Q97VA5 - SULSO - GREMLIN Contacts

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Q97VA5 - Uncharacterized protein

UniProt:	Q97VA5	Sequences: MAKDIKLMFVTDIHGSDIVFRKAINAAHMFKVNYLVFGGDLVGKGVVLLNKKVDEYLTLDNKLITKEEVEEIKRNGYYIYILENRKGMEDFNEVTINRIYVDLVSQQLNSWFKIVRERLEETKVIWNLGNDDPFFVDDIFKNNDIEIKEIIEIDTSSSPLFMLNYAHTNETPYKSYRVAPEYIIYNKGHEMLKKINETKNVIFNFHAPPYNTRLDNAYVNGQWIHVGSRSVRELEEKFQPLLGLHGHIHESSAIDKIGKTLVINPGSMYSEGVLKYAIITISKEVKGISVGYRIKGYVLSQG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
Length:	302 (243)
Sequences:	203 (106)
Seq/√Len:	6.8

SULSO - Q97VA5 Q97WP7 Q97WI0 Q97VA9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
127_N	148_K	4.628	0.98
239_Q	259_K	4.133	0.96
179_A	187_K	3.399	0.90
164_N	204_N	3.248	0.87
239_Q	258_G	3.238	0.87
168_T	178_V	3.018	0.83
175_S	178_V	2.807	0.78
11_T	157_S	2.561	0.71
47_V	179_A	2.511	0.69
188_G	234_L	2.411	0.66
168_T	207_A	2.393	0.65
174_K	178_V	2.385	0.65
234_L	238_F	2.339	0.63
13_I	19_V	2.277	0.61
189_H	237_K	2.261	0.61
157_S	183_I	2.212	0.59
87_G	239_Q	2.083	0.54
232_R	236_E	2.077	0.54
185_Y	234_L	2.076	0.54
80_Y	263_I	2.048	0.53
180_P	183_I	2.010	0.51
181_E	272_G	1.922	0.48
127_N	147_I	1.886	0.47
126_W	141_K	1.862	0.46
36_V	87_G	1.828	0.44
146_E	151_I	1.797	0.43
172_P	177_R	1.775	0.42
98_R	233_E	1.761	0.42
173_Y	177_R	1.760	0.42
171_T	178_V	1.710	0.40
23_A	115_V	1.706	0.40
170_E	178_V	1.704	0.40
145_I	269_Y	1.692	0.39
62_K	106_Q	1.685	0.39
110_S	183_I	1.671	0.39
40_D	129_G	1.624	0.37
13_I	41_L	1.586	0.36
225_H	262_V	1.583	0.36
182_Y	186_N	1.541	0.34
36_V	42_V	1.521	0.33
205_F	231_V	1.515	0.33
56_Y	65_T	1.502	0.33
63_L	207_A	1.494	0.33
169_N	207_A	1.487	0.32
77_Y	102_D	1.483	0.32
174_K	177_R	1.462	0.32
55_E	90_D	1.444	0.31
183_I	186_N	1.443	0.31
123_K	158_S	1.437	0.31
30_F	231_V	1.436	0.31
57_L	179_A	1.426	0.30
94_V	191_M	1.420	0.30
73_K	126_W	1.405	0.30
171_T	175_S	1.405	0.30
228_S	272_G	1.404	0.30
171_T	174_K	1.403	0.30
101_V	135_F	1.395	0.29
13_I	33_N	1.373	0.29
123_K	136_V	1.335	0.28
78_Y	181_E	1.332	0.27
71_E	151_I	1.328	0.27
68_E	87_G	1.311	0.27
21_R	102_D	1.307	0.27
171_T	181_E	1.305	0.27
113_K	230_S	1.304	0.27
146_E	254_I	1.296	0.26
38_G	108_L	1.295	0.26
88_M	270_S	1.283	0.26
190_E	230_S	1.277	0.26
55_E	150_I	1.270	0.26
52_K	125_I	1.262	0.25
148_K	239_Q	1.260	0.25
10_V	32_V	1.256	0.25
66_K	152_E	1.249	0.25
35_L	261_L	1.236	0.25
10_V	23_A	1.235	0.25
98_R	183_I	1.227	0.24
191_M	207_A	1.227	0.24
165_Y	205_F	1.218	0.24
186_N	200_N	1.210	0.24
171_T	226_V	1.209	0.24
21_R	54_D	1.197	0.24
47_V	90_D	1.195	0.23
178_V	181_E	1.186	0.23
165_Y	243_G	1.172	0.23
168_T	253_A	1.166	0.23
24_I	265_P	1.164	0.23
53_V	234_L	1.162	0.23
95_T	256_K	1.160	0.23
47_V	57_L	1.150	0.22
54_D	88_M	1.145	0.22
99_I	181_E	1.140	0.22
217_A	267_S	1.140	0.22
94_V	183_I	1.139	0.22
79_I	181_E	1.139	0.22
32_V	163_L	1.134	0.22
184_I	230_S	1.123	0.22
63_L	101_V	1.112	0.21
200_N	270_S	1.111	0.21
233_E	236_E	1.109	0.21
51_K	123_K	1.107	0.21
115_V	140_F	1.099	0.21
40_D	130_N	1.088	0.21
153_I	238_F	1.084	0.21
47_V	187_K	1.078	0.20
34_Y	136_V	1.053	0.20
131_D	267_S	1.050	0.20
209_P	266_G	1.050	0.20
183_I	187_K	1.050	0.20
165_Y	188_G	1.049	0.20
63_L	99_I	1.048	0.20
172_P	175_S	1.047	0.20
228_S	247_H	1.037	0.19
99_I	229_R	1.036	0.19
231_V	271_E	1.029	0.19
91_F	96_I	1.027	0.19
36_V	92_N	1.022	0.19
103_L	123_K	1.018	0.19
11_T	188_G	1.018	0.19
6_K	153_I	1.017	0.19
67_E	169_N	1.016	0.19
37_F	128_L	1.009	0.19
36_V	261_L	1.004	0.19
131_D	248_I	0.999	0.19
254_I	263_I	0.996	0.19
211_N	234_L	0.994	0.18
71_E	230_S	0.990	0.18
94_V	104_V	0.988	0.18
156_S	159_P	0.987	0.18
63_L	239_Q	0.987	0.18
208_P	215_D	0.985	0.18
206_H	246_G	0.985	0.18
215_D	246_G	0.985	0.18
208_P	264_N	0.985	0.18
206_H	264_N	0.985	0.18
246_G	264_N	0.985	0.18
208_P	246_G	0.985	0.18
50_N	69_V	0.985	0.18
12_D	208_P	0.985	0.18
12_D	206_H	0.985	0.18
12_D	246_G	0.985	0.18
12_D	39_G	0.985	0.18
39_G	246_G	0.985	0.18
39_G	206_H	0.985	0.18
12_D	264_N	0.985	0.18
39_G	208_P	0.985	0.18
206_H	215_D	0.985	0.18
39_G	215_D	0.985	0.18
39_G	264_N	0.985	0.18
215_D	264_N	0.985	0.18
12_D	215_D	0.985	0.18
7_L	32_V	0.980	0.18
171_T	177_R	0.978	0.18
53_V	145_I	0.969	0.18
52_K	227_G	0.969	0.18
100_Y	115_V	0.960	0.18
146_E	184_I	0.957	0.18
6_K	11_T	0.956	0.18
66_K	210_Y	0.946	0.17
256_K	261_L	0.945	0.17
110_S	273_V	0.945	0.17
74_R	78_Y	0.944	0.17
148_K	152_E	0.940	0.17
50_N	269_Y	0.939	0.17
46_V	50_N	0.937	0.17
230_S	271_E	0.926	0.17
131_D	266_G	0.926	0.17
106_Q	238_F	0.913	0.17
168_T	179_A	0.907	0.17
74_R	175_S	0.898	0.16
146_E	150_I	0.895	0.16
172_P	178_V	0.892	0.16
124_V	144_D	0.889	0.16
6_K	32_V	0.884	0.16
87_G	171_T	0.876	0.16
177_R	187_K	0.875	0.16
188_G	225_H	0.874	0.16
106_Q	136_V	0.873	0.16
191_M	231_V	0.866	0.16
9_F	35_L	0.854	0.15
54_D	182_Y	0.854	0.15
116_R	143_N	0.852	0.15
21_R	107_Q	0.851	0.15
67_E	235_E	0.839	0.15
243_G	262_V	0.838	0.15
86_K	173_Y	0.836	0.15
175_S	272_G	0.830	0.15
239_Q	260_T	0.827	0.15
177_R	184_I	0.827	0.15
32_V	114_I	0.826	0.15
36_V	95_T	0.825	0.15
131_D	217_A	0.824	0.15
235_E	257_I	0.814	0.15
65_T	158_S	0.814	0.15
163_L	245_H	0.808	0.15
53_V	70_E	0.808	0.15
152_E	180_P	0.803	0.15
106_Q	150_I	0.796	0.14
172_P	236_E	0.794	0.14
199_K	233_E	0.789	0.14
159_P	183_I	0.789	0.14
13_I	158_S	0.787	0.14
63_L	153_I	0.784	0.14
178_V	242_L	0.784	0.14
99_I	126_W	0.781	0.14
33_N	211_N	0.780	0.14
160_L	263_I	0.778	0.14
86_K	151_I	0.768	0.14
96_I	109_N	0.766	0.14
45_G	77_Y	0.765	0.14
15_G	266_G	0.762	0.14
134_F	202_I	0.758	0.14
233_E	255_D	0.756	0.14
8_M	42_V	0.756	0.14
21_R	198_T	0.753	0.14
47_V	99_I	0.752	0.14
74_R	159_P	0.751	0.14
53_V	230_S	0.750	0.14
22_K	171_T	0.749	0.14
204_N	251_S	0.747	0.13
35_L	209_P	0.744	0.13
87_G	164_N	0.741	0.13
11_T	149_E	0.738	0.13
55_E	65_T	0.733	0.13
72_I	96_I	0.731	0.13
165_Y	214_L	0.730	0.13
38_G	41_L	0.722	0.13
81_I	254_I	0.720	0.13
258_G	261_L	0.719	0.13
36_V	146_E	0.719	0.13
62_K	237_K	0.718	0.13
71_E	74_R	0.716	0.13
68_E	81_I	0.714	0.13
109_N	259_K	0.706	0.13
153_I	186_N	0.705	0.13
66_K	180_P	0.704	0.13
87_G	141_K	0.703	0.13
55_E	123_K	0.702	0.13
18_I	102_D	0.700	0.13
157_S	162_M	0.700	0.13
108_L	126_W	0.700	0.13
172_P	272_G	0.699	0.13
31_K	134_F	0.699	0.13
168_T	226_V	0.689	0.12
17_D	142_N	0.688	0.12
215_D	249_H	0.688	0.12
46_V	103_L	0.688	0.12
249_H	264_N	0.688	0.12
39_G	249_H	0.688	0.12
208_P	249_H	0.688	0.12
206_H	249_H	0.688	0.12
246_G	249_H	0.688	0.12
12_D	249_H	0.688	0.12
185_Y	263_I	0.686	0.12
54_D	72_I	0.683	0.12
85_R	233_E	0.681	0.12
62_K	81_I	0.676	0.12
198_T	232_R	0.674	0.12
235_E	238_F	0.672	0.12
167_H	268_M	0.672	0.12
15_G	247_H	0.671	0.12
53_V	67_E	0.659	0.12
12_D	40_D	0.652	0.12
40_D	208_P	0.652	0.12
40_D	206_H	0.652	0.12
40_D	215_D	0.652	0.12
40_D	246_G	0.652	0.12
40_D	264_N	0.652	0.12
54_D	162_M	0.647	0.12
128_L	145_I	0.646	0.12
153_I	239_Q	0.645	0.12
54_D	63_L	0.645	0.12
179_A	183_I	0.644	0.12
104_V	116_R	0.641	0.12
70_E	255_D	0.637	0.12
84_N	181_E	0.633	0.12
10_V	20_F	0.625	0.11
173_Y	178_V	0.624	0.11
13_I	103_L	0.624	0.11
181_E	263_I	0.620	0.11
42_V	137_D	0.618	0.11
174_K	231_V	0.618	0.11
20_F	162_M	0.617	0.11
231_V	257_I	0.616	0.11
63_L	81_I	0.615	0.11
51_K	186_N	0.615	0.11
69_V	179_A	0.614	0.11
133_P	169_N	0.613	0.11
83_E	86_K	0.613	0.11
169_N	226_V	0.609	0.11
23_A	107_Q	0.608	0.11
18_I	242_L	0.601	0.11
70_E	141_K	0.599	0.11
125_I	162_M	0.592	0.11
111_W	204_N	0.592	0.11
33_N	103_L	0.591	0.11
64_I	108_L	0.590	0.11
67_E	253_A	0.590	0.11
105_S	115_V	0.590	0.11
184_I	248_I	0.584	0.11
148_K	263_I	0.584	0.11
88_M	255_D	0.579	0.11
153_I	157_S	0.578	0.11
169_N	245_H	0.577	0.11
14_H	264_N	0.575	0.11
14_H	246_G	0.575	0.11
14_H	39_G	0.575	0.11
14_H	206_H	0.575	0.11
14_H	208_P	0.575	0.11
14_H	215_D	0.575	0.11
87_G	258_G	0.575	0.11
36_V	80_Y	0.575	0.11
229_R	257_I	0.573	0.11
171_T	236_E	0.571	0.11
14_H	132_D	0.570	0.11
42_V	128_L	0.568	0.11
189_H	253_A	0.567	0.11
129_G	206_H	0.563	0.11
129_G	246_G	0.563	0.11
129_G	264_N	0.563	0.11
129_G	215_D	0.563	0.11
129_G	208_P	0.563	0.11
12_D	129_G	0.563	0.11
39_G	129_G	0.563	0.11
36_V	239_Q	0.562	0.11
88_M	243_G	0.561	0.11
141_K	191_M	0.560	0.11
256_K	265_P	0.560	0.11
69_V	243_G	0.558	0.10
142_N	147_I	0.558	0.10
30_F	244_L	0.557	0.10
168_T	242_L	0.557	0.10
79_I	188_G	0.556	0.10
78_Y	81_I	0.550	0.10
41_L	54_D	0.549	0.10
16_S	267_S	0.549	0.10
8_M	238_F	0.544	0.10
20_F	251_S	0.544	0.10
151_I	186_N	0.543	0.10
31_K	167_H	0.542	0.10
30_F	68_E	0.542	0.10
169_N	243_G	0.541	0.10
177_R	272_G	0.540	0.10
105_S	109_N	0.538	0.10
36_V	172_P	0.537	0.10
123_K	134_F	0.536	0.10
161_F	170_E	0.535	0.10
57_L	104_V	0.535	0.10
9_F	265_P	0.535	0.10
216_N	225_H	0.526	0.10
169_N	175_S	0.524	0.10
114_I	148_K	0.523	0.10
180_P	187_K	0.517	0.10
136_V	146_E	0.517	0.10
10_V	107_Q	0.515	0.10
105_S	159_P	0.513	0.10
76_G	251_S	0.513	0.10
186_N	190_E	0.509	0.10
103_L	125_I	0.504	0.10
176_Y	239_Q	0.503	0.10
82_L	239_Q	0.502	0.10
188_G	205_F	0.502	0.10
81_I	141_K	0.502	0.10
108_L	158_S	0.500	0.10

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1uf3A	6	0.6954	100	0.74	Contact Map
2yvtA	1	0.8046	100	0.742	Contact Map
4peiA	2	0.8179	100	0.752	Contact Map
3rl5A	1	0.6755	99.9	0.781	Contact Map
3qfmA	2	0.7086	99.9	0.806	Contact Map
3d03A	5	0.7417	99.9	0.808	Contact Map
3ib7A	2	0.7781	99.8	0.813	Contact Map
1nnwA	2	0.7285	99.8	0.816	Contact Map
4ykeA	2	0.8642	99.8	0.817	Contact Map
1s3lA	1	0.5364	99.8	0.817	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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