Q97VC1 - SULSO - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

Q97VC1 - ABC transporter, ATP binding protein

UniProt:	Q97VC1	Sequences: MITLKEVTKFFGSFKVIDSISLNVEKGEFFVILGKSGSGKTTLLRLIAGLEKVSSGKILISNEDVTDLPPSKRDIGMVFQSYALYPNKKVFENLMIALENSEINKKDKEERIIEISKQLEIYHLMDKYPAQLSGGQQQRVAIAKALVKRPKVLLMDEPLSNLDVQLRYSARKLIKKVQKEFNITTIYVTHDSNEALAIADRIGVIDKGRLLQVGIPEDIYNNPLSKEVASLVGNPPMSFVKIDGKIIGVRPDNIIIKDNGTYEGIVSNCEFWGSYYLIYIDFIDNEVKAISKERIKEGSKVKFDFISYKVFSND	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	314 (241)
Sequences:	57033 (34689)
Seq/√Len:	2234.5

ECOLI - POTG FBPC CYSA MALK YCJV POTA PROV YDCT UGPC METN DPPF YEHX DPPD SAPD OPPD YADG MODC DDPD OPPF ARAG YHES DDPF UUP RBSA GSIA MACB FEPC TAUB MLAF CYDC YTFR MDLB MSBA HISP YECC MDLA SAPF LSRA FECE NIKE SSUB LPTB ETTA GLNQ PHNC FHUC CYDD YHDZ YOJI GLTL ZNUC YPHE THIQ PHNK SUFC LIVG XYLG FTSE LIVF ARTP ALSA MODF PSTB LOLD MGLA NIKD BTUD FETA YBBA CCMA PHNL YNJD YDDA YBHF YEJF YBIT YHIH
BACSU - YURJ OPUAA OPUCA MSMX OPUBA YVRA YKFD OPPD METN DPPD APPD YFIL YHCH YKPA YXLF APPF YDBJ YHAQ TAGH YCBN OPPF YFMM YVFR RBSA YDIF YTRB YFMR YUSV YHEH ECFA1 FHUC YFMF YFIC SUNT YFIB TCYN YGAD YKNV YKNU YLMA BMRA YTLC ECSA YCLP YHEI SKFE YWJA CYDD BCEA SUFC ECFA2 YXDL YXEO YVCR GLNQ CYDC NATA FTSE TCYC ARTM YKOD ALBC MNTB SSUB YVRO YTHP PSTB1 EXPZ YKNY YJKB PSTB2 YYBJ ZNUC YCLH YUFO YHCG YYDI YTRE
HALSA - Q9HHQ5 BTUDA Q9HMX3 Q9HNZ9 Q9HMW0 Q9HMT3 Q9HR06 Q9HMX2 Q9HRJ6 Q9HMU8 Q9HMG1 Q9HRH8 Q9HHM2 PSTB2 PHNC Q9HSQ7 Q9HNY3 Q9HMG6 Q9HRZ9 Y2317 Q9HRV7 Y1631 PSTB1 Q9HR96 Q9HHR7 Q9HQA8 Q9HT03 Q9HS04 Q9HR21 Q9HMC1 Q9HMW1
SULSO - Q97VC1 Q97UF2 Q97ZC0 Q97YY4 Q97UY8 Q97UH3 Q97VF5 Q7LX64 Q97YP3 Q97VH6 Q97VK8 Q97YK2 Q97VK9 Q97YP7 Q97UD4 Q97X18 Q97UJ9 Q97VF4 Q97YP8 Q97YQ7 Q97Z03 Q97U54 Y1893 Q980W0 Y2030 Q97UH4 Q7LY07 Q97V01 Q97W42 PSTB Q97V00 Q7LXM4 Q97VY4 Q97VM2 Q7LX80 Q97Z56 Q97UC2 Q97UG5 Q97Z96 Q97YP4 Q97ZU0 Q980K5 Q980E6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
28_E	201_R	3.758	1.00
74_D	151_K	3.040	1.00
3_T	23_N	3.003	1.00
30_F	203_G	2.914	1.00
6_E	19_S	2.910	1.00
15_K	18_D	2.889	1.00
5_K	57_K	2.863	1.00
31_V	199_A	2.853	1.00
124_L	127_K	2.591	1.00
57_K	64_D	2.576	1.00
9_K	46_L	2.572	1.00
10_F	15_K	2.477	1.00
61_S	151_K	2.443	1.00
25_E	28_E	2.377	1.00
215_I	218_D	2.367	1.00
3_T	59_L	2.329	1.00
201_R	213_V	2.312	1.00
8_T	55_S	2.276	1.00
203_G	210_L	2.244	1.00
214_G	218_D	2.151	1.00
104_N	107_D	2.123	1.00
18_D	209_R	2.053	1.00
5_K	59_L	2.015	1.00
8_T	15_K	1.947	1.00
4_L	7_V	1.942	1.00
8_T	19_S	1.941	1.00
113_I	125_M	1.929	1.00
196_L	217_E	1.913	1.00
26_K	151_K	1.869	1.00
111_R	114_E	1.854	1.00
111_R	149_R	1.829	1.00
203_G	213_V	1.762	1.00
11_F	42_T	1.739	1.00
44_L	154_L	1.719	1.00
44_L	188_V	1.685	1.00
127_K	131_Q	1.675	1.00
177_V	183_I	1.664	1.00
91_F	126_D	1.628	1.00
91_F	125_M	1.625	1.00
114_E	118_Q	1.594	1.00
214_G	219_I	1.577	1.00
64_D	67_D	1.574	1.00
9_K	51_E	1.570	1.00
11_F	16_V	1.567	1.00
31_V	195_A	1.554	1.00
115_I	147_V	1.554	1.00
189_T	195_A	1.537	1.00
175_K	197_A	1.518	1.00
109_E	113_I	1.518	1.00
9_K	54_S	1.512	1.00
95_M	112_I	1.463	1.00
91_F	95_M	1.462	1.00
7_V	53_V	1.450	1.00
61_S	74_D	1.449	1.00
6_E	21_S	1.422	1.00
218_D	222_N	1.395	1.00
89_K	92_E	1.394	1.00
8_T	18_D	1.393	1.00
175_K	178_Q	1.379	1.00
88_K	92_E	1.370	1.00
116_S	125_M	1.369	1.00
4_L	22_L	1.367	1.00
22_L	203_G	1.353	1.00
95_M	108_K	1.350	1.00
94_L	116_S	1.346	1.00
155_M	185_T	1.341	1.00
10_F	54_S	1.323	1.00
124_L	132_L	1.319	1.00
24_V	30_F	1.308	1.00
20_I	43_L	1.293	1.00
59_L	64_D	1.293	1.00
29_F	178_Q	1.292	1.00
4_L	47_I	1.282	1.00
99_E	108_K	1.265	1.00
30_F	213_V	1.264	1.00
149_R	183_I	1.256	1.00
91_F	109_E	1.240	1.00
28_E	200_D	1.239	1.00
110_E	114_E	1.221	1.00
211_L	225_S	1.192	1.00
22_L	43_L	1.191	1.00
89_K	126_D	1.183	1.00
117_K	122_Y	1.171	1.00
105_K	108_K	1.170	1.00
63_E	68_L	1.162	1.00
206_D	211_L	1.159	1.00
29_F	185_T	1.157	1.00
113_I	117_K	1.157	1.00
226_K	230_S	1.150	1.00
30_F	201_R	1.149	1.00
171_R	194_E	1.146	1.00
25_E	201_R	1.145	1.00
91_F	112_I	1.143	1.00
106_K	110_E	1.143	1.00
26_K	61_S	1.138	1.00
49_G	52_K	1.135	1.00
48_A	77_M	1.126	1.00
78_V	155_M	1.125	1.00
46_L	53_V	1.124	1.00
5_K	23_N	1.108	1.00
5_K	21_S	1.104	1.00
109_E	125_M	1.103	1.00
216_P	220_Y	1.100	1.00
178_Q	185_T	1.100	1.00
226_K	229_A	1.098	1.00
51_E	54_S	1.094	1.00
93_N	144_K	1.087	1.00
217_E	221_N	1.087	1.00
95_M	99_E	1.085	1.00
32_I	186_I	1.079	1.00
107_D	110_E	1.074	1.00
229_A	233_G	1.059	1.00
17_I	46_L	1.054	1.00
45_R	50_L	1.050	1.00
103_I	107_D	1.047	1.00
119_L	143_A	1.044	1.00
90_V	132_L	1.031	1.00
178_Q	200_D	1.027	1.00
132_L	140_V	1.024	1.00
26_K	182_N	1.017	1.00
76_G	145_A	1.012	1.00
202_I	216_P	1.012	1.00
92_E	95_M	1.012	1.00
45_R	51_E	0.995	1.00
218_D	221_N	0.994	1.00
111_R	115_I	0.992	1.00
113_I	121_I	0.992	1.00
95_M	109_E	0.986	1.00
114_E	117_K	0.985	1.00
174_I	185_T	0.980	1.00
89_K	128_Y	0.979	1.00
87_N	130_A	0.977	1.00
162_L	170_A	0.976	1.00
115_I	118_Q	0.974	1.00
94_L	147_V	0.971	1.00
29_F	199_A	0.961	1.00
120_E	169_S	0.957	1.00
206_D	230_S	0.952	1.00
128_Y	131_Q	0.945	1.00
210_L	213_V	0.942	1.00
47_I	186_I	0.941	1.00
6_E	55_S	0.940	1.00
173_L	176_K	0.937	1.00
88_K	93_N	0.932	1.00
228_V	232_V	0.924	1.00
167_R	191_D	0.922	1.00
98_L	147_V	0.922	1.00
91_F	113_I	0.917	1.00
103_I	108_K	0.911	1.00
38_S	205_I	0.910	1.00
25_E	184_T	0.910	1.00
115_I	143_A	0.907	1.00
96_I	100_N	0.896	1.00
97_A	100_N	0.892	1.00
220_Y	223_P	0.891	1.00
10_F	18_D	0.889	1.00
118_Q	176_K	0.888	1.00
76_G	150_P	0.887	1.00
48_A	154_L	0.884	1.00
171_R	197_A	0.884	1.00
78_V	142_I	0.875	1.00
104_N	108_K	0.871	1.00
43_L	205_I	0.870	1.00
32_I	43_L	0.870	1.00
88_K	96_I	0.865	1.00
153_L	183_I	0.864	1.00
4_L	43_L	0.860	1.00
17_I	20_I	0.860	1.00
237_M	240_V	0.856	1.00
9_K	42_T	0.850	1.00
167_R	194_E	0.846	1.00
90_V	140_V	0.846	1.00
46_L	51_E	0.842	1.00
32_I	203_G	0.841	1.00
175_K	198_I	0.839	1.00
78_V	145_A	0.835	1.00
129_P	140_V	0.833	1.00
168_Y	172_K	0.832	1.00
24_V	152_V	0.832	1.00
153_L	185_T	0.831	1.00
120_E	176_K	0.828	1.00
109_E	112_I	0.827	1.00
7_V	46_L	0.827	1.00
155_M	174_I	0.827	1.00
187_Y	199_A	0.822	1.00
24_V	184_T	0.816	1.00
199_A	202_I	0.814	1.00
204_V	219_I	0.814	1.00
29_F	175_K	0.814	1.00
2_I	152_V	0.809	1.00
84_L	137_Q	0.809	1.00
29_F	198_I	0.801	1.00
4_L	58_I	0.800	1.00
225_S	228_V	0.799	1.00
157_E	190_H	0.798	1.00
108_K	112_I	0.796	1.00
73_R	101_S	0.796	1.00
19_S	55_S	0.796	1.00
201_R	212_Q	0.793	1.00
113_I	123_H	0.793	1.00
97_A	148_K	0.787	1.00
172_K	175_K	0.787	1.00
217_E	220_Y	0.786	1.00
101_S	111_R	0.784	1.00
216_P	227_E	0.779	1.00
216_P	219_I	0.773	1.00
187_Y	198_I	0.770	1.00
46_L	58_I	0.770	1.00
89_K	93_N	0.765	1.00
57_K	66_T	0.764	1.00
110_E	113_I	0.764	1.00
115_I	119_L	0.757	1.00
10_F	13_S	0.756	1.00
239_F	242_I	0.755	1.00
204_V	223_P	0.754	1.00
85_Y	88_K	0.751	1.00
97_A	144_K	0.748	1.00
63_E	74_D	0.743	1.00
152_V	184_T	0.742	1.00
17_I	43_L	0.742	1.00
98_L	102_E	0.741	1.00
87_N	92_E	0.740	1.00
99_E	105_K	0.739	1.00
172_K	197_A	0.732	1.00
112_I	115_I	0.731	1.00
230_S	234_N	0.730	1.00
107_D	111_R	0.730	1.00
194_E	198_I	0.727	1.00
105_K	109_E	0.726	1.00
59_L	62_N	0.721	1.00
235_P	238_S	0.719	1.00
219_I	223_P	0.718	1.00
117_K	123_H	0.717	1.00
115_I	146_L	0.717	1.00
20_I	210_L	0.715	1.00
132_L	136_Q	0.713	1.00
33_L	195_A	0.713	1.00
65_V	68_L	0.713	1.00
80_Q	134_G	0.708	1.00
230_S	233_G	0.708	1.00
30_F	186_I	0.706	1.00
9_K	17_I	0.703	1.00
154_L	186_I	0.702	1.00
175_K	179_K	0.698	1.00
206_D	209_R	0.694	1.00
19_S	209_R	0.694	1.00
75_I	152_V	0.687	1.00
16_V	42_T	0.685	1.00
124_L	136_Q	0.683	1.00
109_E	126_D	0.682	1.00
6_E	9_K	0.679	1.00
24_V	186_I	0.677	1.00
103_I	111_R	0.676	1.00
93_N	129_P	0.675	1.00
29_F	187_Y	0.674	1.00
41_T	45_R	0.674	1.00
151_K	183_I	0.671	1.00
219_I	228_V	0.668	1.00
159_L	194_E	0.668	1.00
10_F	16_V	0.664	1.00
84_L	93_N	0.662	1.00
33_L	204_V	0.659	1.00
10_F	55_S	0.654	1.00
86_P	130_A	0.642	1.00
101_S	148_K	0.641	1.00
122_Y	125_M	0.641	1.00
2_I	47_I	0.640	1.00
57_K	67_D	0.639	1.00
50_L	79_F	0.637	1.00
48_A	75_I	0.634	1.00
192_S	220_Y	0.633	1.00
60_I	74_D	0.633	1.00
27_G	184_T	0.632	1.00
46_L	54_S	0.632	1.00
35_K	38_S	0.632	1.00
227_E	231_L	0.630	1.00
94_L	112_I	0.629	1.00
172_K	176_K	0.628	1.00
112_I	125_M	0.621	1.00
60_I	65_V	0.621	1.00
45_R	77_M	0.617	1.00
152_V	186_I	0.615	1.00
159_L	170_A	0.614	1.00
65_V	75_I	0.613	1.00
2_I	60_I	0.613	1.00
133_S	136_Q	0.612	1.00
29_F	200_D	0.610	1.00
199_A	216_P	0.606	1.00
11_F	51_E	0.606	1.00
207_K	230_S	0.603	1.00
206_D	225_S	0.601	1.00
35_K	206_D	0.600	1.00
227_E	230_S	0.598	1.00
98_L	103_I	0.598	1.00
223_P	228_V	0.598	1.00
47_I	58_I	0.593	1.00
53_V	66_T	0.591	1.00
228_V	231_L	0.588	1.00
96_I	99_E	0.586	1.00
98_L	101_S	0.585	1.00
206_D	227_E	0.584	1.00
65_V	70_P	0.579	1.00
78_V	138_Q	0.578	1.00
235_P	239_F	0.577	1.00
76_G	148_K	0.577	1.00
127_K	132_L	0.574	1.00
196_L	216_P	0.574	1.00
53_V	58_I	0.573	1.00
58_I	66_T	0.572	1.00
229_A	232_V	0.569	1.00
195_A	202_I	0.567	1.00
155_M	187_Y	0.567	1.00
110_E	117_K	0.566	1.00
222_N	226_K	0.566	1.00
98_L	108_K	0.564	1.00
84_L	129_P	0.564	1.00
101_S	108_K	0.561	1.00
95_M	98_L	0.557	1.00
146_L	183_I	0.556	1.00
178_Q	183_I	0.555	1.00
3_T	62_N	0.553	1.00
36_S	157_E	0.552	1.00
164_V	168_Y	0.549	1.00
111_R	118_Q	0.547	1.00
27_G	182_N	0.546	1.00
240_V	243_D	0.545	1.00
23_N	213_V	0.545	1.00
62_N	65_V	0.543	1.00
116_S	124_L	0.543	1.00
169_S	172_K	0.541	1.00
121_I	136_Q	0.537	1.00
121_I	124_L	0.536	1.00
68_L	71_S	0.536	1.00
7_V	58_I	0.535	1.00
15_K	19_S	0.534	1.00
66_T	69_P	0.533	1.00
82_Y	137_Q	0.532	1.00
64_D	68_L	0.532	1.00
78_V	141_A	0.532	1.00
14_F	207_K	0.530	1.00
193_N	197_A	0.529	1.00
138_Q	161_N	0.528	1.00
91_F	94_L	0.527	1.00
83_A	86_P	0.526	1.00
212_Q	222_N	0.524	1.00
195_A	199_A	0.522	1.00
171_R	187_Y	0.522	1.00
60_I	152_V	0.521	1.00
224_L	229_A	0.516	1.00
26_K	184_T	0.515	1.00
116_S	121_I	0.510	1.00
120_E	123_H	0.509	1.00
90_V	93_N	0.509	1.00
90_V	94_L	0.508	1.00
32_I	205_I	0.506	1.00
38_S	207_K	0.505	1.00
218_D	224_L	0.504	1.00
195_A	216_P	0.504	1.00
82_Y	141_A	0.502	1.00
189_T	194_E	0.502	1.00
52_K	66_T	0.501	1.00
232_V	236_P	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2it1A	1	0.8949	100	0.213	Contact Map
1v43A	2	0.9459	100	0.213	Contact Map
2yyzA	1	0.965	100	0.213	Contact Map
1z47A	2	0.9968	100	0.215	Contact Map
3tuiC	2	0.914	100	0.216	Contact Map
1g291	4	0.9204	100	0.217	Contact Map
1oxxK	1	0.9586	100	0.217	Contact Map
4u00A	1	0.7516	100	0.218	Contact Map
4ry2A	2	0.7389	100	0.218	Contact Map
3rlfA	2	0.9777	100	0.219	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0236 seconds.