Q97VD4 - SULSO - GREMLIN Contacts

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Q97VD4 - Acetyl-CoA c-acetyltransferase (Acetoacetyl-CoA thiolase) (AcaB-8)

UniProt:	Q97VD4	Sequences: MVAIIDASITRFGKRKESLLELAGEVALPLIGKYEIDFVVVSNSYSGEFNSLSGINNLITTYLSVDKVPSIRVDNTSGSGGSAILVAKSLLDSKITKTVLVLGVEKMSEKNTKQVTSVIASLLSPEEKIVGLTLPSLAGLMTKEYMRRYNASREAFALVAVKNHYNGSLNPFAHIQKVVSLEEVLNSPIIADPLTLYEFTPISDGASAIVMVRDEDAYSFTKKPVFIKGMGASSDTSYLSEREDILTMNAVRIAGLTARKMAKVDKVDFAELHDMATVLEIVEAEELGLLKKGEGWKAYYDDYTKINGEMPINTSGGLNSKGHPIGASGIAQAVEAFLQIRNQAGSRQVRNARVGLSLSMAGFGNSATVIIYGDEP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	376 (338)
Sequences:	15252 (8121)
Seq/√Len:	441.7

ECOLI - ATOB PAAJ YQEF FADA FADI
BACSU - THL YHFS FADA
HALSA - Q9HRI8 Q9HQZ8 Q9HNK4
SULSO - Q97VD4 Q97UW8 Q97WQ6 Q97UA5 Q97VJ9 Q97VU9 Q97WQ7 Q7LXW2 Q97VV9 Q97W61

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
162_K	166_N	3.510	1.00
216_D	220_F	3.495	1.00
155_A	285_E	3.353	1.00
96_T	99_V	3.083	1.00
161_V	181_L	2.943	1.00
84_I	333_A	2.890	1.00
336_A	348_Q	2.855	1.00
29_P	32_G	2.851	1.00
214_D	218_Y	2.823	1.00
156_F	193_P	2.740	1.00
216_D	219_S	2.719	1.00
169_L	173_A	2.699	1.00
162_K	165_Y	2.695	1.00
147_R	192_D	2.667	1.00
27_A	100_L	2.522	1.00
7_A	334_V	2.500	1.00
91_L	211_M	2.495	1.00
258_A	262_A	2.489	1.00
3_A	217_A	2.485	1.00
8_S	33_K	2.399	1.00
30_L	210_V	2.273	1.00
98_T	212_V	2.257	1.00
91_L	213_R	2.216	1.00
225_V	337_F	2.200	1.00
87_A	99_V	2.175	1.00
340_I	345_G	2.133	1.00
152_S	155_A	2.123	1.00
258_A	363_F	2.102	1.00
23_A	46_S	2.083	1.00
229_G	262_A	2.070	1.00
37_D	40_V	2.064	1.00
5_I	212_V	2.057	1.00
269_F	314_T	1.998	1.00
154_E	158_L	1.899	1.00
264_V	347_R	1.898	1.00
40_V	220_F	1.861	1.00
145_Y	151_A	1.859	1.00
207_S	330_I	1.859	1.00
229_G	258_A	1.800	1.00
284_A	291_K	1.789	1.00
284_A	312_I	1.784	1.00
184_V	197_Y	1.781	1.00
97_K	213_R	1.774	1.00
268_D	345_G	1.746	1.00
212_V	216_D	1.733	1.00
148_R	245_I	1.732	1.00
97_K	216_D	1.720	1.00
212_V	217_A	1.714	1.00
256_L	260_K	1.714	1.00
3_A	226_F	1.713	1.00
339_Q	343_Q	1.688	1.00
255_G	351_N	1.688	1.00
168_S	172_F	1.652	1.00
106_K	109_E	1.640	1.00
183_E	186_N	1.636	1.00
213_R	216_D	1.635	1.00
315_S	339_Q	1.631	1.00
264_V	267_V	1.630	1.00
90_L	96_T	1.626	1.00
46_S	102_L	1.619	1.00
209_I	330_I	1.616	1.00
267_V	270_A	1.616	1.00
71_I	86_V	1.612	1.00
89_S	95_I	1.606	1.00
87_A	211_M	1.606	1.00
30_L	34_Y	1.596	1.00
139_G	191_A	1.580	1.00
252_R	256_L	1.579	1.00
161_V	165_Y	1.562	1.00
98_T	216_D	1.562	1.00
23_A	59_I	1.561	1.00
21_E	62_Y	1.560	1.00
158_L	162_K	1.559	1.00
162_K	291_K	1.527	1.00
339_Q	342_N	1.510	1.00
27_A	59_I	1.508	1.00
269_F	339_Q	1.503	1.00
165_Y	178_V	1.499	1.00
28_L	32_G	1.487	1.00
26_V	208_A	1.487	1.00
270_A	349_V	1.485	1.00
175_I	315_S	1.481	1.00
29_P	33_K	1.467	1.00
158_L	181_L	1.461	1.00
337_F	341_R	1.440	1.00
85_L	362_G	1.438	1.00
175_I	339_Q	1.426	1.00
264_V	363_F	1.407	1.00
165_Y	169_L	1.405	1.00
231_G	257_T	1.403	1.00
26_V	206_A	1.403	1.00
231_G	258_A	1.394	1.00
6_D	30_L	1.380	1.00
267_V	363_F	1.373	1.00
168_S	178_V	1.370	1.00
257_T	260_K	1.365	1.00
24_G	62_Y	1.337	1.00
153_R	195_T	1.327	1.00
143_K	192_D	1.308	1.00
12_F	327_A	1.308	1.00
85_L	230_M	1.304	1.00
55_I	104_V	1.299	1.00
290_L	311_P	1.297	1.00
215_E	219_S	1.278	1.00
42_S	96_T	1.274	1.00
256_L	286_E	1.272	1.00
155_A	158_L	1.268	1.00
84_I	209_I	1.253	1.00
48_E	51_S	1.249	1.00
334_V	338_L	1.244	1.00
226_F	365_N	1.236	1.00
254_A	361_A	1.230	1.00
314_T	339_Q	1.228	1.00
25_E	29_P	1.221	1.00
333_A	364_G	1.221	1.00
78_G	360_M	1.214	1.00
46_S	208_A	1.203	1.00
100_L	210_V	1.200	1.00
140_L	192_D	1.194	1.00
41_V	98_T	1.194	1.00
349_V	363_F	1.194	1.00
7_A	338_L	1.185	1.00
6_D	34_Y	1.183	1.00
40_V	216_D	1.176	1.00
159_V	280_E	1.164	1.00
151_A	156_F	1.164	1.00
255_G	349_V	1.160	1.00
144_E	148_R	1.155	1.00
3_A	214_D	1.152	1.00
81_G	333_A	1.147	1.00
175_I	342_N	1.141	1.00
78_G	354_V	1.131	1.00
331_A	335_E	1.126	1.00
179_V	184_V	1.126	1.00
45_Y	99_V	1.123	1.00
227_I	362_G	1.123	1.00
42_S	97_K	1.118	1.00
267_V	347_R	1.112	1.00
171_P	177_K	1.112	1.00
159_V	281_I	1.107	1.00
181_L	185_L	1.104	1.00
233_S	252_R	1.104	1.00
3_A	212_V	1.103	1.00
82_S	86_V	1.101	1.00
12_F	321_K	1.099	1.00
180_S	183_E	1.093	1.00
7_A	337_F	1.093	1.00
95_I	261_M	1.092	1.00
6_D	33_K	1.090	1.00
245_I	248_M	1.088	1.00
92_D	95_I	1.088	1.00
235_D	248_M	1.085	1.00
229_G	261_M	1.081	1.00
268_D	311_P	1.079	1.00
84_I	211_M	1.077	1.00
47_G	79_S	1.076	1.00
139_G	190_I	1.072	1.00
233_S	257_T	1.070	1.00
143_K	147_R	1.066	1.00
269_F	343_Q	1.065	1.00
8_S	29_P	1.061	1.00
87_A	101_V	1.060	1.00
248_M	251_V	1.056	1.00
89_S	93_S	1.055	1.00
161_V	184_V	1.053	1.00
27_A	65_V	1.051	1.00
151_A	281_I	1.039	1.00
18_S	21_E	1.037	1.00
346_S	365_N	1.036	1.00
40_V	219_S	1.033	1.00
154_E	185_L	1.026	1.00
165_Y	168_S	1.023	1.00
214_D	226_F	1.018	1.00
24_G	28_L	1.018	1.00
31_I	65_V	1.017	1.00
16_K	119_I	1.016	1.00
268_D	340_I	1.009	1.00
12_F	203_S	1.004	1.00
44_S	60_T	1.004	1.00
187_S	197_Y	0.994	1.00
149_Y	248_M	0.993	1.00
336_A	350_R	0.993	1.00
314_T	343_Q	0.989	1.00
88_K	227_I	0.970	1.00
228_K	347_R	0.968	1.00
251_V	286_E	0.966	1.00
267_V	354_V	0.964	1.00
5_I	222_K	0.964	1.00
289_L	312_I	0.960	1.00
207_S	327_A	0.955	1.00
315_S	342_N	0.955	1.00
270_A	289_L	0.951	1.00
65_V	68_V	0.947	1.00
336_A	355_G	0.945	1.00
228_K	365_N	0.943	1.00
262_A	363_F	0.943	1.00
130_V	135_P	0.942	1.00
11_R	25_E	0.941	1.00
26_V	29_P	0.940	1.00
10_T	26_V	0.940	1.00
248_M	286_E	0.939	1.00
148_R	238_Y	0.938	1.00
187_S	195_T	0.937	1.00
161_V	178_V	0.934	1.00
257_T	261_M	0.930	1.00
88_K	92_D	0.929	1.00
267_V	349_V	0.925	1.00
146_M	278_V	0.922	1.00
10_T	25_E	0.917	1.00
255_G	287_L	0.916	1.00
248_M	282_V	0.907	1.00
101_V	209_I	0.901	1.00
264_V	354_V	0.899	1.00
207_S	334_V	0.897	1.00
149_Y	286_E	0.896	1.00
188_P	196_L	0.891	1.00
277_T	319_N	0.890	1.00
174_H	177_K	0.888	1.00
212_V	222_K	0.888	1.00
31_I	36_I	0.887	1.00
144_E	147_R	0.882	1.00
269_F	336_A	0.881	1.00
272_L	351_N	0.878	1.00
145_Y	248_M	0.877	1.00
45_Y	71_I	0.873	1.00
157_A	198_E	0.872	1.00
12_F	331_A	0.872	1.00
45_Y	83_A	0.870	1.00
26_V	30_L	0.870	1.00
45_Y	87_A	0.869	1.00
332_Q	350_R	0.869	1.00
10_T	22_L	0.866	1.00
7_A	209_I	0.866	1.00
214_D	217_A	0.864	1.00
127_E	130_V	0.863	1.00
318_L	328_S	0.861	1.00
179_V	183_E	0.855	1.00
333_A	362_G	0.854	1.00
173_A	342_N	0.854	1.00
121_S	126_E	0.853	1.00
189_I	192_D	0.852	1.00
18_S	109_E	0.850	1.00
145_Y	282_V	0.848	1.00
30_L	100_L	0.847	1.00
4_I	364_G	0.839	1.00
117_S	121_S	0.839	1.00
129_I	133_T	0.832	1.00
284_A	289_L	0.832	1.00
227_I	230_M	0.832	1.00
235_D	252_R	0.831	1.00
162_K	292_K	0.830	1.00
90_L	95_I	0.829	1.00
75_N	82_S	0.824	1.00
154_E	181_L	0.821	1.00
280_E	284_A	0.819	1.00
336_A	357_S	0.819	1.00
40_V	98_T	0.818	1.00
235_D	249_N	0.813	1.00
215_E	218_Y	0.810	1.00
95_I	230_M	0.807	1.00
132_L	135_P	0.807	1.00
43_N	90_L	0.804	1.00
42_S	257_T	0.801	1.00
259_R	264_V	0.794	1.00
116_T	121_S	0.792	1.00
23_A	102_L	0.790	1.00
255_G	361_A	0.789	1.00
8_S	26_V	0.788	1.00
198_E	277_T	0.785	1.00
19_L	104_V	0.783	1.00
164_H	178_V	0.783	1.00
315_S	343_Q	0.782	1.00
83_A	330_I	0.782	1.00
256_L	287_L	0.781	1.00
30_L	208_A	0.781	1.00
229_G	363_F	0.781	1.00
167_G	171_P	0.779	1.00
161_V	180_S	0.777	1.00
86_V	90_L	0.775	1.00
238_Y	245_I	0.773	1.00
31_I	41_V	0.771	1.00
44_S	68_V	0.771	1.00
251_V	256_L	0.771	1.00
182_E	186_N	0.769	1.00
81_G	362_G	0.769	1.00
155_A	281_I	0.767	1.00
161_V	179_V	0.764	1.00
169_L	175_I	0.764	1.00
100_L	208_A	0.763	1.00
265_D	311_P	0.763	1.00
142_T	278_V	0.763	1.00
86_V	89_S	0.759	1.00
25_E	28_L	0.757	1.00
223_K	341_R	0.756	1.00
166_N	169_L	0.755	1.00
4_I	337_F	0.754	1.00
28_L	38_F	0.752	1.00
46_S	56_N	0.751	1.00
41_V	100_L	0.748	1.00
108_S	204_D	0.748	1.00
48_E	55_I	0.742	1.00
43_N	232_A	0.738	1.00
272_L	283_E	0.736	1.00
89_S	92_D	0.733	1.00
140_L	144_E	0.729	1.00
161_V	183_E	0.723	1.00
340_I	348_Q	0.722	1.00
169_L	172_F	0.721	1.00
258_A	349_V	0.717	1.00
127_E	131_G	0.716	1.00
65_V	100_L	0.712	1.00
228_K	262_A	0.709	1.00
265_D	288_G	0.709	1.00
268_D	347_R	0.707	1.00
97_K	261_M	0.706	1.00
354_V	360_M	0.704	1.00
167_G	320_S	0.702	1.00
255_G	272_L	0.699	1.00
236_T	245_I	0.699	1.00
90_L	99_V	0.699	1.00
75_N	232_A	0.698	1.00
157_A	185_L	0.698	1.00
27_A	63_L	0.698	1.00
179_V	197_Y	0.696	1.00
49_F	325_I	0.696	1.00
164_H	319_N	0.696	1.00
344_A	347_R	0.692	1.00
97_K	219_S	0.688	1.00
45_Y	86_V	0.686	1.00
337_F	364_G	0.686	1.00
221_T	224_P	0.686	1.00
23_A	104_V	0.683	1.00
85_L	360_M	0.681	1.00
127_E	132_L	0.679	1.00
347_R	363_F	0.678	1.00
209_I	334_V	0.677	1.00
282_V	286_E	0.675	1.00
42_S	99_V	0.672	1.00
8_S	30_L	0.670	1.00
211_M	227_I	0.668	1.00
142_T	146_M	0.667	1.00
3_A	213_R	0.667	1.00
31_I	38_F	0.661	1.00
168_S	171_P	0.660	1.00
27_A	208_A	0.659	1.00
142_T	194_L	0.659	1.00
141_M	246_L	0.658	1.00
84_I	101_V	0.658	1.00
21_E	24_G	0.655	1.00
24_G	63_L	0.651	1.00
59_I	63_L	0.650	0.99
39_V	67_K	0.649	0.99
231_G	261_M	0.649	0.99
43_N	75_N	0.647	0.99
151_A	155_A	0.647	0.99
46_S	59_I	0.647	0.99
20_L	62_Y	0.646	0.99
69_P	232_A	0.646	0.99
123_L	126_E	0.645	0.99
27_A	31_I	0.644	0.99
98_T	220_F	0.644	0.99
280_E	312_I	0.641	0.99
5_I	217_A	0.639	0.99
181_L	184_V	0.638	0.99
31_I	34_Y	0.638	0.99
194_L	199_F	0.637	0.99
190_I	196_L	0.636	0.99
28_L	63_L	0.634	0.99
228_K	264_V	0.634	0.99
60_T	65_V	0.633	0.99
341_R	344_A	0.633	0.99
270_A	351_N	0.632	0.99
28_L	64_S	0.632	0.99
164_H	168_S	0.631	0.99
212_V	220_F	0.631	0.99
137_L	140_L	0.630	0.99
321_K	331_A	0.629	0.99
87_A	96_T	0.629	0.99
71_I	82_S	0.628	0.99
255_G	259_R	0.628	0.99
127_E	133_T	0.628	0.99
60_T	70_S	0.626	0.99
107_M	325_I	0.625	0.99
3_A	216_D	0.623	0.99
73_V	86_V	0.622	0.99
31_I	35_E	0.621	0.99
41_V	65_V	0.619	0.99
157_A	181_L	0.618	0.99
354_V	358_L	0.616	0.99
131_G	134_L	0.616	0.99
54_G	358_L	0.615	0.99
81_G	350_R	0.613	0.99
333_A	350_R	0.611	0.99
44_S	100_L	0.609	0.99
279_L	283_E	0.608	0.99
268_D	346_S	0.607	0.99
145_Y	149_Y	0.606	0.99
5_I	216_D	0.605	0.99
275_M	323_H	0.605	0.99
92_D	230_M	0.604	0.99
151_A	285_E	0.603	0.99
255_G	283_E	0.603	0.99
167_G	321_K	0.602	0.99
83_A	101_V	0.602	0.99
136_S	238_Y	0.599	0.99
327_A	330_I	0.598	0.99
102_L	208_A	0.597	0.99
122_L	125_P	0.596	0.99
328_S	332_Q	0.594	0.99
51_S	72_R	0.593	0.99
254_A	258_A	0.592	0.99
321_K	335_E	0.591	0.99
256_L	288_G	0.587	0.99
43_N	96_T	0.584	0.99
162_K	280_E	0.584	0.99
259_R	262_A	0.583	0.99
3_A	220_F	0.582	0.99
149_Y	282_V	0.581	0.99
146_M	151_A	0.579	0.99
4_I	211_M	0.579	0.99
121_S	124_S	0.577	0.99
45_Y	90_L	0.577	0.99
57_N	61_T	0.576	0.99
225_V	340_I	0.574	0.99
178_V	183_E	0.572	0.99
136_S	144_E	0.572	0.99
278_V	282_V	0.572	0.99
112_T	116_T	0.571	0.99
42_S	68_V	0.570	0.99
38_F	66_D	0.569	0.99
160_A	277_T	0.569	0.99
117_S	120_A	0.568	0.99
136_S	140_L	0.566	0.99
160_A	164_H	0.565	0.99
82_S	232_A	0.563	0.99
82_S	85_L	0.563	0.99
59_I	104_V	0.563	0.99
281_I	285_E	0.562	0.99
112_T	117_S	0.561	0.99
232_A	360_M	0.560	0.99
84_I	227_I	0.559	0.98
349_V	352_A	0.559	0.98
345_G	348_Q	0.556	0.98
82_S	90_L	0.556	0.98
166_N	291_K	0.556	0.98
284_A	290_L	0.556	0.98
36_I	210_V	0.555	0.98
160_A	184_V	0.555	0.98
317_G	320_S	0.554	0.98
269_F	355_G	0.552	0.98
146_M	193_P	0.551	0.98
272_L	280_E	0.551	0.98
164_H	201_P	0.550	0.98
43_N	99_V	0.547	0.98
158_L	291_K	0.545	0.98
143_K	194_L	0.544	0.98
169_L	346_S	0.542	0.98
50_N	110_K	0.542	0.98
122_L	126_E	0.540	0.98
131_G	135_P	0.539	0.98
149_Y	245_I	0.539	0.98
90_L	93_S	0.538	0.98
101_V	330_I	0.537	0.98
285_E	288_G	0.535	0.98
182_E	185_L	0.534	0.98
258_A	267_V	0.534	0.98
5_I	98_T	0.534	0.98
158_L	161_V	0.532	0.98
52_L	58_L	0.531	0.98
348_Q	364_G	0.531	0.98
79_S	326_G	0.530	0.98
157_A	184_V	0.530	0.98
85_L	89_S	0.530	0.98
334_V	337_F	0.529	0.98
49_F	76_T	0.528	0.98
275_M	279_L	0.528	0.98
81_G	360_M	0.527	0.98
227_I	364_G	0.527	0.98
6_D	210_V	0.526	0.98
330_I	334_V	0.526	0.98
149_Y	285_E	0.526	0.98
88_K	230_M	0.523	0.98
217_A	220_F	0.522	0.98
159_V	317_G	0.519	0.98
164_H	179_V	0.518	0.98
266_K	347_R	0.517	0.98
34_Y	210_V	0.517	0.98
262_A	267_V	0.516	0.97
213_R	217_A	0.515	0.97
85_L	232_A	0.514	0.97
45_Y	73_V	0.513	0.97
180_S	184_V	0.513	0.97
165_Y	181_L	0.512	0.97
259_R	267_V	0.511	0.97
42_S	69_P	0.511	0.97
84_I	330_I	0.510	0.97
327_A	331_A	0.510	0.97
20_L	24_G	0.507	0.97
54_G	76_T	0.506	0.97
56_N	72_R	0.506	0.97
81_G	352_A	0.505	0.97
231_G	262_A	0.504	0.97
97_K	215_E	0.504	0.97
127_E	135_P	0.503	0.97
123_L	137_L	0.501	0.97
53_S	76_T	0.500	0.97
145_Y	278_V	0.500	0.97

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3zbgA	2	0.9894	100	0.238	Contact Map
4u4eA	1	0.9229	100	0.297	Contact Map
1wdkC	2	0.9043	100	0.354	Contact Map
1ulqA	4	0.9149	100	0.357	Contact Map
2wu9A	2	0.9096	100	0.358	Contact Map
4e1lA	4	0.891	100	0.362	Contact Map
2vu1A	4	0.9069	100	0.363	Contact Map
3goaA	2	0.8883	100	0.366	Contact Map
1wl4A	4	0.9069	100	0.367	Contact Map
4n46A	4	0.9096	100	0.367	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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