.228	1.00
17_R	71_S	2.212	1.00
79_I	97_N	2.167	1.00
85_E	89_D	2.045	1.00
16_A	19_T	2.028	1.00
83_G	107_E	1.926	1.00
82_N	85_E	1.916	1.00
15_I	19_T	1.862	1.00
68_E	72_K	1.834	1.00
17_R	48_I	1.791	1.00
83_G	112_I	1.749	1.00
15_I	24_A	1.735	1.00
24_A	70_V	1.695	1.00
15_I	36_A	1.676	1.00
69_P	72_K	1.642	1.00
15_I	38_I	1.632	1.00
103_L	111_I	1.607	1.00
17_R	40_D	1.604	1.00
37_L	47_I	1.586	1.00
81_I	90_T	1.569	1.00
79_I	99_I	1.538	1.00
13_I	31_Q	1.519	1.00
4_K	83_G	1.457	1.00
24_A	51_V	1.445	1.00
27_R	31_Q	1.438	1.00
14_R	39_V	1.434	1.00
40_D	46_E	1.417	1.00
100_T	117_L	1.415	1.00
82_N	107_E	1.406	1.00
18_H	71_S	1.380	1.00
16_A	41_D	1.364	1.00
90_T	102_L	1.352	1.00
24_A	36_A	1.338	1.00
85_E	93_F	1.330	1.00
26_E	30_K	1.328	1.00
4_K	84_E	1.316	1.00
93_F	97_N	1.308	1.00
51_V	56_I	1.287	1.00
19_T	27_R	1.250	1.00
80_T	105_I	1.247	1.00
40_D	48_I	1.245	1.00
15_I	70_V	1.224	1.00
20_S	23_E	1.215	1.00
55_I	75_I	1.202	1.00
79_I	93_F	1.198	1.00
81_I	102_L	1.194	1.00
90_T	115_V	1.191	1.00
22_S	66_Q	1.185	1.00
51_V	70_V	1.180	1.00
22_S	26_E	1.161	1.00
21_L	73_V	1.159	1.00
23_E	26_E	1.158	1.00
68_E	73_V	1.139	1.00
86_D	89_D	1.135	1.00
35_F	50_I	1.133	1.00
92_M	96_K	1.130	1.00
25_L	56_I	1.121	1.00
53_R	57_L	1.083	1.00
51_V	73_V	1.080	1.00
13_I	27_R	1.080	1.00
47_I	111_I	1.075	1.00
38_I	74_M	1.066	1.00
27_R	30_K	1.065	1.00
34_K	53_R	1.064	1.00
6_V	87_L	1.061	1.00
39_V	48_I	1.047	1.00
33_V	36_A	1.029	1.00
6_V	115_V	1.009	1.00
89_D	93_F	1.004	1.00
47_I	78_V	0.998	1.00
87_L	120_V	0.983	1.00
22_S	67_N	0.968	1.00
66_Q	69_P	0.964	1.00
70_V	74_M	0.963	1.00
95_M	122_S	0.959	1.00
35_F	100_T	0.956	1.00
13_I	33_V	0.953	1.00
50_I	103_L	0.949	1.00
53_R	100_T	0.942	1.00
37_L	111_I	0.930	1.00
81_I	93_F	0.903	1.00
57_L	100_T	0.886	1.00
47_I	103_L	0.885	1.00
49_G	74_M	0.877	1.00
37_L	103_L	0.864	1.00
15_I	27_R	0.863	1.00
58_S	61_G	0.859	1.00
18_H	69_P	0.851	1.00
28_M	36_A	0.848	1.00
9_N	119_D	0.844	1.00
84_E	107_E	0.841	1.00
16_A	39_V	0.835	1.00
93_F	102_L	0.809	1.00
46_E	110_K	0.785	1.00
71_S	74_M	0.771	1.00
89_D	92_M	0.765	1.00
16_A	40_D	0.763	1.00
42_S	110_K	0.759	1.00
101_H	116_T	0.757	1.00
27_R	36_A	0.752	1.00
34_K	100_T	0.750	1.00
94_M	102_L	0.750	1.00
100_T	118_R	0.749	1.00
24_A	28_M	0.748	1.00
46_E	109_G	0.747	1.00
23_E	27_R	0.734	1.00
105_I	109_G	0.729	1.00
34_K	117_L	0.727	1.00
56_I	59_S	0.709	1.00
80_T	109_G	0.707	1.00
101_H	114_V	0.697	1.00
35_F	114_V	0.690	1.00
42_S	46_E	0.683	1.00
39_V	47_I	0.676	1.00
7_F	10_T	0.671	1.00
109_G	112_I	0.660	1.00
105_I	111_I	0.656	1.00
54_S	100_T	0.651	1.00
71_S	76_K	0.647	1.00
9_N	12_P	0.644	1.00
12_P	37_L	0.639	1.00
50_I	101_H	0.628	1.00
118_R	122_S	0.624	1.00
13_I	36_A	0.623	1.00
85_E	90_T	0.621	1.00
20_S	69_P	0.614	1.00
6_V	123_A	0.608	1.00
17_R	41_D	0.601	1.00
7_F	113_G	0.599	1.00
34_K	54_S	0.598	1.00
119_D	122_S	0.592	1.00
48_I	74_M	0.591	1.00
88_I	92_M	0.590	1.00
7_F	104_A	0.587	1.00
53_R	101_H	0.587	1.00
34_K	37_L	0.579	1.00
33_V	37_L	0.578	1.00
65_S	68_E	0.577	1.00
35_F	52_T	0.569	1.00
94_M	117_L	0.566	1.00
34_K	101_H	0.563	1.00
117_L	121_L	0.560	1.00
91_F	121_L	0.558	1.00
25_L	53_R	0.553	1.00
59_S	68_E	0.552	1.00
52_T	55_I	0.551	1.00
95_M	117_L	0.550	1.00
11_R	31_Q	0.544	1.00
59_S	63_G	0.543	1.00
82_N	105_I	0.541	1.00
50_I	75_I	0.538	1.00
78_V	103_L	0.538	1.00
98_N	118_R	0.537	1.00
29_D	53_R	0.532	1.00
21_L	59_S	0.532	1.00
82_N	109_G	0.531	1.00
115_V	120_V	0.530	1.00
50_I	78_V	0.526	1.00
90_T	94_M	0.526	1.00
21_L	70_V	0.525	1.00
14_R	36_A	0.520	1.00
37_L	48_I	0.519	1.00
9_N	114_V	0.514	1.00
37_L	114_V	0.512	1.00
25_L	51_V	0.512	1.00
7_F	112_I	0.503	1.00
75_I	79_I	0.502	1.00
25_L	29_D	0.502	1.00
57_L	61_G	0.502	1.00
91_F	95_M	0.501	1.00
12_P	33_V	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l2bA	2	0.8647	99.9	0.203	Contact Map
3pc3A	2	0.9398	99.8	0.243	Contact Map
4cooA	2	0.9248	99.8	0.243	Contact Map
1pvmA	2	0.9774	99.8	0.247	Contact Map
3ocoA	2	0.9098	99.8	0.248	Contact Map
3fhmA	2	0.9248	99.8	0.249	Contact Map
3orgA	2	0.8647	99.8	0.249	Contact Map
3lfrA	2	0.9474	99.8	0.256	Contact Map
2qrdG	1	0.9474	99.8	0.26	Contact Map
2yziA	2	0.9699	99.8	0.261	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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